Wall clock time and date at job start Sat Apr 11 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.47187 * 2 1 4 4 C 1.46499 * 120.00159 * 269.99922 * 3 2 1 5 5 C 1.50696 * 109.47357 * 270.00139 * 4 3 2 6 6 H 1.08001 * 119.99896 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00215 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00076 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00001 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47072 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47353 * 120.00182 * 9 7 5 12 12 H 1.48503 * 109.46842 * 239.99992 * 9 7 5 13 13 C 1.34779 * 120.00394 * 90.00262 * 3 2 1 14 14 O 1.21276 * 120.00330 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99387 * 359.97438 * 13 3 2 16 16 C 1.50703 * 109.46981 * 180.02562 * 15 13 3 17 17 C 1.33442 * 122.71850 * 124.94811 * 16 15 13 18 18 S 1.76172 * 108.06148 * 180.02562 * 17 16 15 19 19 C 1.70968 * 90.34164 * 0.02562 * 18 17 16 20 20 N 1.39006 * 124.94258 * 179.97438 * 19 18 17 21 21 C 1.34776 * 120.00092 * 0.03053 * 20 19 18 22 22 O 1.21286 * 119.99984 * 359.97438 * 21 20 19 23 23 C 1.50698 * 119.99937 * 179.97438 * 21 20 19 24 24 C 1.53002 * 109.47045 * 179.97438 * 23 21 20 25 25 C 1.52992 * 109.47100 * 299.99825 * 23 21 20 26 26 N 1.29623 * 110.10783 * 359.97438 * 19 18 17 27 27 H 1.08995 * 109.47673 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47141 * 300.00445 * 1 2 3 29 29 H 1.09000 * 109.47500 * 59.99528 * 1 2 3 30 30 H 1.09000 * 109.46632 * 239.99931 * 2 1 3 31 31 H 1.09002 * 109.47001 * 120.00318 * 2 1 3 32 32 H 1.09005 * 109.46758 * 30.00135 * 4 3 2 33 33 H 1.09001 * 109.47566 * 150.00125 * 4 3 2 34 34 H 0.96999 * 120.00207 * 180.02562 * 8 7 5 35 35 H 1.08993 * 109.47256 * 60.00289 * 15 13 3 36 36 H 1.08999 * 109.47169 * 299.99514 * 15 13 3 37 37 H 1.07997 * 125.96916 * 0.04862 * 17 16 15 38 38 H 0.96995 * 119.99839 * 180.02562 * 20 19 18 39 39 H 1.08995 * 109.47136 * 59.99962 * 23 21 20 40 40 H 1.08995 * 109.47051 * 60.00074 * 24 23 21 41 41 H 1.09005 * 109.46801 * 180.02562 * 24 23 21 42 42 H 1.09004 * 109.46844 * 299.99776 * 24 23 21 43 43 H 1.09003 * 109.47544 * 300.00080 * 25 23 21 44 44 H 1.09001 * 109.47526 * 60.00245 * 25 23 21 45 45 H 1.09005 * 109.47462 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0958 7 6 4.1491 2.3896 -2.8780 8 7 3.3491 3.1257 -3.6180 9 14 5.9131 2.0954 -3.4176 10 1 6.6008 1.2404 -2.4169 11 1 5.9202 1.4163 -4.7381 12 1 6.6209 3.3964 -3.5263 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9913 1.3063 2.4723 16 6 2.3173 2.2297 3.6178 17 6 1.4427 2.5176 4.5835 18 16 2.2204 3.6238 5.7128 19 6 3.6495 3.5928 4.7749 20 7 4.8121 4.2944 5.0720 21 6 4.8679 5.0714 6.1718 22 8 3.9035 5.1588 6.9021 23 6 6.1286 5.8315 6.4942 24 6 5.9273 6.6294 7.7840 25 6 7.2849 4.8467 6.6783 26 7 3.4908 2.8199 3.7464 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5816 1.6877 -2.0283 33 1 2.0956 3.1410 -1.1384 34 1 3.6750 3.5156 -4.4443 35 1 2.6212 0.4186 2.5302 36 1 0.9432 1.0126 2.5299 37 1 0.4343 2.1385 4.6598 38 1 5.5833 4.2247 4.4878 39 1 6.3599 6.5147 5.6771 40 1 5.6958 5.9465 8.6013 41 1 6.8391 7.1796 8.0169 42 1 5.1036 7.3311 7.6523 43 1 7.0536 4.1634 7.4955 44 1 7.4282 4.2786 5.7592 45 1 8.1969 5.3965 6.9111 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103209462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:46 Heat of formation + Delta-G solvation = -29.367746 kcal Electronic energy + Delta-G solvation = -26938.271241 eV Core-core repulsion = 23082.840845 eV Total energy + Delta-G solvation = -3855.430396 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.80366 -39.79830 -38.47223 -35.33144 -35.06315 -34.95925 -32.81026 -31.26427 -30.01352 -28.35139 -27.54951 -26.56207 -25.39069 -23.30618 -22.94226 -22.31134 -21.18913 -19.63242 -18.58120 -17.84862 -17.28981 -16.64748 -16.47957 -16.19186 -15.98618 -15.47643 -15.00507 -14.71610 -14.39288 -14.24515 -13.90140 -13.61019 -13.28889 -13.27240 -12.90924 -12.87607 -12.79180 -12.53757 -12.42321 -11.98084 -11.83755 -11.61885 -11.55185 -11.47358 -11.28861 -11.13453 -10.91916 -10.84343 -10.65330 -10.48488 -10.07858 -10.07649 -9.55567 -9.49217 -9.00207 -8.80808 -8.39552 -8.14390 -7.56314 -5.99808 -4.03709 0.84111 1.25853 1.96486 2.08163 2.48740 3.09828 3.31624 3.38763 3.43176 3.57175 4.08782 4.10597 4.42164 4.47930 4.48780 4.57806 4.90694 5.18472 5.21736 5.22781 5.27872 5.34664 5.39975 5.41518 5.43343 5.51381 5.61685 5.67569 5.70554 5.74167 5.81310 5.88285 5.90252 6.08385 6.28017 6.28649 6.53622 6.74605 7.14530 7.51470 7.54969 7.64248 7.97647 7.99806 8.30080 8.52262 8.97414 9.22580 9.61260 11.08290 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011182 B = 0.003082 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.396026 B = 9081.569735 C =11062.589353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.601 5.601 4 C 0.248 3.752 5 C -0.521 4.521 6 H 0.057 0.943 7 C 0.059 3.941 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.511 3.489 14 O -0.524 6.524 15 C -0.070 4.070 16 C 0.122 3.878 17 C -0.316 4.316 18 S 0.217 5.783 19 C 0.240 3.760 20 N -0.621 5.621 21 C 0.515 3.485 22 O -0.506 6.506 23 C -0.106 4.106 24 C -0.134 4.134 25 C -0.149 4.149 26 N -0.474 5.474 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.031 0.969 33 H 0.041 0.959 34 H 0.262 0.738 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.174 0.826 38 H 0.424 0.576 39 H 0.107 0.893 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.907 -0.963 21.928 21.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.334 5.334 4 C 0.129 3.871 5 C -0.560 4.560 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.296 3.704 14 O -0.400 6.400 15 C -0.113 4.113 16 C -0.011 4.011 17 C -0.456 4.456 18 S 0.467 5.533 19 C -0.127 4.127 20 N -0.270 5.270 21 C 0.302 3.698 22 O -0.380 6.380 23 C -0.127 4.127 24 C -0.192 4.192 25 C -0.207 4.207 26 N -0.195 5.195 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.192 0.808 38 H 0.263 0.737 39 H 0.125 0.875 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.658 0.337 22.864 22.876 hybrid contribution 1.180 -0.845 -1.749 2.273 sum 1.838 -0.509 21.115 21.201 Atomic orbital electron populations 1.22233 0.96926 1.01327 1.02302 1.21403 0.93395 0.84383 1.02635 1.48227 1.64363 1.13195 1.07616 1.19226 0.96150 0.93575 0.78185 1.21496 0.96991 1.31520 1.05992 0.92439 1.24936 0.97765 0.95034 0.96478 1.69944 1.35556 1.33734 1.14338 0.86462 0.84828 0.77991 0.78254 1.19809 1.21019 1.20972 1.19957 0.78855 0.87077 0.84521 1.90685 1.44513 1.17892 1.86863 1.20402 1.03182 0.97403 0.90317 1.19189 0.87540 0.98192 0.96149 1.27128 1.05996 1.09827 1.02614 1.84575 1.03044 1.41719 1.24005 1.23373 0.93921 0.99060 0.96382 1.42879 1.13520 1.43922 1.26714 1.21204 0.90914 0.78582 0.79124 1.90645 1.37195 1.62207 1.47996 1.21289 0.91793 0.97961 1.01707 1.21654 1.02304 0.99947 0.95254 1.21858 0.97061 0.98811 1.02945 1.66039 1.24404 1.10967 1.18115 0.92219 0.93090 0.92080 0.90035 0.91764 0.95132 0.94070 0.92879 0.87887 0.87948 0.80819 0.73667 0.87456 0.91644 0.91475 0.91604 0.91716 0.91741 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.16 0.38 -1.87 16 2 C 0.11 1.70 5.93 -4.05 -0.02 1.68 16 3 N -0.60 -12.95 2.46 -175.06 -0.43 -13.38 16 4 C 0.25 6.61 5.16 -5.20 -0.03 6.59 16 5 C -0.52 -15.07 9.39 -34.44 -0.32 -15.40 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 9 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 13 C 0.51 11.06 7.64 -10.98 -0.08 10.98 16 14 O -0.52 -13.88 15.02 5.56 0.08 -13.80 16 15 C -0.07 -1.12 4.75 -29.03 -0.14 -1.25 16 16 C 0.12 2.06 5.63 -84.20 -0.47 1.59 16 17 C -0.32 -4.43 11.05 29.06 0.32 -4.11 16 18 S 0.22 3.04 20.22 -107.50 -2.17 0.86 16 19 C 0.24 3.79 8.19 -87.35 -0.72 3.07 16 20 N -0.62 -7.73 5.30 -13.07 -0.07 -7.80 16 21 C 0.52 5.70 7.12 -10.99 -0.08 5.63 16 22 O -0.51 -6.86 13.45 5.55 0.07 -6.78 16 23 C -0.11 -0.76 3.26 -91.78 -0.30 -1.06 16 24 C -0.13 -0.90 8.48 37.16 0.32 -0.59 16 25 C -0.15 -0.84 9.09 37.15 0.34 -0.51 16 26 N -0.47 -8.71 9.73 -11.28 -0.11 -8.82 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.63 7.22 -51.92 -0.37 0.26 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 31 H 0.06 0.85 6.44 -51.93 -0.33 0.51 16 32 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.10 1.46 7.40 -51.93 -0.38 1.07 16 36 H 0.10 1.27 7.07 -51.93 -0.37 0.91 16 37 H 0.17 1.87 8.06 -52.49 -0.42 1.44 16 38 H 0.42 4.52 8.24 -40.82 -0.34 4.18 16 39 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.35 7.57 -51.93 -0.39 -0.04 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 388.42 15.07 5.85 5.85 Total: -1.00 -37.53 388.42 -8.72 -46.25 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.76 Total: 0.39 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -0.91 Total: 6.38 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.13 Total: -56.34 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: 0.16 Total: -20.58 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -2.17 Total: 0.86 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.53 -8.72 -46.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103209462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.885 kcal (2) G-P(sol) polarization free energy of solvation -37.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds