Wall clock time and date at job start Sat Apr 11 2020 05:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 C 1.50703 * 109.47064 * 180.02562 * 9 7 6 11 11 C 1.38425 * 122.53543 * 90.00298 * 10 9 7 12 12 C 1.33400 * 114.91706 * 179.97438 * 11 10 9 13 13 S 1.75890 * 109.59328 * 359.97438 * 12 11 10 14 14 C 1.33387 * 122.53710 * 269.70953 * 10 9 7 15 15 N 1.46898 * 109.47061 * 119.99908 * 2 1 3 16 16 C 1.46905 * 110.99865 * 275.00665 * 15 2 1 17 17 C 1.50701 * 109.46951 * 179.97438 * 16 15 2 18 18 O 1.21294 * 120.00148 * 0.02562 * 17 16 15 19 19 N 1.34782 * 120.00062 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99889 * 179.97438 * 19 17 16 21 21 H 1.07994 * 120.00089 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99695 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99866 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00048 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.46882 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46922 * 120.00006 * 24 22 20 27 27 H 1.48498 * 109.47272 * 240.00467 * 24 22 20 28 28 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 29 29 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 31 31 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 32 32 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 33 33 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 35 35 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 36 36 H 1.09001 * 109.47380 * 300.00190 * 9 7 6 37 37 H 1.09002 * 109.47060 * 60.00278 * 9 7 6 38 38 H 1.07989 * 122.54438 * 359.97438 * 11 10 9 39 39 H 1.07998 * 125.19834 * 180.02562 * 12 11 10 40 40 H 1.07993 * 125.20760 * 0.02922 * 14 10 9 41 41 H 1.00893 * 111.00068 * 151.05171 * 15 2 1 42 42 H 1.09003 * 109.46905 * 299.99465 * 16 15 2 43 43 H 1.08999 * 109.47700 * 60.00069 * 16 15 2 44 44 H 0.96999 * 119.99748 * 0.02562 * 19 17 16 45 45 H 0.97003 * 119.99449 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 7 4.0534 -1.3042 -2.5094 7 6 5.3742 -1.3396 -2.7749 8 8 6.1585 -0.7997 -2.0237 9 6 5.8767 -2.0510 -4.0048 10 6 7.3786 -1.9444 -4.0682 11 6 8.2166 -2.8812 -3.4881 12 6 9.5198 -2.6381 -3.6370 13 16 9.7419 -1.1542 -4.5549 14 6 8.0011 -0.9434 -4.6925 15 7 2.0196 -0.6925 1.1994 16 6 2.0823 0.2227 2.3469 17 6 2.5871 -0.5218 3.5561 18 8 2.8676 -1.6987 3.4703 19 7 2.7279 0.1205 4.7326 20 6 3.1867 -0.5568 5.8327 21 1 3.4357 -1.6049 5.7565 22 6 3.3313 0.1052 7.0458 23 7 3.0279 1.3804 7.1386 24 14 3.9571 -0.8175 8.5447 25 1 4.2260 -2.2314 8.1788 26 1 5.2106 -0.1846 9.0277 27 1 2.9327 -0.7698 9.6187 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3635 0.5137 0.8900 31 1 1.6055 -0.2617 -2.1369 32 1 1.7517 -1.7714 -1.2056 33 1 3.9995 -1.0726 -0.4258 34 1 3.8532 0.4372 -1.3572 35 1 3.4261 -1.7357 -3.1104 36 1 5.5889 -3.1013 -3.9601 37 1 5.4417 -1.5925 -4.8929 38 1 7.8437 -3.7434 -2.9555 39 1 10.3165 -3.2580 -3.2532 40 1 7.5113 -0.1275 -5.2030 41 1 2.9172 -1.1204 1.0288 42 1 2.7587 1.0463 2.1183 43 1 1.0869 0.6163 2.5526 44 1 2.5039 1.0618 4.8011 45 1 3.1292 1.8427 7.9854 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753001913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:42 Heat of formation + Delta-G solvation = -73.832174 kcal Electronic energy + Delta-G solvation = -25770.015709 eV Core-core repulsion = 21912.657191 eV Total energy + Delta-G solvation = -3857.358518 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.97181 -40.24423 -38.88396 -38.21953 -36.06249 -35.64964 -33.35719 -32.82215 -32.05450 -30.08993 -28.63729 -28.05853 -25.88249 -24.64524 -23.64126 -21.86822 -21.23467 -21.04109 -19.94320 -19.66441 -18.60219 -18.11858 -17.75645 -17.25119 -16.97984 -16.70944 -16.48966 -16.14275 -15.89454 -15.59561 -15.27399 -14.97152 -14.67539 -14.33214 -14.07471 -13.93440 -13.77278 -13.55788 -13.52460 -13.36150 -13.15565 -13.09937 -12.88522 -12.62248 -12.56203 -12.43086 -12.22944 -12.16246 -12.11384 -11.75364 -11.69227 -11.53494 -10.95723 -10.36892 -10.11310 -10.03929 -9.70662 -9.33543 -9.30235 -8.48918 -5.97781 0.09833 0.77558 1.07169 1.34876 1.39803 1.54475 1.65590 1.67250 2.02315 2.27567 2.37556 2.92196 3.18040 3.49923 3.79356 3.83436 3.94225 4.01867 4.10657 4.18832 4.28806 4.38110 4.43266 4.48320 4.51528 4.54693 4.60988 4.63225 4.70463 4.76634 4.97073 5.02469 5.06353 5.11170 5.21140 5.38891 5.43073 5.46826 5.48021 5.53256 5.90084 6.12362 6.39937 6.57658 6.59817 7.10223 7.31519 7.53382 8.08786 8.68832 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010330 B = 0.002037 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.917838 B =13741.341585 C =15854.187683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.081 3.919 3 H 0.050 0.950 4 C -0.116 4.116 5 C 0.116 3.884 6 N -0.714 5.714 7 C 0.506 3.494 8 O -0.587 6.587 9 C -0.073 4.073 10 C -0.100 4.100 11 C -0.140 4.140 12 C -0.221 4.221 13 S 0.088 5.912 14 C -0.211 4.211 15 N -0.680 5.680 16 C 0.064 3.936 17 C 0.436 3.564 18 O -0.624 6.624 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.268 1.268 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.037 0.963 34 H 0.055 0.945 35 H 0.421 0.579 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.147 0.853 39 H 0.179 0.821 40 H 0.178 0.822 41 H 0.340 0.660 42 H 0.060 0.940 43 H 0.105 0.895 44 H 0.396 0.604 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.210 -2.686 -29.737 29.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.068 0.932 4 C -0.154 4.154 5 C -0.008 4.008 6 N -0.367 5.367 7 C 0.293 3.707 8 O -0.466 6.466 9 C -0.114 4.114 10 C -0.112 4.112 11 C -0.170 4.170 12 C -0.357 4.357 13 S 0.352 5.648 14 C -0.346 4.346 15 N -0.314 5.314 16 C -0.068 4.068 17 C 0.224 3.776 18 O -0.510 6.510 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.193 1.193 28 H 0.102 0.898 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.129 0.871 32 H 0.102 0.898 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.258 0.742 36 H 0.148 0.852 37 H 0.154 0.846 38 H 0.164 0.836 39 H 0.197 0.803 40 H 0.195 0.805 41 H 0.161 0.839 42 H 0.078 0.922 43 H 0.123 0.877 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.623 -2.376 -29.442 29.759 hybrid contribution -0.273 -0.194 1.438 1.477 sum 3.350 -2.570 -28.003 28.320 Atomic orbital electron populations 1.21776 0.93105 1.02379 1.02085 1.21650 0.97000 0.96046 0.88136 0.93179 1.21879 0.92058 1.02999 0.98470 1.21293 0.95413 0.96643 0.87469 1.45817 1.07409 1.56803 1.26702 1.21273 0.82112 0.79745 0.87570 1.90750 1.56714 1.47627 1.51520 1.20441 0.90624 1.03969 0.96407 1.18629 0.96470 0.95827 1.00320 1.20320 0.92818 1.01710 1.02158 1.25853 1.00870 1.01645 1.07289 1.84183 1.05476 1.22034 1.53116 1.25699 0.96562 1.03951 1.08435 1.60264 1.34532 1.32605 1.04018 1.21580 1.02126 0.93714 0.89382 1.20928 0.83211 0.88017 0.85485 1.90484 1.56659 1.18265 1.85619 1.41948 1.58296 1.12561 1.08274 1.19698 1.42163 0.95910 0.88568 0.90433 1.26071 0.97216 0.96673 1.01428 1.69681 1.48610 1.09684 1.28135 0.84859 0.78213 0.77983 0.77196 1.19857 1.19584 1.19336 0.89815 0.92490 0.93618 0.87125 0.89797 0.94469 0.92616 0.74167 0.85168 0.84589 0.83571 0.80340 0.80506 0.83941 0.92175 0.87686 0.76981 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.41 71.98 0.68 -1.87 16 2 C 0.08 1.74 2.65 44.91 0.12 1.86 16 3 H 0.05 1.04 7.80 -2.39 -0.02 1.03 16 4 C -0.12 -1.80 4.92 30.59 0.15 -1.65 16 5 C 0.12 2.40 5.50 86.38 0.48 2.88 16 6 N -0.71 -11.05 5.56 -463.06 -2.57 -13.62 16 7 C 0.51 10.45 7.82 87.66 0.69 11.14 16 8 O -0.59 -19.28 16.03 -3.03 -0.05 -19.33 16 9 C -0.07 -0.87 5.96 29.10 0.17 -0.70 16 10 C -0.10 -1.79 4.29 -20.92 -0.09 -1.88 16 11 C -0.14 -2.66 9.98 21.22 0.21 -2.45 16 12 C -0.22 -4.01 11.23 66.72 0.75 -3.26 16 13 S 0.09 1.55 23.34 -56.49 -1.32 0.23 16 14 C -0.21 -3.70 10.98 66.72 0.73 -2.97 16 15 N -0.68 -21.70 5.93 -495.58 -2.94 -24.64 16 16 C 0.06 2.32 5.97 85.56 0.51 2.83 16 17 C 0.44 21.72 7.82 87.66 0.69 22.40 16 18 O -0.62 -36.04 15.78 -3.07 -0.05 -36.09 16 19 N -0.57 -30.62 5.29 -306.98 -1.62 -32.25 16 20 C -0.33 -19.61 9.68 84.04 0.81 -18.80 16 21 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 22 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 23 N -0.92 -50.85 13.05 21.66 0.28 -50.56 16 24 Si 0.99 44.13 29.55 68.60 2.03 46.16 16 25 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 28 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.04 0.97 7.45 -2.39 -0.02 0.95 16 31 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.04 1.05 6.43 -2.39 -0.02 1.03 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.42 2.95 8.47 -92.71 -0.79 2.17 16 36 H 0.13 0.91 8.13 -2.39 -0.02 0.89 16 37 H 0.14 0.71 8.12 -2.39 -0.02 0.69 16 38 H 0.15 2.43 8.06 -2.92 -0.02 2.40 16 39 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 40 H 0.18 2.35 8.06 -2.91 -0.02 2.32 16 41 H 0.34 11.91 6.17 -89.70 -0.55 11.35 16 42 H 0.06 1.97 8.06 -2.39 -0.02 1.95 16 43 H 0.11 3.39 7.44 -2.39 -0.02 3.37 16 44 H 0.40 20.05 7.90 -92.71 -0.73 19.32 16 45 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -80.98 393.87 -0.92 -81.90 By element: Atomic # 1 Polarization: 42.02 SS G_CDS: -1.04 Total: 40.99 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 6.36 Total: 7.21 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -6.85 Total: -121.07 kcal Atomic # 8 Polarization: -55.32 SS G_CDS: -0.10 Total: -55.42 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -1.32 Total: 0.23 kcal Total: -80.98 -0.92 -81.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753001913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.066 kcal (2) G-P(sol) polarization free energy of solvation -80.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds