Wall clock time and date at job start Sat Apr 11 2020 05:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 C 1.50703 * 109.47064 * 180.02562 * 9 7 6 11 11 C 1.38425 * 122.53543 * 90.00298 * 10 9 7 12 12 C 1.33400 * 114.91706 * 179.97438 * 11 10 9 13 13 S 1.75890 * 109.59328 * 359.97438 * 12 11 10 14 14 C 1.33387 * 122.53710 * 269.70953 * 10 9 7 15 15 N 1.46898 * 109.47061 * 119.99908 * 2 1 3 16 16 C 1.46905 * 110.99865 * 275.00665 * 15 2 1 17 17 C 1.50701 * 109.46951 * 179.97438 * 16 15 2 18 18 O 1.21294 * 120.00148 * 0.02562 * 17 16 15 19 19 N 1.34782 * 120.00062 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99889 * 179.97438 * 19 17 16 21 21 H 1.07994 * 120.00089 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99695 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99866 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00048 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.46882 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46922 * 120.00006 * 24 22 20 27 27 H 1.48498 * 109.47272 * 240.00467 * 24 22 20 28 28 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 29 29 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 31 31 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 32 32 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 33 33 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 35 35 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 36 36 H 1.09001 * 109.47380 * 300.00190 * 9 7 6 37 37 H 1.09002 * 109.47060 * 60.00278 * 9 7 6 38 38 H 1.07989 * 122.54438 * 359.97438 * 11 10 9 39 39 H 1.07998 * 125.19834 * 180.02562 * 12 11 10 40 40 H 1.07993 * 125.20760 * 0.02922 * 14 10 9 41 41 H 1.00893 * 111.00068 * 151.05171 * 15 2 1 42 42 H 1.09003 * 109.46905 * 299.99465 * 16 15 2 43 43 H 1.08999 * 109.47700 * 60.00069 * 16 15 2 44 44 H 0.96999 * 119.99748 * 0.02562 * 19 17 16 45 45 H 0.97003 * 119.99449 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 7 4.0534 -1.3042 -2.5094 7 6 5.3742 -1.3396 -2.7749 8 8 6.1585 -0.7997 -2.0237 9 6 5.8767 -2.0510 -4.0048 10 6 7.3786 -1.9444 -4.0682 11 6 8.2166 -2.8812 -3.4881 12 6 9.5198 -2.6381 -3.6370 13 16 9.7419 -1.1542 -4.5549 14 6 8.0011 -0.9434 -4.6925 15 7 2.0196 -0.6925 1.1994 16 6 2.0823 0.2227 2.3469 17 6 2.5871 -0.5218 3.5561 18 8 2.8676 -1.6987 3.4703 19 7 2.7279 0.1205 4.7326 20 6 3.1867 -0.5568 5.8327 21 1 3.4357 -1.6049 5.7565 22 6 3.3313 0.1052 7.0458 23 7 3.0279 1.3804 7.1386 24 14 3.9571 -0.8175 8.5447 25 1 4.2260 -2.2314 8.1788 26 1 5.2106 -0.1846 9.0277 27 1 2.9327 -0.7698 9.6187 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3635 0.5137 0.8900 31 1 1.6055 -0.2617 -2.1369 32 1 1.7517 -1.7714 -1.2056 33 1 3.9995 -1.0726 -0.4258 34 1 3.8532 0.4372 -1.3572 35 1 3.4261 -1.7357 -3.1104 36 1 5.5889 -3.1013 -3.9601 37 1 5.4417 -1.5925 -4.8929 38 1 7.8437 -3.7434 -2.9555 39 1 10.3165 -3.2580 -3.2532 40 1 7.5113 -0.1275 -5.2030 41 1 2.9172 -1.1204 1.0288 42 1 2.7587 1.0463 2.1183 43 1 1.0869 0.6163 2.5526 44 1 2.5039 1.0618 4.8011 45 1 3.1292 1.8427 7.9854 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753001913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:43 Heat of formation + Delta-G solvation = -46.540400 kcal Electronic energy + Delta-G solvation = -25768.832249 eV Core-core repulsion = 21912.657191 eV Total energy + Delta-G solvation = -3856.175058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.14250 -38.54989 -38.02187 -37.07142 -34.78534 -33.86376 -31.95116 -31.32947 -30.98948 -29.27556 -27.94602 -26.37090 -24.26658 -23.70236 -22.84361 -21.01561 -20.23669 -19.23209 -18.98151 -17.92472 -17.86488 -17.24243 -16.52017 -16.03614 -16.00243 -15.44778 -15.07073 -15.01161 -14.47942 -14.09526 -13.98186 -13.72527 -13.61070 -13.30378 -13.16217 -13.01191 -12.80892 -12.50703 -12.45044 -12.15772 -12.02049 -11.85415 -11.67731 -11.53924 -11.28657 -11.23827 -11.06253 -11.02023 -10.76771 -10.31593 -10.19203 -10.04468 -9.48718 -9.25952 -9.02203 -8.61564 -8.41322 -8.04887 -7.92452 -6.38539 -3.79038 0.78229 1.43796 1.74755 2.36316 2.48157 3.09971 3.19009 3.29222 3.36823 3.94553 4.11554 4.34395 4.44344 4.57734 4.61571 4.73565 4.87082 4.93407 4.95695 5.07581 5.14478 5.18299 5.28360 5.37015 5.39117 5.42109 5.56147 5.71013 5.78190 5.82072 5.85023 5.91002 6.02037 6.06856 6.11686 6.19269 6.22335 6.27245 6.36995 7.25304 7.28420 7.58722 7.68569 8.05971 8.10099 8.64863 9.21420 9.58001 10.09521 10.79381 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010330 B = 0.002037 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.917838 B =13741.341585 C =15854.187683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.086 3.914 3 H 0.044 0.956 4 C -0.132 4.132 5 C 0.113 3.887 6 N -0.731 5.731 7 C 0.510 3.490 8 O -0.525 6.525 9 C -0.081 4.081 10 C -0.084 4.084 11 C -0.121 4.121 12 C -0.211 4.211 13 S 0.094 5.906 14 C -0.201 4.201 15 N -0.666 5.666 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.583 6.583 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.400 0.600 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.140 0.860 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.349 0.651 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.420 -2.903 -28.131 28.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 H 0.062 0.938 4 C -0.170 4.170 5 C -0.011 4.011 6 N -0.383 5.383 7 C 0.295 3.705 8 O -0.400 6.400 9 C -0.124 4.124 10 C -0.097 4.097 11 C -0.152 4.152 12 C -0.346 4.346 13 S 0.357 5.643 14 C -0.336 4.336 15 N -0.301 5.301 16 C -0.083 4.083 17 C 0.227 3.773 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.234 0.766 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.158 0.842 39 H 0.182 0.818 40 H 0.179 0.821 41 H 0.171 0.829 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.893 -2.606 -27.789 28.337 hybrid contribution -0.638 -0.135 0.981 1.178 sum 4.256 -2.741 -26.808 27.282 Atomic orbital electron populations 1.21784 0.94271 1.02499 1.01135 1.21456 0.96245 0.95810 0.88992 0.93772 1.21973 0.93689 1.02812 0.98500 1.21470 0.94235 0.97476 0.87924 1.45969 1.07457 1.57633 1.27271 1.20570 0.82129 0.80610 0.87197 1.90772 1.55154 1.44829 1.49264 1.20364 0.92097 1.02672 0.97228 1.18311 0.95064 0.95883 1.00470 1.20038 0.92354 1.01047 1.01729 1.25551 1.00357 1.01404 1.07319 1.84225 1.05016 1.21937 1.53092 1.25391 0.96532 1.03497 1.08200 1.60208 1.34941 1.32148 1.02798 1.21726 1.01264 0.93953 0.91350 1.19824 0.84859 0.88200 0.84450 1.90521 1.55262 1.16171 1.84764 1.41871 1.57838 1.12417 1.08000 1.19752 1.39764 0.96434 0.86755 0.87887 1.25266 0.97730 0.95795 0.99252 1.69624 1.48835 1.08858 1.27055 0.85801 0.78215 0.79640 0.80698 1.19221 1.20775 1.20758 0.92905 0.91851 0.92397 0.90673 0.90040 0.90954 0.91556 0.76616 0.87726 0.87982 0.84250 0.81814 0.82076 0.82944 0.93849 0.89580 0.77473 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.41 37.16 0.35 -1.14 16 2 C 0.09 1.00 2.65 -67.72 -0.18 0.82 16 3 H 0.04 0.51 7.80 -51.93 -0.40 0.11 16 4 C -0.13 -1.19 4.92 -26.74 -0.13 -1.32 16 5 C 0.11 1.21 5.50 -4.04 -0.02 1.19 16 6 N -0.73 -6.32 5.56 -60.29 -0.33 -6.66 16 7 C 0.51 5.53 7.82 -10.99 -0.09 5.45 16 8 O -0.53 -8.46 16.03 5.56 0.09 -8.37 16 9 C -0.08 -0.58 5.96 -29.03 -0.17 -0.75 16 10 C -0.08 -0.80 4.29 -106.25 -0.46 -1.26 16 11 C -0.12 -1.18 9.98 -41.20 -0.41 -1.59 16 12 C -0.21 -1.92 11.23 29.04 0.33 -1.59 16 13 S 0.09 0.83 23.34 -107.50 -2.51 -1.68 16 14 C -0.20 -1.84 10.98 29.04 0.32 -1.52 16 15 N -0.67 -10.75 5.93 -107.99 -0.64 -11.40 16 16 C 0.05 0.90 5.97 -4.97 -0.03 0.87 16 17 C 0.44 10.72 7.82 -10.98 -0.09 10.64 16 18 O -0.58 -16.25 15.78 5.55 0.09 -16.17 16 19 N -0.56 -14.70 5.29 -10.96 -0.06 -14.75 16 20 C -0.30 -8.50 9.68 -14.93 -0.14 -8.64 16 21 H 0.10 3.09 7.16 -52.49 -0.38 2.72 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -25.02 13.05 55.50 0.72 -24.30 16 24 Si 0.93 21.50 29.55 -169.99 -5.02 16.48 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.98 6.43 -51.93 -0.33 0.65 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.40 2.06 8.47 -40.82 -0.35 1.71 16 36 H 0.10 0.52 8.13 -51.93 -0.42 0.10 16 37 H 0.10 0.46 8.12 -51.93 -0.42 0.03 16 38 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.16 1.18 8.06 -52.49 -0.42 0.75 16 41 H 0.35 5.98 6.17 -39.30 -0.24 5.73 16 42 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 43 H 0.09 1.44 7.44 -51.93 -0.39 1.05 16 44 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 45 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 393.87 15.07 5.94 5.94 Total: -1.00 -35.80 393.87 -9.13 -44.93 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -6.58 Total: 14.34 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -0.82 Total: 1.63 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: -0.31 Total: -57.10 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: 0.18 Total: -24.54 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.51 Total: -1.68 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.80 -9.13 -44.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753001913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.610 kcal (2) G-P(sol) polarization free energy of solvation -35.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds