Wall clock time and date at job start Sat Apr 11 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47540 * 2 1 4 4 C 1.53000 * 109.47518 * 120.00366 * 2 1 3 5 5 N 1.46504 * 109.46735 * 295.00135 * 4 2 1 6 6 C 1.36936 * 119.99817 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00322 * 359.97438 * 6 5 4 8 8 C 1.38806 * 119.99862 * 179.72490 * 6 5 4 9 9 N 1.31617 * 120.00133 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99878 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46987 * 60.00068 * 10 8 6 12 12 H 1.48505 * 109.47059 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47196 * 299.99488 * 10 8 6 14 14 C 1.53001 * 109.47154 * 240.00388 * 2 1 3 15 15 N 1.46503 * 109.47329 * 64.99950 * 14 2 1 16 16 C 1.34774 * 119.99870 * 179.97438 * 15 14 2 17 17 O 1.21276 * 120.00433 * 0.02562 * 16 15 14 18 18 C 1.50708 * 119.99749 * 180.02562 * 16 15 14 19 19 N 1.46501 * 109.46906 * 180.02562 * 18 16 15 20 20 C 1.46493 * 120.00372 * 89.99851 * 19 18 16 21 21 C 1.34780 * 119.99353 * 269.99544 * 19 18 16 22 22 O 1.21698 * 120.00284 * 6.06604 * 21 19 18 23 23 C 1.46581 * 119.99910 * 186.06930 * 21 19 18 24 24 C 1.36643 * 125.46282 * 186.83146 * 23 21 19 25 25 C 1.37471 * 113.30047 * 179.97438 * 24 23 21 26 26 C 1.33809 * 115.09979 * 359.97438 * 25 24 23 27 27 S 1.70610 * 110.95688 * 359.76720 * 26 25 24 28 28 H 1.09005 * 109.47352 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47551 * 299.99347 * 1 2 3 30 30 H 1.09000 * 109.47415 * 60.00068 * 1 2 3 31 31 H 1.08999 * 109.47501 * 175.00346 * 4 2 1 32 32 H 1.08997 * 109.46740 * 54.99745 * 4 2 1 33 33 H 0.97000 * 120.00027 * 359.97438 * 5 4 2 34 34 H 0.97002 * 120.00420 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.47232 * 185.00266 * 14 2 1 36 36 H 1.09005 * 109.47346 * 304.99609 * 14 2 1 37 37 H 0.96992 * 119.99624 * 0.02562 * 15 14 2 38 38 H 1.09006 * 109.46464 * 299.99695 * 18 16 15 39 39 H 1.08998 * 109.47303 * 59.99939 * 18 16 15 40 40 H 1.08997 * 109.47279 * 95.95947 * 20 19 18 41 41 H 1.09003 * 109.47047 * 215.95645 * 20 19 18 42 42 H 1.08997 * 109.47130 * 335.95385 * 20 19 18 43 43 H 1.08006 * 123.34982 * 359.92961 * 24 23 21 44 44 H 1.08007 * 122.44691 * 180.02562 * 25 24 23 45 45 H 1.08007 * 124.52072 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 0.0353 2.4423 6 6 2.0011 -0.4209 3.6855 7 1 2.5614 -1.3386 3.7865 8 6 1.6388 0.2989 4.8157 9 7 0.9597 1.4196 4.6925 10 14 2.1138 -0.3238 6.5116 11 1 3.5926 -0.4210 6.6070 12 1 1.6117 0.6187 7.5436 13 1 1.5142 -1.6643 6.7327 14 6 2.0399 -0.7212 -1.2493 15 7 1.6524 0.0355 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6264 -1.4430 -3.7793 18 6 1.5982 0.3658 -4.8933 19 7 2.0865 -0.3248 -6.0895 20 6 1.2464 -1.3257 -6.7517 21 6 3.3087 -0.0393 -6.5807 22 8 4.0501 0.7087 -5.9708 23 6 3.7449 -0.6296 -7.8495 24 6 4.9985 -0.5249 -8.3830 25 6 5.1337 -1.1769 -9.5857 26 6 4.0307 -1.7950 -10.0235 27 16 2.7411 -1.5927 -8.9249 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.1263 -0.7995 1.2055 32 1 1.6054 -1.7198 1.2950 33 1 1.1488 0.8593 2.3517 34 1 0.7062 1.9224 5.4823 35 1 3.1263 -0.7994 -1.2056 36 1 1.6054 -1.7198 -1.2953 37 1 1.1489 0.8595 -2.3517 38 1 0.5119 0.4440 -4.9373 39 1 2.0328 1.3643 -4.8469 40 1 0.7076 -0.8595 -7.5765 41 1 1.8739 -2.1299 -7.1361 42 1 0.5328 -1.7326 -6.0352 43 1 5.8029 0.0167 -7.9075 44 1 6.0627 -1.1899 -10.1366 45 1 3.9665 -2.3516 -10.9469 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753617661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:44 Heat of formation + Delta-G solvation = -19.056409 kcal Electronic energy + Delta-G solvation = -26082.939257 eV Core-core repulsion = 22227.955994 eV Total energy + Delta-G solvation = -3854.983262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.61005 -39.32073 -37.85184 -36.83223 -35.75858 -34.34809 -32.55104 -30.98734 -30.05277 -28.85699 -27.22745 -26.36651 -25.35504 -24.53761 -22.54870 -21.54135 -20.55450 -19.80275 -19.47317 -18.44700 -17.63337 -16.94949 -16.82466 -16.26426 -16.06408 -15.51786 -15.35533 -15.23447 -14.50415 -14.36237 -13.90041 -13.77576 -13.61445 -13.50774 -13.45768 -13.15375 -13.05121 -12.95558 -12.80410 -12.49649 -12.36549 -12.10866 -11.98011 -11.06498 -11.05543 -10.89386 -10.69810 -10.57290 -10.44224 -10.39771 -10.24538 -10.02587 -9.67746 -9.33710 -9.08362 -9.03567 -8.86313 -8.83427 -6.91390 -5.76022 -3.04385 0.13742 1.08837 1.52832 2.01850 2.34587 2.55884 2.87673 3.26703 3.45517 3.49645 3.50839 4.11066 4.51158 4.59744 4.60207 4.63478 4.73565 4.88215 4.91515 5.04790 5.07980 5.11185 5.17989 5.22754 5.38928 5.56047 5.58724 5.75405 5.81039 5.87054 5.94710 5.96071 6.01654 6.11568 6.24114 6.38676 6.48179 6.65323 6.78323 6.83268 6.87423 7.44263 7.71067 7.73739 8.16639 8.43119 9.54343 10.11619 10.46581 11.46876 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033696 B = 0.001663 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.748999 B =16832.912587 C =17105.236235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.730 5.730 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.128 3.872 15 N -0.723 5.723 16 C 0.494 3.506 17 O -0.533 6.533 18 C 0.099 3.901 19 N -0.597 5.597 20 C 0.066 3.934 21 C 0.596 3.404 22 O -0.521 6.521 23 C -0.267 4.267 24 C -0.052 4.052 25 C -0.151 4.151 26 C -0.255 4.255 27 S 0.223 5.777 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.021 0.979 32 H 0.022 0.978 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.401 0.599 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.153 0.847 44 H 0.142 0.858 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.440 -3.963 -34.157 34.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.004 3.996 15 N -0.376 5.376 16 C 0.278 3.722 17 O -0.409 6.409 18 C -0.027 4.027 19 N -0.329 5.329 20 C -0.079 4.079 21 C 0.384 3.616 22 O -0.398 6.398 23 C -0.387 4.387 24 C -0.086 4.086 25 C -0.181 4.181 26 C -0.392 4.392 27 S 0.491 5.509 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.235 0.765 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.171 0.829 44 H 0.160 0.840 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.014 -4.925 -33.788 34.204 hybrid contribution 1.414 0.651 0.865 1.781 sum -0.600 -4.274 -32.923 33.205 Atomic orbital electron populations 1.21785 0.94662 1.01868 1.01479 1.21552 0.96681 1.00564 0.94168 0.90478 1.20575 0.96637 0.94184 0.85399 1.42325 1.66950 1.27666 1.00557 1.19199 1.28864 1.05321 0.83700 0.91214 1.24730 1.01081 0.97333 0.97849 1.69644 1.43763 1.16328 1.28601 0.86252 0.78037 0.77677 0.84128 1.21272 1.21694 1.21286 1.21408 1.00186 0.95133 0.82852 1.46028 1.57751 1.27927 1.05861 1.21056 0.79928 0.86271 0.84991 1.90713 1.39126 1.24465 1.86555 1.21368 1.01197 0.97280 0.82897 1.47120 1.16856 1.41421 1.27493 1.22013 0.95897 0.91761 0.98215 1.16955 0.80732 0.80644 0.83246 1.90853 1.52325 1.37042 1.59598 1.24512 0.99926 1.12355 1.01937 1.20815 0.95912 0.97447 0.94419 1.20029 0.99973 1.00982 0.97133 1.25838 1.00426 1.06733 1.06197 1.83465 1.12441 1.45885 1.09121 0.92874 0.91147 0.93909 0.96138 0.96033 0.78207 0.93496 0.91423 0.91417 0.76483 0.86972 0.86576 0.91250 0.90195 0.88947 0.82927 0.84037 0.81755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.94 37.15 0.33 -1.68 16 2 C -0.11 -1.70 2.46 -90.62 -0.22 -1.92 16 3 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 4 C 0.16 3.22 5.65 -4.04 -0.02 3.19 16 5 N -0.73 -18.40 5.33 -59.91 -0.32 -18.72 16 6 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 7 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 10 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 14 C 0.13 1.79 5.06 -4.04 -0.02 1.77 16 15 N -0.72 -8.25 5.28 -60.29 -0.32 -8.57 16 16 C 0.49 6.18 7.90 -10.98 -0.09 6.09 16 17 O -0.53 -8.98 16.43 5.56 0.09 -8.89 16 18 C 0.10 0.87 5.82 -5.19 -0.03 0.84 16 19 N -0.60 -5.83 2.36 -184.55 -0.44 -6.27 16 20 C 0.07 0.41 8.83 59.84 0.53 0.94 16 21 C 0.60 7.38 7.62 -12.89 -0.10 7.28 16 22 O -0.52 -8.31 16.49 5.19 0.09 -8.22 16 23 C -0.27 -2.68 6.21 -36.80 -0.23 -2.90 16 24 C -0.05 -0.49 10.02 -40.44 -0.41 -0.90 16 25 C -0.15 -1.07 10.15 -41.42 -0.42 -1.49 16 26 C -0.25 -1.55 10.92 29.18 0.32 -1.23 16 27 S 0.22 1.39 17.89 -107.50 -1.92 -0.54 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.19 7.18 -51.93 -0.37 0.82 16 30 H 0.04 0.47 7.18 -51.93 -0.37 0.10 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.38 10.02 6.85 -40.82 -0.28 9.74 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.40 3.49 7.65 -40.82 -0.31 3.17 16 38 H 0.11 0.53 8.07 -51.93 -0.42 0.11 16 39 H 0.12 1.00 7.51 -51.93 -0.39 0.61 16 40 H 0.07 0.27 7.50 -51.93 -0.39 -0.12 16 41 H 0.08 0.53 5.11 -27.35 -0.14 0.39 16 42 H 0.09 0.49 8.03 -51.93 -0.42 0.07 16 43 H 0.15 1.42 8.06 -52.48 -0.42 1.00 16 44 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 45 H 0.16 0.61 8.06 -52.48 -0.42 0.18 16 LS Contribution 387.03 15.07 5.83 5.83 Total: -1.00 -37.13 387.03 -8.33 -45.46 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -6.44 Total: 7.27 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -0.60 Total: 2.57 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -0.35 Total: -61.02 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: 0.18 Total: -17.12 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -1.92 Total: -0.54 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.13 -8.33 -45.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753617661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.402 kcal (2) G-P(sol) polarization free energy of solvation -37.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds