Wall clock time and date at job start Sat Apr 11 2020 05:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47380 * 2 1 4 4 C 1.53003 * 109.47243 * 119.99246 * 2 1 3 5 5 N 1.46501 * 109.47533 * 174.99920 * 4 2 1 6 6 C 1.34774 * 120.00166 * 180.02562 * 5 4 2 7 7 O 1.21277 * 120.00244 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99696 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47036 * 179.97438 * 8 6 5 10 10 C 1.76194 * 100.00002 * 180.02562 * 9 8 6 11 11 H 1.07999 * 120.00032 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99951 * 180.02562 * 10 9 8 13 13 N 1.31633 * 120.00220 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00092 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.47446 * 89.99506 * 14 12 10 16 16 H 1.48497 * 109.47318 * 210.00249 * 14 12 10 17 17 H 1.48508 * 109.46905 * 329.99647 * 14 12 10 18 18 N 1.46494 * 109.47305 * 239.99352 * 2 1 3 19 19 C 1.34784 * 119.99635 * 85.00093 * 18 2 1 20 20 O 1.21279 * 119.99925 * 359.97438 * 19 18 2 21 21 C 1.50700 * 119.99961 * 180.02562 * 19 18 2 22 22 H 1.08997 * 109.47392 * 59.99562 * 21 19 18 23 23 C 1.53003 * 109.46986 * 300.00090 * 21 19 18 24 24 N 1.46497 * 109.47128 * 180.02562 * 21 19 18 25 25 C 1.36338 * 125.63732 * 59.69400 * 24 21 19 26 26 C 1.34853 * 108.21506 * 179.83284 * 25 24 21 27 27 C 1.40889 * 107.41937 * 0.42056 * 26 25 24 28 28 C 1.34851 * 107.41561 * 359.74087 * 27 26 25 29 29 H 1.08996 * 109.46997 * 300.00209 * 1 2 3 30 30 H 1.08991 * 109.46933 * 60.00690 * 1 2 3 31 31 H 1.09000 * 109.46920 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47461 * 295.00683 * 4 2 1 33 33 H 1.09011 * 109.46575 * 55.00317 * 4 2 1 34 34 H 0.97006 * 119.99214 * 0.02562 * 5 4 2 35 35 H 1.09000 * 109.47483 * 300.00319 * 8 6 5 36 36 H 1.08999 * 109.47159 * 59.99952 * 8 6 5 37 37 H 0.96998 * 120.00112 * 180.02562 * 13 12 10 38 38 H 0.96995 * 120.00292 * 265.27526 * 18 2 1 39 39 H 1.08998 * 109.47453 * 59.99968 * 23 21 19 40 40 H 1.08996 * 109.47248 * 180.02562 * 23 21 19 41 41 H 1.09005 * 109.46932 * 299.99942 * 23 21 19 42 42 H 1.07996 * 125.88952 * 359.95788 * 25 24 21 43 43 H 1.08005 * 126.28670 * 180.16433 * 26 25 24 44 44 H 1.07999 * 126.28957 * 179.73588 * 27 26 25 45 45 H 1.07997 * 125.89068 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7211 1.2494 5 7 3.5001 -0.8263 1.1907 6 6 4.1730 -1.4289 2.1909 7 8 3.5699 -1.8846 3.1393 8 6 5.6750 -1.5366 2.1308 9 16 6.2783 -2.3898 3.6087 10 6 8.0101 -2.3756 3.2846 11 1 8.3865 -1.9219 2.3797 12 6 8.8908 -2.9475 4.1923 13 7 10.1847 -2.9365 3.9505 14 14 8.2399 -3.7329 5.7572 15 1 7.9537 -5.1687 5.5086 16 1 9.2563 -3.6098 6.8328 17 1 6.9919 -3.0445 6.1745 18 7 2.0184 -0.6907 -1.1960 19 6 2.1471 -0.0184 -2.3571 20 8 1.8582 1.1582 -2.4117 21 6 2.6489 -0.7290 -3.5876 22 1 1.9761 -1.5508 -3.8324 23 6 4.0514 -1.2800 -3.3221 24 7 2.6989 0.2125 -4.7089 25 6 3.4339 1.3600 -4.7506 26 6 3.2227 1.9528 -5.9432 27 6 2.3169 1.1466 -6.6605 28 6 2.0135 0.0888 -5.8811 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7516 -0.1582 2.1370 33 1 1.6054 -1.7197 1.2953 34 1 3.9825 -0.4621 0.4320 35 1 5.9638 -2.0989 1.2428 36 1 6.1093 -0.5379 2.0855 37 1 10.8000 -3.3366 4.5846 38 1 2.2453 -1.6328 -1.1534 39 1 4.0147 -1.9803 -2.4877 40 1 4.4146 -1.7936 -4.2122 41 1 4.7243 -0.4581 -3.0773 42 1 4.0762 1.7293 -3.9648 43 1 3.6635 2.8780 -6.2841 44 1 1.9356 1.3403 -7.6522 45 1 1.3429 -0.7170 -6.1404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758771237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:29 Heat of formation + Delta-G solvation = -22.166969 kcal Electronic energy + Delta-G solvation = -26474.743438 eV Core-core repulsion = 22619.625292 eV Total energy + Delta-G solvation = -3855.118147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.69939 -40.21624 -39.27619 -36.73368 -34.78697 -33.85255 -32.49302 -31.58512 -29.71050 -29.44462 -28.88078 -26.22578 -25.62659 -25.14768 -22.32205 -21.16754 -20.67029 -20.59314 -19.98453 -18.34901 -17.81433 -17.45901 -16.77160 -16.49006 -16.06100 -15.60823 -15.25137 -15.02611 -14.74779 -14.46515 -14.08658 -13.92514 -13.81861 -13.65935 -13.26939 -13.17855 -13.00334 -12.90113 -12.84488 -12.67256 -12.49151 -12.41399 -12.28342 -12.06585 -12.01905 -11.47246 -11.32137 -11.06002 -10.67918 -10.39095 -9.92252 -9.74085 -9.62402 -9.18931 -9.05227 -8.82397 -8.57587 -8.28602 -6.98927 -6.34233 -4.06836 1.93248 2.01033 2.39762 2.64964 2.80096 2.85017 2.93663 3.21442 3.28523 3.45432 3.56253 3.95983 4.16178 4.22976 4.27611 4.28074 4.62050 4.67961 4.69814 4.80735 4.99785 5.01964 5.04729 5.08793 5.14327 5.17526 5.22921 5.39334 5.44343 5.48315 5.50550 5.55769 5.65785 5.74935 5.90851 5.92710 6.13370 6.14263 6.31983 6.82578 6.83952 7.04058 7.15212 7.41938 7.61865 7.88647 8.33193 8.36053 9.11675 10.74920 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015378 B = 0.002278 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.402417 B =12288.592518 C =13699.301754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 H 0.097 0.903 4 C 0.113 3.887 5 N -0.738 5.738 6 C 0.531 3.469 7 O -0.516 6.516 8 C -0.125 4.125 9 S -0.140 6.140 10 C -0.523 4.523 11 H 0.088 0.912 12 C 0.096 3.904 13 N -0.879 5.879 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 N -0.722 5.722 19 C 0.504 3.496 20 O -0.514 6.514 21 C 0.116 3.884 22 H 0.123 0.877 23 C -0.162 4.162 24 N -0.434 5.434 25 C 0.018 3.982 26 C -0.209 4.209 27 C -0.196 4.196 28 C -0.022 4.022 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.399 0.601 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.271 0.729 38 H 0.404 0.596 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.155 0.845 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.953 4.563 -18.029 26.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 H 0.115 0.885 4 C -0.011 4.011 5 N -0.394 5.394 6 C 0.317 3.683 7 O -0.391 6.391 8 C -0.275 4.275 9 S 0.086 5.914 10 C -0.670 4.670 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.516 5.516 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 N -0.376 5.376 19 C 0.288 3.712 20 O -0.388 6.388 21 C 0.009 3.991 22 H 0.141 0.859 23 C -0.220 4.220 24 N -0.111 5.111 25 C -0.112 4.112 26 C -0.233 4.233 27 C -0.221 4.221 28 C -0.150 4.150 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.234 0.766 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.240 0.760 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.173 0.827 43 H 0.151 0.849 44 H 0.151 0.849 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -20.003 4.387 -16.126 26.065 hybrid contribution 1.008 -0.140 -0.770 1.277 sum -18.995 4.247 -16.896 25.774 Atomic orbital electron populations 1.22104 0.93817 1.02780 1.03272 1.21286 0.95094 0.97895 0.82938 0.88457 1.21634 0.80995 1.01428 0.97082 1.45961 1.06850 1.61932 1.24637 1.20307 0.89488 0.76822 0.81673 1.90714 1.69840 1.46061 1.32443 1.23278 0.93236 1.05606 1.05417 1.84804 1.07013 1.75267 1.24323 1.22299 0.88590 1.44799 1.11322 0.89383 1.24722 0.94110 0.94529 0.97967 1.69935 1.01551 1.43343 1.36724 0.86734 0.80819 0.81199 0.83084 1.19198 1.19896 1.15943 1.46087 1.67778 1.14356 1.09403 1.20670 0.78185 0.87777 0.84600 1.90800 1.48291 1.15385 1.84298 1.21267 1.00756 0.91789 0.85278 0.85936 1.22176 0.93397 1.02393 1.04043 1.43691 1.36217 1.18922 1.12266 1.21662 1.01091 0.88671 0.99744 1.20863 1.04954 1.02115 0.95377 1.20857 1.03873 0.96725 1.00628 1.21750 1.03263 1.02886 0.87099 0.90864 0.91596 0.91912 0.89752 0.90745 0.76646 0.88542 0.88452 0.91884 0.76050 0.89826 0.90130 0.90760 0.82722 0.84873 0.84875 0.82451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 9.48 37.16 0.35 -0.69 16 2 C 0.13 0.93 2.73 -67.93 -0.19 0.75 16 3 H 0.10 0.84 7.58 -51.93 -0.39 0.45 16 4 C 0.11 0.98 5.23 -4.04 -0.02 0.96 16 5 N -0.74 -7.80 5.39 -60.29 -0.32 -8.12 16 6 C 0.53 8.46 7.85 -10.99 -0.09 8.37 16 7 O -0.52 -10.26 15.86 5.56 0.09 -10.17 16 8 C -0.12 -2.24 6.16 36.01 0.22 -2.02 16 9 S -0.14 -3.42 18.55 -107.50 -1.99 -5.41 16 10 C -0.52 -14.64 10.04 30.94 0.31 -14.33 16 11 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 12 C 0.10 2.74 5.50 -17.43 -0.10 2.64 16 13 N -0.88 -26.06 13.97 55.49 0.78 -25.29 16 14 Si 0.86 21.31 27.74 -169.99 -4.72 16.60 16 15 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.24 -5.84 6.74 56.52 0.38 -5.46 16 18 N -0.72 -4.32 4.41 -53.81 -0.24 -4.56 16 19 C 0.50 4.06 7.08 -10.98 -0.08 3.99 16 20 O -0.51 -6.30 15.10 5.56 0.08 -6.22 16 21 C 0.12 0.73 3.36 -69.08 -0.23 0.50 16 22 H 0.12 0.48 8.06 -51.93 -0.42 0.06 16 23 C -0.16 -0.83 9.14 37.16 0.34 -0.49 16 24 N -0.43 -3.91 2.40 -111.26 -0.27 -4.18 16 25 C 0.02 0.18 9.56 -16.75 -0.16 0.02 16 26 C -0.21 -2.19 10.86 -39.78 -0.43 -2.63 16 27 C -0.20 -1.91 10.86 -39.78 -0.43 -2.35 16 28 C -0.02 -0.19 11.39 -16.75 -0.19 -0.38 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 34 H 0.40 3.41 8.14 -40.82 -0.33 3.08 16 35 H 0.10 1.57 8.14 -51.92 -0.42 1.15 16 36 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 37 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.40 1.67 8.03 -40.82 -0.33 1.35 16 39 H 0.08 0.29 7.57 -51.93 -0.39 -0.10 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.46 7.92 -51.93 -0.41 0.04 16 42 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 43 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 44 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 45 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 394.61 15.07 5.95 5.95 Total: -1.00 -36.39 394.61 -8.26 -44.65 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.93 Total: 2.40 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -0.69 Total: -5.64 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: -0.05 Total: -42.14 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: 0.17 Total: -16.39 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.72 Total: 16.60 kcal Atomic # 16 Polarization: -3.42 SS G_CDS: -1.99 Total: -5.41 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.39 -8.26 -44.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758771237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.480 kcal (2) G-P(sol) polarization free energy of solvation -36.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds