Wall clock time and date at job start Sat Apr 11 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 111.00027 * 2 1 4 4 C 1.46893 * 111.00064 * 123.95868 * 2 1 3 5 5 C 1.52997 * 109.47363 * 66.04415 * 4 2 1 6 6 O 1.42895 * 109.47184 * 65.00142 * 5 4 2 7 7 C 1.35677 * 117.00271 * 180.02562 * 6 5 4 8 8 C 1.38926 * 119.68708 * 180.29925 * 7 6 5 9 9 C 1.38379 * 119.11003 * 180.24664 * 8 7 6 10 10 C 1.50694 * 120.75764 * 179.72742 * 9 8 7 11 11 N 1.46499 * 109.47550 * 269.72711 * 10 9 8 12 12 C 1.34777 * 120.00199 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99750 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99928 * 180.27479 * 12 11 10 15 15 S 1.80999 * 109.46903 * 179.72354 * 14 12 11 16 16 C 1.76200 * 99.99730 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00351 * 0.02562 * 16 15 14 18 18 C 1.38796 * 120.00095 * 179.97438 * 16 15 14 19 19 N 1.31634 * 119.99941 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00384 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46990 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47522 * 119.99735 * 20 18 16 23 23 H 1.48500 * 109.47073 * 240.00101 * 20 18 16 24 24 C 1.38833 * 118.48528 * 359.46116 * 9 8 7 25 25 C 1.38052 * 119.28857 * 0.27014 * 24 9 8 26 26 N 1.31960 * 120.83682 * 0.02562 * 25 24 9 27 27 H 1.08994 * 109.46821 * 296.04467 * 1 2 3 28 28 H 1.09002 * 109.46925 * 56.04173 * 1 2 3 29 29 H 1.08996 * 109.47085 * 176.04584 * 1 2 3 30 30 H 1.09000 * 109.47080 * 183.95461 * 3 2 1 31 31 H 1.08998 * 109.47636 * 303.95567 * 3 2 1 32 32 H 1.09006 * 109.46959 * 63.95676 * 3 2 1 33 33 H 1.09005 * 109.47387 * 306.04278 * 4 2 1 34 34 H 1.09007 * 109.47542 * 186.04518 * 4 2 1 35 35 H 1.08998 * 109.47304 * 304.99631 * 5 4 2 36 36 H 1.09006 * 109.47442 * 184.99964 * 5 4 2 37 37 H 1.07998 * 120.44430 * 359.97438 * 8 7 6 38 38 H 1.08998 * 109.47333 * 149.72306 * 10 9 8 39 39 H 1.09002 * 109.47271 * 29.72739 * 10 9 8 40 40 H 0.97000 * 119.99484 * 359.97438 * 11 10 9 41 41 H 1.09004 * 109.46965 * 299.72211 * 14 12 11 42 42 H 1.08994 * 109.46990 * 59.72065 * 14 12 11 43 43 H 0.97002 * 120.00288 * 179.97438 * 19 18 16 44 44 H 1.07994 * 120.35433 * 180.24876 * 24 9 8 45 45 H 1.08000 * 119.57884 * 179.97438 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9702 6 8 2.2955 -2.7696 -0.1802 7 6 2.0777 -4.0764 -0.4725 8 6 2.7004 -4.6479 -1.5751 9 6 2.4658 -5.9804 -1.8652 10 6 3.1170 -6.6363 -3.0554 11 7 2.2492 -6.4937 -4.2271 12 6 2.6293 -7.0075 -5.4137 13 8 3.6899 -7.5875 -5.5116 14 6 1.7394 -6.8553 -6.6204 15 16 2.5243 -7.6380 -8.0513 16 6 1.3038 -7.3199 -9.2817 17 1 0.4039 -6.7816 -9.0233 18 6 1.4994 -7.7602 -10.5834 19 7 2.5969 -8.4150 -10.8988 20 14 0.2059 -7.4223 -11.8881 21 1 -0.9248 -6.6743 -11.2820 22 1 0.8045 -6.6153 -12.9814 23 1 -0.2908 -8.7094 -12.4377 24 6 1.6212 -6.7008 -1.0314 25 6 1.0407 -6.0697 0.0505 26 7 1.2790 -4.7956 0.2982 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5741 -0.8524 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0828 1.3432 -0.0709 31 1 1.5898 1.9164 -0.8524 32 1 1.7044 1.8723 0.9234 33 1 1.5612 -0.3874 2.0628 34 1 3.0798 -0.6612 1.1755 35 1 0.5532 -2.3389 0.8432 36 1 1.9439 -2.7965 1.8555 37 1 3.3554 -4.0589 -2.2000 38 1 3.2742 -7.6944 -2.8464 39 1 4.0765 -6.1587 -3.2537 40 1 1.4008 -6.0300 -4.1487 41 1 0.7791 -7.3331 -6.4262 42 1 1.5834 -5.7963 -6.8256 43 1 2.7335 -8.7230 -11.8084 44 1 1.4202 -7.7437 -1.2273 45 1 0.3826 -6.6255 0.7019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124111903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:55 Heat of formation + Delta-G solvation = -57.426370 kcal Electronic energy + Delta-G solvation = -25426.337080 eV Core-core repulsion = 21569.689971 eV Total energy + Delta-G solvation = -3856.647109 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.72484 -40.58950 -39.42455 -37.91864 -36.28436 -34.57591 -33.59244 -32.15842 -30.97419 -30.42669 -28.52757 -27.84097 -27.33104 -25.31589 -24.40480 -23.10343 -21.83728 -21.75186 -19.93908 -19.10542 -18.02196 -17.78103 -17.51468 -17.27523 -16.87521 -16.78879 -16.54340 -16.13340 -16.01932 -15.82907 -15.71731 -15.42616 -14.74356 -14.50602 -14.46804 -14.24922 -14.13263 -13.67481 -13.42049 -13.33285 -13.25987 -13.15010 -12.90918 -12.78650 -12.71181 -12.66943 -12.59238 -12.10499 -11.78481 -11.71183 -11.25480 -11.15054 -10.69517 -10.66445 -10.26380 -10.19791 -9.47762 -9.30918 -8.65342 -8.34050 -6.11667 0.03235 0.20772 1.28657 1.42057 1.48337 1.59138 1.59760 2.02211 2.26650 2.31034 2.82462 2.96483 3.00157 3.30973 3.33322 3.50435 3.83763 3.94598 3.99990 4.06893 4.12818 4.14496 4.22696 4.30963 4.42430 4.45600 4.48278 4.52591 4.59417 4.62454 4.66833 4.71805 4.76664 4.81756 4.89469 5.00865 5.01566 5.30334 5.31444 5.43352 5.44418 6.00710 6.04491 6.21040 6.31826 6.43494 6.83602 7.07555 7.19128 8.75334 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013054 B = 0.001890 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.428123 B =14808.257705 C =16167.969671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.566 5.566 3 C 0.026 3.974 4 C 0.055 3.945 5 C 0.076 3.924 6 O -0.304 6.304 7 C 0.308 3.692 8 C -0.181 4.181 9 C -0.024 4.024 10 C 0.164 3.836 11 N -0.709 5.709 12 C 0.538 3.462 13 O -0.562 6.562 14 C -0.130 4.130 15 S -0.149 6.149 16 C -0.545 4.545 17 H 0.083 0.917 18 C 0.012 3.988 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.257 1.257 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.189 4.189 25 C 0.138 3.862 26 N -0.550 5.550 27 H 0.037 0.963 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.035 0.965 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.141 0.859 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.414 0.586 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.271 0.729 44 H 0.160 0.840 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.695 15.025 29.856 34.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.290 5.290 3 C -0.122 4.122 4 C -0.073 4.073 5 C 0.001 3.999 6 O -0.211 6.211 7 C 0.130 3.870 8 C -0.202 4.202 9 C -0.032 4.032 10 C 0.041 3.959 11 N -0.363 5.363 12 C 0.324 3.676 13 O -0.439 6.439 14 C -0.281 4.281 15 S 0.079 5.921 16 C -0.693 4.693 17 H 0.101 0.899 18 C -0.192 4.192 19 N -0.547 5.547 20 Si 0.821 3.179 21 H -0.181 1.181 22 H -0.200 1.200 23 H -0.199 1.199 24 C -0.209 4.209 25 C -0.017 4.017 26 N -0.275 5.275 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.159 0.841 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.251 0.749 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.178 0.822 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -4.890 14.395 29.753 33.412 hybrid contribution -1.876 0.866 -0.651 2.167 sum -6.766 15.261 29.102 33.550 Atomic orbital electron populations 1.22439 0.86862 1.02096 1.01213 1.61923 1.08658 1.14961 1.43487 1.22391 1.00959 0.87735 1.01105 1.22264 1.01739 0.90693 0.92557 1.22778 0.97154 0.93604 0.86379 1.86323 1.67112 1.20046 1.47634 1.19953 0.91205 0.85037 0.90813 1.21057 1.04897 0.95574 0.98720 1.19943 0.95392 0.92527 0.95311 1.20179 0.93109 1.01268 0.81368 1.45723 1.24204 1.58842 1.07565 1.20020 0.85919 0.77533 0.84123 1.90704 1.25074 1.43080 1.85090 1.23373 1.02686 1.06041 0.96035 1.85555 1.30754 1.74308 1.01525 1.23239 1.06969 1.42713 0.96408 0.89935 1.26127 0.98598 0.94067 1.00434 1.70188 1.27266 1.36682 1.20595 0.84905 0.77678 0.78282 0.77082 1.18084 1.19974 1.19903 1.22202 0.99228 1.02871 0.96597 1.22944 0.95537 0.88310 0.94912 1.67407 1.18533 1.10051 1.31507 0.94450 0.91077 0.92016 0.91159 0.91082 0.94643 0.90676 0.89552 0.91764 0.90750 0.84125 0.89557 0.90689 0.74893 0.87035 0.87320 0.91996 0.82231 0.79142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.33 127.69 1.19 1.46 16 2 N -0.57 -8.34 4.97 -948.87 -4.71 -13.06 16 3 C 0.03 0.29 9.57 127.69 1.22 1.51 16 4 C 0.06 0.68 5.34 86.30 0.46 1.14 16 5 C 0.08 1.17 5.36 71.98 0.39 1.55 16 6 O -0.30 -6.38 10.06 -89.95 -0.91 -7.29 16 7 C 0.31 6.42 7.49 84.79 0.63 7.06 16 8 C -0.18 -3.62 9.75 22.47 0.22 -3.40 16 9 C -0.02 -0.42 5.28 -19.69 -0.10 -0.53 16 10 C 0.16 3.54 5.85 85.63 0.50 4.04 16 11 N -0.71 -17.57 5.55 -466.79 -2.59 -20.16 16 12 C 0.54 19.40 7.85 87.66 0.69 20.09 16 13 O -0.56 -25.43 15.86 -3.04 -0.05 -25.48 16 14 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 15 S -0.15 -8.21 20.57 -56.49 -1.16 -9.38 16 16 C -0.55 -31.11 9.50 67.95 0.65 -30.46 16 17 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 18 C 0.01 0.71 5.49 84.86 0.47 1.18 16 19 N -0.91 -55.92 13.22 21.65 0.29 -55.63 16 20 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 21 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 C -0.19 -2.69 9.81 22.37 0.22 -2.47 16 25 C 0.14 1.93 11.18 84.63 0.95 2.87 16 26 N -0.55 -10.28 9.22 -308.93 -2.85 -13.12 16 27 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.07 0.86 8.12 -2.39 -0.02 0.84 16 29 H 0.06 0.86 6.37 -2.39 -0.02 0.84 16 30 H 0.07 0.77 8.12 -2.39 -0.02 0.75 16 31 H 0.07 0.77 8.12 -2.39 -0.02 0.75 16 32 H 0.04 0.31 8.14 -2.38 -0.02 0.29 16 33 H 0.08 0.63 8.12 -2.38 -0.02 0.61 16 34 H 0.09 1.05 8.06 -2.38 -0.02 1.03 16 35 H 0.06 1.01 6.30 -2.39 -0.02 1.00 16 36 H 0.07 1.03 8.11 -2.38 -0.02 1.01 16 37 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 38 H 0.09 1.86 8.10 -2.39 -0.02 1.84 16 39 H 0.07 1.76 8.10 -2.39 -0.02 1.74 16 40 H 0.41 8.07 8.46 -92.71 -0.78 7.28 16 41 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 42 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 43 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 44 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 45 H 0.19 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -78.07 397.12 -1.83 -79.90 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.21 Total: 19.15 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 7.91 Total: -0.62 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -9.86 Total: -101.97 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.95 Total: -32.76 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.38 kcal Total: -78.07 -1.83 -79.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124111903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.475 kcal (2) G-P(sol) polarization free energy of solvation -78.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds