Wall clock time and date at job start Sat Apr 11 2020 05:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46824 * 2 1 4 4 C 1.52997 * 109.46968 * 240.00058 * 2 1 3 5 5 N 1.46503 * 109.47144 * 65.00186 * 4 2 1 6 6 C 1.36937 * 120.00099 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00073 * 359.97438 * 6 5 4 8 8 C 1.38812 * 120.00285 * 179.97438 * 6 5 4 9 9 N 1.31616 * 120.00469 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99795 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.46735 * 90.00257 * 10 8 6 12 12 H 1.48494 * 109.47302 * 209.99986 * 10 8 6 13 13 H 1.48500 * 109.47034 * 330.00496 * 10 8 6 14 14 C 1.53001 * 109.47213 * 119.99919 * 2 1 3 15 15 N 1.46495 * 109.47097 * 295.00022 * 14 2 1 16 16 C 1.34775 * 119.99832 * 179.97438 * 15 14 2 17 17 O 1.21279 * 120.00197 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00194 * 180.02562 * 16 15 14 19 19 N 1.46501 * 109.47536 * 180.02562 * 18 16 15 20 20 C 1.46496 * 119.99950 * 89.99808 * 19 18 16 21 21 C 1.34769 * 119.99900 * 269.99968 * 19 18 16 22 22 O 1.21707 * 119.99975 * 6.06047 * 21 19 18 23 23 C 1.46580 * 120.00177 * 186.06108 * 21 19 18 24 24 C 1.36649 * 125.45957 * 186.82362 * 23 21 19 25 25 C 1.37474 * 113.29713 * 179.97438 * 24 23 21 26 26 C 1.33813 * 115.10171 * 359.97438 * 25 24 23 27 27 S 1.70621 * 110.95489 * 359.76823 * 26 25 24 28 28 H 1.08990 * 109.47265 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46647 * 300.00349 * 1 2 3 30 30 H 1.09001 * 109.46850 * 59.99587 * 1 2 3 31 31 H 1.08996 * 109.47297 * 184.99684 * 4 2 1 32 32 H 1.09005 * 109.47209 * 305.00174 * 4 2 1 33 33 H 0.97005 * 120.00037 * 359.97438 * 5 4 2 34 34 H 0.96994 * 120.00509 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.46672 * 174.99704 * 14 2 1 36 36 H 1.09000 * 109.46698 * 55.00195 * 14 2 1 37 37 H 0.97003 * 120.00513 * 359.97438 * 15 14 2 38 38 H 1.09008 * 109.47167 * 300.00397 * 18 16 15 39 39 H 1.09000 * 109.47568 * 59.99859 * 18 16 15 40 40 H 1.08993 * 109.47641 * 95.96339 * 20 19 18 41 41 H 1.09007 * 109.46737 * 215.96188 * 20 19 18 42 42 H 1.09005 * 109.47345 * 335.95871 * 20 19 18 43 43 H 1.08001 * 123.35339 * 359.95008 * 24 23 21 44 44 H 1.08002 * 122.45178 * 180.02562 * 25 24 23 45 45 H 1.08004 * 124.52241 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6524 0.0354 -2.4424 6 6 2.0010 -0.4207 -3.6856 7 1 2.5620 -1.3380 -3.7865 8 6 1.6334 0.2959 -4.8162 9 7 1.9680 -0.1427 -6.0111 10 14 0.6624 1.8822 -4.6416 11 1 1.6013 3.0269 -4.5253 12 1 -0.1998 2.0688 -5.8361 13 1 -0.1858 1.8121 -3.4248 14 6 2.0401 -0.7212 1.2493 15 7 1.6525 0.0354 2.4423 16 6 1.9957 -0.4136 3.6659 17 8 2.6257 -1.4437 3.7792 18 6 1.5965 0.3643 4.8933 19 7 2.0850 -0.3262 6.0895 20 6 3.4130 -0.0150 6.6239 21 6 1.3126 -1.2477 6.6982 22 8 0.2579 -1.5865 6.1942 23 6 1.7427 -1.8418 7.9673 24 6 1.1191 -2.8731 8.6115 25 6 1.7366 -3.2334 9.7857 26 6 2.8283 -2.5237 10.0940 27 16 3.1484 -1.3471 8.9005 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.1263 -0.7994 -1.2057 32 1 1.6053 -1.7198 -1.2952 33 1 1.1483 0.8592 -2.3518 34 1 1.7108 0.3578 -6.8011 35 1 3.1264 -0.7994 1.2055 36 1 1.6054 -1.7198 1.2951 37 1 1.1489 0.8595 2.3518 38 1 2.0311 1.3630 4.8478 39 1 0.5102 0.4426 4.9367 40 1 3.3201 0.7210 7.4225 41 1 3.8679 -0.9237 7.0184 42 1 4.0393 0.3890 5.8285 43 1 0.2295 -3.3566 8.2357 44 1 1.3681 -4.0315 10.4130 45 1 3.4287 -2.6774 10.9785 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753617660.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:41 Heat of formation + Delta-G solvation = -14.834003 kcal Electronic energy + Delta-G solvation = -26168.250105 eV Core-core repulsion = 22313.449940 eV Total energy + Delta-G solvation = -3854.800165 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.65985 -39.38211 -37.88714 -36.98093 -35.81049 -34.48926 -32.58651 -31.07890 -30.46673 -28.93859 -27.27304 -26.54274 -25.55429 -24.58373 -22.23961 -21.51151 -20.64047 -19.99699 -19.50329 -18.49593 -17.85735 -17.22105 -16.92672 -16.28772 -16.08518 -15.64965 -15.52024 -15.13588 -14.53875 -14.45803 -13.96011 -13.91740 -13.67336 -13.52998 -13.52038 -13.21376 -13.12271 -12.99403 -12.87769 -12.50970 -12.45550 -12.24554 -12.08744 -11.44871 -11.08691 -11.04774 -10.76497 -10.62702 -10.61824 -10.44202 -10.28221 -10.10888 -9.58923 -9.37227 -9.12567 -9.11164 -8.90713 -8.86630 -7.23768 -5.76992 -3.12696 0.10830 1.06124 1.50180 1.98760 2.30093 2.49642 2.83721 3.19551 3.35263 3.37395 3.43863 4.07292 4.47499 4.56280 4.57978 4.58143 4.68736 4.83016 4.88408 4.89573 5.00343 5.08426 5.09446 5.14963 5.23851 5.53181 5.53666 5.66502 5.71862 5.74190 5.82290 5.88288 5.90106 5.92065 6.09501 6.24087 6.38251 6.46594 6.64999 6.75061 6.79045 7.36229 7.69395 7.99407 8.09896 8.41835 9.20770 9.92798 10.12581 11.41461 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035209 B = 0.001727 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.055323 B =16206.946232 C =16217.552254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 H 0.076 0.924 4 C 0.164 3.836 5 N -0.754 5.754 6 C -0.244 4.244 7 H 0.090 0.910 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.128 3.872 15 N -0.724 5.724 16 C 0.494 3.506 17 O -0.530 6.530 18 C 0.099 3.901 19 N -0.597 5.597 20 C 0.065 3.935 21 C 0.596 3.404 22 O -0.522 6.522 23 C -0.268 4.268 24 C -0.052 4.052 25 C -0.151 4.151 26 C -0.254 4.254 27 S 0.223 5.777 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.030 0.970 32 H 0.031 0.969 33 H 0.361 0.639 34 H 0.259 0.741 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.400 0.600 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.153 0.847 44 H 0.142 0.858 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.733 2.594 37.082 37.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.133 4.133 3 H 0.094 0.906 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.374 4.374 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.582 5.582 10 Si 0.716 3.284 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.004 3.996 15 N -0.377 5.377 16 C 0.278 3.722 17 O -0.406 6.406 18 C -0.027 4.027 19 N -0.329 5.329 20 C -0.079 4.079 21 C 0.385 3.615 22 O -0.399 6.399 23 C -0.388 4.388 24 C -0.085 4.085 25 C -0.181 4.181 26 C -0.391 4.391 27 S 0.491 5.509 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.194 0.806 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.234 0.766 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.171 0.829 44 H 0.160 0.840 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.871 2.589 36.570 36.774 hybrid contribution -1.893 0.303 0.179 1.925 sum 0.979 2.892 36.749 36.876 Atomic orbital electron populations 1.21822 0.94719 1.02354 1.01249 1.21602 0.96672 1.00472 0.94547 0.90584 1.20555 0.97185 0.94272 0.84320 1.42680 1.67667 1.27299 1.02342 1.19072 1.29374 1.07182 0.81771 0.89181 1.24677 1.00779 0.98664 0.95093 1.69698 1.51334 1.40245 0.96921 0.86539 0.80235 0.84809 0.76855 1.21117 1.21720 1.20383 1.21385 1.00170 0.95374 0.82637 1.46020 1.57869 1.27938 1.05886 1.21061 0.79923 0.86335 0.84914 1.90722 1.39498 1.23923 1.86476 1.21360 1.02937 0.95567 0.82865 1.47120 1.17452 1.41050 1.27279 1.22022 0.83739 1.02019 1.00138 1.16953 0.83700 0.78177 0.82689 1.90851 1.23677 1.59982 1.65396 1.24506 1.04479 1.07478 1.02364 1.20815 0.99960 0.94224 0.93547 1.20032 0.96870 1.03012 0.98221 1.25845 1.02920 1.04246 1.06120 1.83474 1.23641 1.33459 1.10295 0.92366 0.93595 0.91784 0.95243 0.95157 0.80640 0.93058 0.91206 0.91209 0.76560 0.86972 0.86610 0.91230 0.90153 0.88926 0.82934 0.84020 0.81733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.94 37.16 0.33 -1.65 16 2 C -0.11 -1.61 2.46 -90.62 -0.22 -1.84 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.16 3.12 5.65 -4.04 -0.02 3.09 16 5 N -0.75 -17.69 5.13 -59.91 -0.31 -18.00 16 6 C -0.24 -6.95 10.47 -15.06 -0.16 -7.10 16 7 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 8 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 9 N -0.93 -29.46 13.97 55.49 0.78 -28.69 16 10 Si 0.89 21.94 27.74 -169.99 -4.71 17.23 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 14 C 0.13 1.67 5.06 -4.04 -0.02 1.65 16 15 N -0.72 -7.68 5.28 -60.30 -0.32 -8.00 16 16 C 0.49 5.88 7.90 -10.99 -0.09 5.79 16 17 O -0.53 -8.67 16.43 5.56 0.09 -8.58 16 18 C 0.10 0.82 5.81 -5.19 -0.03 0.79 16 19 N -0.60 -5.60 2.36 -184.55 -0.44 -6.04 16 20 C 0.07 0.39 8.83 59.84 0.53 0.92 16 21 C 0.60 7.15 7.62 -12.90 -0.10 7.05 16 22 O -0.52 -8.07 16.49 5.18 0.09 -7.99 16 23 C -0.27 -2.61 6.21 -36.79 -0.23 -2.83 16 24 C -0.05 -0.47 10.02 -40.43 -0.41 -0.88 16 25 C -0.15 -1.04 10.15 -41.41 -0.42 -1.46 16 26 C -0.25 -1.49 10.92 29.18 0.32 -1.17 16 27 S 0.22 1.34 17.89 -107.50 -1.92 -0.59 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.50 7.18 -51.93 -0.37 0.12 16 30 H 0.06 1.00 7.18 -51.93 -0.37 0.63 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.36 8.15 4.71 -40.82 -0.19 7.96 16 34 H 0.26 7.77 8.31 -40.82 -0.34 7.44 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.40 3.11 7.66 -40.82 -0.31 2.80 16 38 H 0.11 0.47 8.07 -51.92 -0.42 0.05 16 39 H 0.12 0.93 7.51 -51.93 -0.39 0.54 16 40 H 0.07 0.25 7.50 -51.93 -0.39 -0.14 16 41 H 0.08 0.52 5.11 -27.34 -0.14 0.38 16 42 H 0.09 0.47 8.03 -51.93 -0.42 0.05 16 43 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 45 H 0.17 0.58 8.06 -52.48 -0.42 0.15 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -38.04 383.91 -7.97 -46.02 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.40 Total: 6.46 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -0.61 Total: 2.38 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.29 Total: -60.72 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: 0.18 Total: -16.56 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.23 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -1.92 Total: -0.59 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.04 -7.97 -46.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753617660.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.181 kcal (2) G-P(sol) polarization free energy of solvation -38.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds