Wall clock time and date at job start Sat Apr 11 2020 05:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00386 * 2 1 4 4 C 1.53007 * 109.47220 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47099 * 64.99614 * 4 3 2 6 6 C 1.34774 * 120.00423 * 270.06917 * 5 4 3 7 7 C 1.50704 * 119.99755 * 4.83738 * 6 5 4 8 8 O 1.21284 * 120.00376 * 184.83315 * 6 5 4 9 9 C 1.39002 * 119.99978 * 90.07464 * 5 4 3 10 10 N 1.29624 * 124.94594 * 185.47721 * 9 5 4 11 11 C 1.31991 * 116.91428 * 180.17612 * 10 9 5 12 12 C 1.50696 * 122.71297 * 179.79559 * 11 10 9 13 13 N 1.46497 * 109.47366 * 274.70795 * 12 11 10 14 14 C 1.36939 * 120.00376 * 89.99837 * 13 12 11 15 15 H 1.07995 * 120.00165 * 219.07663 * 14 13 12 16 16 C 1.38811 * 119.99756 * 39.07380 * 14 13 12 17 17 N 1.31614 * 119.99892 * 201.96416 * 16 14 13 18 18 Si 1.86807 * 120.00005 * 21.96047 * 16 14 13 19 19 H 1.48496 * 109.47063 * 265.10500 * 18 16 14 20 20 H 1.48496 * 109.46902 * 25.10365 * 18 16 14 21 21 H 1.48498 * 109.46649 * 145.10054 * 18 16 14 22 22 C 1.46503 * 119.99826 * 270.00287 * 13 12 11 23 23 C 1.53000 * 117.49740 * 183.76939 * 22 13 12 24 24 C 1.52996 * 60.00056 * 252.50774 * 23 22 13 25 25 C 1.33439 * 114.56797 * 359.52334 * 11 10 9 26 26 S 1.70972 * 124.94157 * 5.15996 * 9 5 4 27 27 H 1.09003 * 109.46445 * 300.00162 * 1 2 3 28 28 H 1.08998 * 109.47027 * 59.99156 * 1 2 3 29 29 H 1.08992 * 109.47306 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47203 * 60.00503 * 3 2 1 31 31 H 1.08999 * 109.47192 * 299.99956 * 3 2 1 32 32 H 1.08998 * 109.46685 * 305.00046 * 4 3 2 33 33 H 1.08994 * 109.47337 * 185.00012 * 4 3 2 34 34 H 1.08994 * 109.47092 * 5.44299 * 7 6 5 35 35 H 1.08993 * 109.47514 * 125.45030 * 7 6 5 36 36 H 1.09004 * 109.47143 * 245.44812 * 7 6 5 37 37 H 1.09000 * 109.47160 * 154.70553 * 12 11 10 38 38 H 1.09006 * 109.47136 * 34.70710 * 12 11 10 39 39 H 0.97004 * 119.99883 * 179.97438 * 17 16 14 40 40 H 1.09006 * 115.55044 * 329.47042 * 22 13 12 41 41 H 1.09004 * 117.50005 * 359.97438 * 23 22 13 42 42 H 1.09003 * 117.50320 * 145.01855 * 23 22 13 43 43 H 1.08999 * 117.49891 * 252.51341 * 24 23 22 44 44 H 1.08998 * 117.52109 * 107.47640 * 24 23 22 45 45 H 1.08004 * 125.96798 * 180.22679 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.0935 -0.7758 -1.3359 7 6 3.6691 -1.6428 -0.1787 8 8 4.5410 -1.2839 -2.3422 9 6 4.2720 1.3577 -2.3549 10 7 4.5706 0.9092 -3.5338 11 6 4.8284 1.8066 -4.4668 12 6 5.1936 1.4307 -5.8797 13 7 6.6347 1.1799 -5.9613 14 6 7.1238 -0.0804 -5.7430 15 1 8.0452 -0.2147 -5.1958 16 6 6.4354 -1.1852 -6.2250 17 7 6.6279 -2.3687 -5.6823 18 14 5.2356 -0.9921 -7.6437 19 1 3.8621 -0.8104 -7.1092 20 1 5.6129 0.1944 -8.4530 21 1 5.2783 -2.2069 -8.4967 22 6 7.5525 2.2774 -6.2764 23 6 9.0353 1.9350 -6.4343 24 6 8.5530 2.6939 -5.1964 25 6 4.7337 3.0737 -4.0591 26 16 4.2882 3.0673 -2.3547 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6888 1.8463 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 3.8515 0.5681 0.8409 33 1 3.9787 2.1763 0.0889 34 1 3.2073 -1.0228 0.5896 35 1 2.9515 -2.3862 -0.5256 36 1 4.5418 -2.1466 0.2371 37 1 4.9280 2.2459 -6.5528 38 1 4.6512 0.5302 -6.1678 39 1 6.1466 -3.1407 -6.0189 40 1 7.1459 3.0616 -6.9152 41 1 9.3281 0.8932 -6.3033 42 1 9.6047 2.4938 -7.1771 43 1 8.8049 3.7519 -5.1248 44 1 8.5280 2.1516 -4.2512 45 1 4.9014 3.9501 -4.6676 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072960826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:40 Heat of formation + Delta-G solvation = 55.140059 kcal Electronic energy + Delta-G solvation = -28503.382774 eV Core-core repulsion = 24651.616912 eV Total energy + Delta-G solvation = -3851.765862 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.31037 -38.76797 -37.97127 -36.93543 -35.56988 -33.41574 -31.52801 -30.44589 -29.82879 -28.52872 -26.55962 -25.96752 -24.30901 -23.49411 -23.33778 -21.39225 -20.20354 -19.66142 -18.65740 -17.95358 -16.95800 -16.58474 -16.23661 -16.06375 -16.01063 -15.40941 -15.18096 -14.94517 -14.54264 -14.08494 -13.71231 -13.58307 -13.41530 -13.04660 -12.88140 -12.66620 -12.46814 -12.33252 -12.21013 -12.04926 -11.92166 -11.77119 -11.32762 -11.18324 -10.76784 -10.64677 -10.61850 -10.00625 -9.97071 -9.91965 -9.78199 -9.64326 -9.50239 -9.23748 -8.73633 -8.57404 -8.27930 -7.62542 -6.64464 -5.80241 -3.24690 1.31186 1.50717 2.15744 2.85270 2.99946 3.43136 3.46350 3.55776 3.60816 3.68968 4.56447 4.65366 4.68055 4.71356 4.88993 4.97570 5.00228 5.02405 5.10853 5.11869 5.23115 5.41850 5.44789 5.50737 5.56811 5.67259 5.77679 5.81909 5.97082 6.04356 6.05973 6.10098 6.28757 6.36918 6.45427 6.53607 6.65946 6.80748 6.86495 6.97465 7.17643 7.33550 8.17739 8.44624 8.54802 8.69072 9.08540 9.86866 10.20261 11.34022 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.004465 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.426395 B = 6269.038359 C = 7249.573457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.039 3.961 4 C 0.107 3.893 5 N -0.528 5.528 6 C 0.498 3.502 7 C -0.160 4.160 8 O -0.444 6.444 9 C 0.274 3.726 10 N -0.435 5.435 11 C 0.110 3.890 12 C 0.201 3.799 13 N -0.556 5.556 14 C -0.272 4.272 15 H 0.075 0.925 16 C 0.058 3.942 17 N -0.878 5.878 18 Si 0.869 3.131 19 H -0.284 1.284 20 H -0.268 1.268 21 H -0.300 1.300 22 C 0.121 3.879 23 C -0.183 4.183 24 C -0.220 4.220 25 C -0.280 4.280 26 S 0.043 5.957 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.262 0.738 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.009 11.503 14.150 21.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.039 4.039 4 C -0.016 4.016 5 N -0.261 5.261 6 C 0.283 3.717 7 C -0.220 4.220 8 O -0.309 6.309 9 C -0.094 4.094 10 N -0.154 5.154 11 C -0.024 4.024 12 C 0.072 3.928 13 N -0.273 5.273 14 C -0.400 4.400 15 H 0.092 0.908 16 C -0.145 4.145 17 N -0.516 5.516 18 Si 0.699 3.301 19 H -0.211 1.211 20 H -0.193 1.193 21 H -0.228 1.228 22 C 0.012 3.988 23 C -0.221 4.221 24 C -0.261 4.261 25 C -0.420 4.420 26 S 0.291 5.709 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.126 0.874 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.123 0.877 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.103 0.897 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -10.847 10.874 14.242 20.946 hybrid contribution -0.644 0.145 -1.256 1.419 sum -11.491 11.019 12.985 20.545 Atomic orbital electron populations 1.22742 0.80910 1.02932 0.99879 1.87942 1.19838 1.26936 1.95400 1.23048 0.93611 0.85865 1.01424 1.21911 0.93107 1.00306 0.86254 1.45322 1.65419 1.06165 1.09219 1.21220 0.78832 0.81073 0.90544 1.21924 1.03179 0.99995 0.96882 1.91070 1.37857 1.71122 1.30814 1.23882 1.02669 0.91823 0.91051 1.66410 1.15596 1.35653 0.97727 1.21445 0.95169 0.86699 0.99103 1.20041 0.86355 0.99648 0.86747 1.43589 0.99702 1.05569 1.78416 1.18406 1.10252 0.80070 1.31254 0.90792 1.25305 0.97214 0.94951 0.97025 1.69872 1.42595 0.99879 1.39292 0.87038 0.81478 0.77049 0.84553 1.21146 1.19252 1.22834 1.21080 0.86880 0.92887 0.97922 1.23068 0.97804 1.01833 0.99374 1.23338 1.09294 0.98323 0.95136 1.26420 1.18523 1.01686 0.95374 1.83219 1.70566 1.04761 1.12316 0.94075 0.94077 0.89499 0.91479 0.92387 0.87434 0.88329 0.89343 0.88786 0.89353 0.92166 0.90844 0.92815 0.89391 0.87684 0.90405 0.90815 0.89744 0.81278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.38 -3.88 7.76 -35.23 -0.27 -4.15 16 3 C 0.04 0.34 6.28 37.16 0.23 0.57 16 4 C 0.11 1.07 5.41 -4.04 -0.02 1.05 16 5 N -0.53 -8.61 2.66 -117.40 -0.31 -8.92 16 6 C 0.50 9.34 7.50 -10.98 -0.08 9.25 16 7 C -0.16 -2.05 8.89 36.01 0.32 -1.73 16 8 O -0.44 -11.49 15.77 5.55 0.09 -11.40 16 9 C 0.27 5.30 7.65 -87.35 -0.67 4.63 16 10 N -0.43 -10.50 8.69 -11.28 -0.10 -10.60 16 11 C 0.11 2.44 6.32 -84.20 -0.53 1.91 16 12 C 0.20 4.73 4.98 -5.20 -0.03 4.71 16 13 N -0.56 -13.95 2.37 -167.02 -0.40 -14.35 16 14 C -0.27 -8.02 8.77 -15.06 -0.13 -8.16 16 15 H 0.07 2.40 7.17 -52.49 -0.38 2.03 16 16 C 0.06 1.78 5.30 -17.43 -0.09 1.69 16 17 N -0.88 -28.77 13.97 55.49 0.78 -28.00 16 18 Si 0.87 23.48 25.11 -169.99 -4.27 19.21 16 19 H -0.28 -7.68 6.66 56.52 0.38 -7.30 16 20 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.30 -8.15 7.11 56.52 0.40 -7.74 16 22 C 0.12 2.54 6.57 -67.93 -0.45 2.09 16 23 C -0.18 -3.67 9.78 -26.73 -0.26 -3.93 16 24 C -0.22 -4.31 10.35 -26.73 -0.28 -4.59 16 25 C -0.28 -4.96 11.09 29.05 0.32 -4.64 16 26 S 0.04 0.65 21.66 -107.50 -2.33 -1.68 16 27 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.11 0.83 6.29 -51.93 -0.33 0.50 16 33 H 0.10 0.83 6.96 -51.93 -0.36 0.47 16 34 H 0.09 0.87 4.18 -51.93 -0.22 0.65 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.19 8.03 -51.93 -0.42 0.78 16 38 H 0.07 1.95 3.43 -51.93 -0.18 1.77 16 39 H 0.26 8.20 8.31 -40.82 -0.34 7.86 16 40 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 41 H 0.10 2.41 6.62 -51.93 -0.34 2.06 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 45 H 0.17 2.51 8.06 -52.48 -0.42 2.09 16 LS Contribution 377.36 15.07 5.69 5.69 Total: -1.00 -39.40 377.36 -8.13 -47.53 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.45 Total: 2.45 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -0.55 Total: 4.22 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -0.03 Total: -61.87 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.19 Total: -15.55 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -4.27 Total: 19.21 kcal Atomic # 16 Polarization: 0.65 SS G_CDS: -2.33 Total: -1.68 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -39.40 -8.13 -47.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072960826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.671 kcal (2) G-P(sol) polarization free energy of solvation -39.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds