Wall clock time and date at job start Sat Apr 11 2020 05:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46493 * 119.99971 * 2 1 4 4 C 1.34772 * 119.99773 * 180.02562 * 2 1 3 5 5 O 1.21289 * 120.00134 * 359.97438 * 4 2 1 6 6 C 1.50700 * 120.00154 * 179.97438 * 4 2 1 7 7 C 1.52994 * 109.47375 * 179.97438 * 6 4 2 8 8 N 1.46501 * 109.47332 * 179.97438 * 7 6 4 9 9 C 1.34773 * 120.00110 * 179.97438 * 8 7 6 10 10 O 1.21589 * 120.00361 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99901 * 180.27787 * 9 8 7 12 12 C 1.40138 * 120.00081 * 175.35645 * 11 9 8 13 13 C 1.38688 * 120.07459 * 34.59721 * 12 11 9 14 14 C 1.38200 * 120.02195 * 179.72486 * 13 12 11 15 15 C 1.38549 * 120.17243 * 0.55031 * 14 13 12 16 16 F 1.35101 * 119.92670 * 179.74446 * 15 14 13 17 17 C 1.38350 * 120.14875 * 359.72481 * 15 14 13 18 18 C 1.38734 * 119.97931 * 0.02562 * 17 15 14 19 19 O 1.35777 * 120.08833 * 180.02562 * 18 17 15 20 20 C 1.34803 * 116.99839 * 5.43667 * 19 18 17 21 21 H 1.08003 * 120.00175 * 354.94414 * 20 19 18 22 22 C 1.38635 * 120.00104 * 174.95430 * 20 19 18 23 23 N 1.31578 * 119.99819 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00339 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47036 * 89.99477 * 24 22 20 26 26 H 1.48501 * 109.47280 * 209.99881 * 24 22 20 27 27 H 1.48503 * 109.47169 * 330.00204 * 24 22 20 28 28 H 1.09004 * 109.47281 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46872 * 299.99544 * 1 2 3 30 30 H 1.08998 * 109.47426 * 59.99431 * 1 2 3 31 31 H 1.08997 * 109.47768 * 270.00427 * 3 2 1 32 32 H 1.08999 * 109.47183 * 30.00778 * 3 2 1 33 33 H 1.09004 * 109.46811 * 150.00325 * 3 2 1 34 34 H 1.09001 * 109.46591 * 59.99838 * 6 4 2 35 35 H 1.09002 * 109.47325 * 300.00079 * 6 4 2 36 36 H 1.09007 * 109.47267 * 60.00207 * 7 6 4 37 37 H 1.09001 * 109.47776 * 300.00223 * 7 6 4 38 38 H 0.97005 * 119.99663 * 0.02562 * 8 7 6 39 39 H 0.96998 * 120.00000 * 355.35605 * 11 9 8 40 40 H 1.08002 * 119.98910 * 359.97438 * 13 12 11 41 41 H 1.07996 * 119.91679 * 180.24909 * 14 13 12 42 42 H 1.07999 * 120.00662 * 180.02562 * 17 15 14 43 43 H 0.96996 * 120.00069 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5324 -2.2176 -0.0005 6 6 3.6459 -1.1673 -0.0011 7 6 4.1558 -2.6097 -0.0010 8 7 5.6208 -2.6098 -0.0022 9 6 6.2947 -3.7770 -0.0018 10 8 5.6867 -4.8300 -0.0009 11 7 7.6424 -3.7771 0.0028 12 6 8.3428 -4.9869 0.1015 13 6 7.8367 -6.1333 -0.4926 14 6 8.5311 -7.3246 -0.3994 15 6 9.7279 -7.3804 0.2964 16 9 10.4000 -8.5487 0.3887 17 6 10.2364 -6.2423 0.8966 18 6 9.5471 -5.0420 0.8026 19 8 10.0444 -3.9236 1.3904 20 6 11.2656 -4.0195 1.9533 21 1 11.7671 -4.9751 1.9958 22 6 11.8776 -2.8915 2.4778 23 7 11.2667 -1.7273 2.4257 24 14 13.5694 -3.0245 3.2585 25 1 14.6110 -2.8041 2.2231 26 1 13.7051 -1.9985 4.3235 27 1 13.7371 -4.3765 3.8492 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 2.3792 1.5835 -1.0276 32 1 1.6085 2.0283 0.5139 33 1 3.1500 1.1383 0.5138 34 1 4.0095 -0.6536 0.8889 35 1 4.0089 -0.6533 -0.8911 36 1 3.7922 -3.1238 -0.8908 37 1 3.7928 -3.1235 0.8892 38 1 6.1059 -1.7697 -0.0025 39 1 8.1277 -2.9397 -0.0622 40 1 6.9016 -6.0943 -1.0316 41 1 8.1375 -8.2154 -0.8661 42 1 11.1697 -6.2884 1.4381 43 1 11.6950 -0.9381 2.7924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135264924.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:58 Heat of formation + Delta-G solvation = -100.205844 kcal Electronic energy + Delta-G solvation = -28438.993248 eV Core-core repulsion = 24014.277906 eV Total energy + Delta-G solvation = -4424.715342 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.21557 -40.39228 -40.02110 -38.73679 -36.48644 -35.92520 -35.07185 -33.99764 -32.40074 -31.35060 -29.37513 -28.58652 -27.91662 -26.46907 -25.48839 -23.63831 -22.29075 -21.57376 -20.59310 -19.55196 -18.33367 -18.22475 -17.62001 -17.41323 -16.63148 -16.56588 -16.22839 -15.56963 -15.22743 -15.11211 -14.95149 -14.83550 -14.36386 -14.27439 -13.92270 -13.62410 -13.58805 -13.41351 -13.19766 -13.13176 -13.00158 -12.92373 -12.52197 -12.34980 -12.12358 -11.90329 -11.71888 -11.62785 -11.32918 -10.94045 -10.70782 -10.54822 -10.19909 -9.84593 -9.74445 -9.42090 -9.11629 -8.96597 -8.94977 -7.84179 -7.07446 -6.60398 -4.17809 1.88757 2.15916 2.28804 2.49640 3.00128 3.06275 3.07968 3.12079 3.50478 3.85367 4.16079 4.38467 4.52764 4.57072 4.64727 4.76964 4.88629 4.88814 4.96682 4.99767 5.11029 5.14971 5.17538 5.26446 5.47144 5.61978 5.76835 5.77365 5.88906 6.02937 6.07006 6.24164 6.51256 6.64094 6.72256 6.89702 6.94040 6.97055 7.10229 7.17124 7.32355 7.69774 7.80547 7.84501 8.28838 8.85408 8.89245 9.48280 10.56855 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011073 B = 0.002564 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.026376 B =10915.763924 C =13276.127552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.625 5.625 3 C 0.076 3.924 4 C 0.519 3.481 5 O -0.532 6.532 6 C -0.153 4.153 7 C 0.156 3.844 8 N -0.749 5.749 9 C 0.705 3.295 10 O -0.582 6.582 11 N -0.664 5.664 12 C 0.078 3.922 13 C -0.050 4.050 14 C -0.227 4.227 15 C 0.127 3.873 16 F -0.152 7.152 17 C -0.258 4.258 18 C 0.157 3.843 19 O -0.169 6.169 20 C -0.391 4.391 21 H 0.094 0.906 22 C 0.043 3.957 23 N -0.862 5.862 24 Si 0.942 3.058 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.266 1.266 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.397 0.603 39 H 0.411 0.589 40 H 0.143 0.857 41 H 0.123 0.877 42 H 0.143 0.857 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.708 8.675 -5.575 17.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.360 5.360 3 C -0.067 4.067 4 C 0.307 3.693 5 O -0.408 6.408 6 C -0.193 4.193 7 C 0.031 3.969 8 N -0.405 5.405 9 C 0.405 3.595 10 O -0.459 6.459 11 N -0.311 5.311 12 C -0.017 4.017 13 C -0.071 4.071 14 C -0.248 4.248 15 C 0.107 3.893 16 F -0.131 7.131 17 C -0.279 4.279 18 C 0.101 3.899 19 O -0.072 6.072 20 C -0.467 4.467 21 H 0.111 0.889 22 C -0.162 4.162 23 N -0.496 5.496 24 Si 0.766 3.234 25 H -0.198 1.198 26 H -0.202 1.202 27 H -0.191 1.191 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.231 0.769 39 H 0.246 0.754 40 H 0.161 0.839 41 H 0.141 0.859 42 H 0.160 0.840 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.657 7.634 -5.439 17.398 hybrid contribution 1.506 0.806 0.515 1.784 sum -13.152 8.440 -4.924 16.384 Atomic orbital electron populations 1.21693 0.79094 1.04382 1.01212 1.47732 1.07289 1.06476 1.74548 1.21847 0.97521 0.85158 1.02213 1.20473 0.89921 0.83264 0.75658 1.90751 1.70264 1.30808 1.49012 1.21857 0.92466 0.99743 1.05251 1.20797 0.78064 0.94082 1.03949 1.44997 1.06808 1.07441 1.81288 1.15828 0.81608 0.84069 0.77963 1.90894 1.67777 1.29853 1.57419 1.42168 1.04092 1.09016 1.75852 1.16648 0.93623 0.86672 1.04742 1.20694 0.99192 0.90184 0.97009 1.20499 0.96570 0.99208 1.08480 1.17462 0.91617 0.80764 0.99408 1.91409 1.80091 1.46759 1.94807 1.20840 1.04959 0.91566 1.10529 1.18819 0.92473 0.87555 0.91047 1.83930 1.33098 1.28606 1.61564 1.21353 0.91562 0.96640 1.37181 0.88857 1.25263 0.99756 0.94119 0.97048 1.70008 1.37881 0.99066 1.42647 0.85688 0.80170 0.78739 0.78786 1.19763 1.20212 1.19070 0.89385 0.92205 0.92259 0.92258 0.90837 0.90499 0.87858 0.87995 0.90758 0.90712 0.76895 0.75358 0.83899 0.85938 0.83986 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 10.69 59.85 0.64 1.16 16 2 N -0.63 -4.74 3.27 -189.51 -0.62 -5.36 16 3 C 0.08 0.31 10.28 59.84 0.62 0.92 16 4 C 0.52 5.36 7.67 -10.99 -0.08 5.27 16 5 O -0.53 -7.75 15.31 5.55 0.08 -7.66 16 6 C -0.15 -1.24 4.37 -27.89 -0.12 -1.36 16 7 C 0.16 1.91 4.96 -4.04 -0.02 1.89 16 8 N -0.75 -9.73 5.56 -65.22 -0.36 -10.09 16 9 C 0.70 12.48 8.41 -86.92 -0.73 11.75 16 10 O -0.58 -12.17 13.76 5.29 0.07 -12.09 16 11 N -0.66 -12.26 5.20 -14.07 -0.07 -12.33 16 12 C 0.08 1.64 6.33 -83.44 -0.53 1.11 16 13 C -0.05 -0.99 8.70 -39.43 -0.34 -1.34 16 14 C -0.23 -4.33 10.02 -39.48 -0.40 -4.72 16 15 C 0.13 2.59 7.29 -39.43 -0.29 2.30 16 16 F -0.15 -2.95 17.26 2.25 0.04 -2.91 16 17 C -0.26 -5.68 9.14 -39.36 -0.36 -6.04 16 18 C 0.16 3.64 6.66 -38.94 -0.26 3.38 16 19 O -0.17 -4.39 9.32 0.04 0.00 -4.39 16 20 C -0.39 -10.26 9.49 30.88 0.29 -9.97 16 21 H 0.09 2.31 5.20 -52.48 -0.27 2.04 16 22 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 23 N -0.86 -23.15 13.67 55.48 0.76 -22.39 16 24 Si 0.94 19.56 29.55 -169.99 -5.02 14.54 16 25 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 26 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 27 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 28 H 0.09 0.75 6.90 -51.93 -0.36 0.40 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.21 8.07 -51.93 -0.42 -0.21 16 33 H 0.08 0.25 6.44 -51.93 -0.33 -0.09 16 34 H 0.10 0.66 7.40 -51.93 -0.38 0.27 16 35 H 0.10 0.59 8.11 -51.93 -0.42 0.17 16 36 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 37 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 38 H 0.40 3.99 8.49 -40.82 -0.35 3.64 16 39 H 0.41 7.05 8.59 -40.82 -0.35 6.70 16 40 H 0.14 2.78 6.19 -52.49 -0.32 2.45 16 41 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 42 H 0.14 3.11 5.64 -52.49 -0.30 2.82 16 43 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 371.76 15.07 5.60 5.60 Total: -1.00 -33.79 371.76 -6.38 -40.17 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -5.18 Total: 11.57 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -1.68 Total: 5.35 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.30 Total: -50.18 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: 0.16 Total: -24.14 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.79 -6.38 -40.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135264924.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.037 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds