Wall clock time and date at job start Sat Apr 11 2020 05:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35730 * 117.00265 * 2 1 4 4 C 1.39286 * 120.84919 * 0.24220 * 3 2 1 5 5 C 1.37952 * 119.09452 * 180.29913 * 4 3 2 6 6 N 1.31977 * 120.82361 * 359.69756 * 5 4 3 7 7 C 1.31945 * 121.86161 * 0.03333 * 6 5 4 8 8 C 1.50701 * 119.58896 * 180.02562 * 7 6 5 9 9 N 1.46909 * 109.46803 * 274.97508 * 8 7 6 10 10 C 1.46897 * 110.99862 * 180.02562 * 9 8 7 11 11 H 1.08999 * 109.46951 * 324.99098 * 10 9 8 12 12 C 1.52996 * 109.47764 * 84.99415 * 10 9 8 13 13 C 1.53002 * 109.46666 * 204.99957 * 10 9 8 14 14 N 1.46500 * 109.47346 * 54.99893 * 13 10 9 15 15 C 1.34780 * 119.99695 * 180.02562 * 14 13 10 16 16 O 1.21277 * 119.99939 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99648 * 179.97438 * 15 14 13 18 18 S 1.80996 * 109.47175 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00133 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99710 * 0.02562 * 19 18 17 21 21 C 1.38801 * 120.00154 * 179.97438 * 19 18 17 22 22 N 1.31636 * 120.00021 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00336 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46960 * 90.00065 * 23 21 19 25 25 H 1.48498 * 109.47307 * 210.00160 * 23 21 19 26 26 H 1.48502 * 109.46699 * 330.00620 * 23 21 19 27 27 C 1.37997 * 120.82546 * 359.97438 * 7 6 5 28 28 H 1.09001 * 109.46778 * 60.00402 * 1 2 3 29 29 H 1.09000 * 109.47851 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47230 * 300.01006 * 1 2 3 31 31 H 1.08003 * 120.45446 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.59086 * 179.72680 * 5 4 3 33 33 H 1.08996 * 109.47260 * 34.96776 * 8 7 6 34 34 H 1.09000 * 109.47401 * 154.97854 * 8 7 6 35 35 H 1.00893 * 111.00151 * 56.04391 * 9 8 7 36 36 H 1.09005 * 109.46496 * 60.00022 * 12 10 9 37 37 H 1.08992 * 109.47338 * 179.97438 * 12 10 9 38 38 H 1.08999 * 109.47142 * 300.00210 * 12 10 9 39 39 H 1.09008 * 109.46796 * 174.99746 * 13 10 9 40 40 H 1.08996 * 109.47069 * 294.99317 * 13 10 9 41 41 H 0.96995 * 120.00016 * 359.97438 * 14 13 10 42 42 H 1.08995 * 109.47154 * 299.99891 * 17 15 14 43 43 H 1.08996 * 109.47199 * 59.99927 * 17 15 14 44 44 H 0.96994 * 120.00316 * 179.97438 * 22 21 19 45 45 H 1.08002 * 120.45357 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.3041 2.3886 0.0051 5 6 1.9677 3.5980 -0.0014 6 7 3.2866 3.6456 -0.0063 7 6 4.0231 2.5508 -0.0058 8 6 5.5258 2.6649 -0.0109 9 7 6.0005 2.8182 -1.3928 10 6 7.4644 2.9320 -1.4369 11 1 7.8130 3.4769 -0.5596 12 6 8.0847 1.5334 -1.4484 13 6 7.8794 3.6844 -2.7028 14 7 7.1912 4.9769 -2.7504 15 6 7.4040 5.8159 -3.7835 16 8 8.1655 5.5012 -4.6734 17 6 6.6957 7.1452 -3.8327 18 16 7.1856 8.0347 -5.3310 19 6 6.2379 9.5073 -5.1362 20 1 5.6020 9.6298 -4.2719 21 6 6.3094 10.5103 -6.0930 22 7 7.0849 10.3612 -7.1462 23 14 5.3042 12.0712 -5.8869 24 1 6.0980 13.0754 -5.1340 25 1 4.9566 12.6163 -7.2238 26 1 4.0589 11.7628 -5.1389 27 6 3.4346 1.3027 0.0003 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 0.2245 2.3567 0.0095 32 1 1.4010 4.5173 -0.0020 33 1 5.8263 3.5336 0.5748 34 1 5.9600 1.7650 0.4246 35 1 5.5623 3.6093 -1.8399 36 1 7.7360 0.9886 -2.3257 37 1 9.1708 1.6179 -1.4816 38 1 7.7890 0.9974 -0.5465 39 1 8.9572 3.8469 -2.6920 40 1 7.6094 3.0965 -3.5799 41 1 6.5820 5.2284 -2.0388 42 1 5.6180 6.9824 -3.8433 43 1 6.9657 7.7335 -2.9558 44 1 7.1346 11.0619 -7.8150 45 1 4.0432 0.4105 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752862077.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:40 Heat of formation + Delta-G solvation = -38.205220 kcal Electronic energy + Delta-G solvation = -25775.092362 eV Core-core repulsion = 21919.278744 eV Total energy + Delta-G solvation = -3855.813617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.03268 -39.42690 -38.79549 -37.39428 -34.17255 -32.55689 -32.39991 -31.90806 -30.39890 -29.29459 -28.11810 -26.26796 -25.52253 -25.07650 -23.85569 -21.87658 -20.86702 -20.36807 -18.51893 -17.85468 -17.43750 -16.65165 -16.38323 -16.17114 -16.11535 -16.02939 -15.48877 -14.90498 -14.84651 -14.78137 -14.58343 -14.08484 -13.89469 -13.71512 -13.27211 -12.98540 -12.87445 -12.86477 -12.59785 -12.54728 -12.11546 -12.06891 -11.93660 -11.68449 -11.52875 -11.12630 -11.04262 -10.99763 -10.73528 -9.88212 -9.79201 -9.50085 -9.38973 -9.26350 -9.04715 -8.88848 -8.77617 -8.20727 -6.47054 -6.19165 -3.89390 0.69091 0.98671 2.63042 3.04362 3.12129 3.24149 3.28939 3.31538 3.35018 3.72157 3.83906 4.10122 4.22804 4.23083 4.44347 4.52214 4.58502 4.61740 4.73319 4.80824 4.91075 4.95499 5.06186 5.11583 5.15857 5.17824 5.24383 5.40667 5.50539 5.53392 5.57579 5.62443 5.68204 5.69922 5.88158 5.93097 6.03855 6.13368 6.17868 6.58194 6.64658 6.74110 7.02203 7.62131 7.67256 7.68718 8.37940 8.62507 9.26111 10.88265 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010838 B = 0.002244 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.819466 B =12473.971433 C =14513.807138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.311 6.311 3 C 0.166 3.834 4 C -0.263 4.263 5 C 0.141 3.859 6 N -0.502 5.502 7 C 0.164 3.836 8 C 0.109 3.891 9 N -0.680 5.680 10 C 0.074 3.926 11 H 0.054 0.946 12 C -0.138 4.138 13 C 0.118 3.882 14 N -0.742 5.742 15 C 0.534 3.466 16 O -0.516 6.516 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C -0.184 4.184 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.139 0.861 32 H 0.160 0.840 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.350 0.650 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.394 0.606 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.592 -21.776 19.948 31.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.222 6.222 3 C 0.112 3.888 4 C -0.284 4.284 5 C -0.016 4.016 6 N -0.215 5.215 7 C 0.027 3.973 8 C -0.020 4.020 9 N -0.315 5.315 10 C -0.035 4.035 11 H 0.072 0.928 12 C -0.196 4.196 13 C -0.006 4.006 14 N -0.398 5.398 15 C 0.320 3.680 16 O -0.389 6.389 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.205 4.205 28 H 0.078 0.922 29 H 0.122 0.878 30 H 0.077 0.923 31 H 0.156 0.844 32 H 0.177 0.823 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.171 0.829 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.229 0.771 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.751 -22.330 18.142 30.072 hybrid contribution -2.609 1.665 1.844 3.603 sum -11.359 -20.665 19.986 30.911 Atomic orbital electron populations 1.23151 0.77654 1.04439 1.01747 1.86068 1.21992 1.26365 1.87814 1.19340 0.92463 0.84576 0.92379 1.22238 1.01598 0.93329 1.11259 1.22560 0.89934 0.97125 0.92021 1.67541 1.07147 1.31866 1.14938 1.20906 0.96085 0.87549 0.92712 1.20857 0.88004 1.02407 0.90770 1.60536 1.05782 1.49542 1.15666 1.21806 0.87491 0.97082 0.97160 0.92824 1.21739 0.99935 0.95164 1.02804 1.21510 0.97562 0.83788 0.97747 1.46061 1.48969 1.18801 1.26004 1.20285 0.81582 0.85273 0.80872 1.90703 1.35726 1.75727 1.36789 1.23532 1.03142 0.96193 1.07555 1.85386 1.60245 1.16312 1.21385 1.22870 1.30877 1.03313 1.11206 0.90929 1.24997 0.95649 0.98521 0.94476 1.70020 1.36541 1.33826 1.09929 0.86167 0.79921 0.81732 0.77673 1.20288 1.20770 1.19694 1.21247 0.91795 0.99773 1.07666 0.92191 0.87798 0.92338 0.84371 0.82275 0.92730 0.89096 0.82863 0.91458 0.91998 0.92363 0.90762 0.90604 0.77138 0.89179 0.89254 0.92211 0.83980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.84 101.05 0.99 1.10 16 2 O -0.31 -2.56 10.51 -18.90 -0.20 -2.76 16 3 C 0.17 1.49 6.74 -38.82 -0.26 1.23 16 4 C -0.26 -2.07 9.11 -39.30 -0.36 -2.42 16 5 C 0.14 1.25 11.17 -17.59 -0.20 1.05 16 6 N -0.50 -5.35 10.27 -9.55 -0.10 -5.45 16 7 C 0.16 1.60 6.29 -82.63 -0.52 1.08 16 8 C 0.11 0.90 5.79 -4.97 -0.03 0.87 16 9 N -0.68 -6.38 6.29 -107.99 -0.68 -7.06 16 10 C 0.07 0.65 2.81 -67.72 -0.19 0.46 16 11 H 0.05 0.44 7.80 -51.93 -0.41 0.03 16 12 C -0.14 -1.03 9.42 37.16 0.35 -0.68 16 13 C 0.12 1.40 5.31 -4.04 -0.02 1.38 16 14 N -0.74 -10.18 4.99 -60.29 -0.30 -10.48 16 15 C 0.53 10.18 7.85 -10.98 -0.09 10.10 16 16 O -0.52 -11.93 15.86 5.56 0.09 -11.84 16 17 C -0.15 -3.17 6.16 36.01 0.22 -2.95 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.53 -15.40 9.50 30.94 0.29 -15.11 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.41 13.22 55.49 0.73 -25.68 16 23 Si 0.92 21.62 29.55 -169.99 -5.02 16.59 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 C -0.18 -1.70 9.68 -39.29 -0.38 -2.08 16 28 H 0.06 0.22 7.72 -51.93 -0.40 -0.18 16 29 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.19 7.70 -51.93 -0.40 -0.21 16 31 H 0.14 0.72 6.47 -52.48 -0.34 0.38 16 32 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.05 0.45 8.06 -51.93 -0.42 0.03 16 34 H 0.09 0.60 7.33 -51.93 -0.38 0.22 16 35 H 0.35 3.75 6.70 -39.30 -0.26 3.49 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.38 7.45 -51.93 -0.39 -0.01 16 39 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.39 4.49 7.37 -40.82 -0.30 4.19 16 42 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 43 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 393.57 15.07 5.93 5.93 Total: -1.00 -36.11 393.57 -8.68 -44.79 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.64 Total: 3.78 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -0.28 Total: -3.97 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.34 Total: -48.66 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.11 Total: -14.60 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.11 -8.68 -44.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752862077.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.585 kcal (2) G-P(sol) polarization free energy of solvation -36.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds