Wall clock time and date at job start Sat Apr 11 2020 05:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46493 * 119.99971 * 2 1 4 4 C 1.34772 * 119.99773 * 180.02562 * 2 1 3 5 5 O 1.21289 * 120.00134 * 359.97438 * 4 2 1 6 6 C 1.50700 * 120.00154 * 179.97438 * 4 2 1 7 7 C 1.52994 * 109.47375 * 179.97438 * 6 4 2 8 8 N 1.46501 * 109.47332 * 179.97438 * 7 6 4 9 9 C 1.34773 * 120.00110 * 179.97438 * 8 7 6 10 10 O 1.21589 * 120.00361 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99901 * 180.27787 * 9 8 7 12 12 C 1.40138 * 120.00081 * 175.35645 * 11 9 8 13 13 C 1.38688 * 120.07459 * 34.59721 * 12 11 9 14 14 C 1.38200 * 120.02195 * 179.72486 * 13 12 11 15 15 C 1.38549 * 120.17243 * 0.55031 * 14 13 12 16 16 F 1.35101 * 119.92670 * 179.74446 * 15 14 13 17 17 C 1.38350 * 120.14875 * 359.72481 * 15 14 13 18 18 C 1.38734 * 119.97931 * 0.02562 * 17 15 14 19 19 O 1.35777 * 120.08833 * 180.02562 * 18 17 15 20 20 C 1.34803 * 116.99839 * 5.43667 * 19 18 17 21 21 H 1.08003 * 120.00175 * 354.94414 * 20 19 18 22 22 C 1.38635 * 120.00104 * 174.95430 * 20 19 18 23 23 N 1.31578 * 119.99819 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00339 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47036 * 89.99477 * 24 22 20 26 26 H 1.48501 * 109.47280 * 209.99881 * 24 22 20 27 27 H 1.48503 * 109.47169 * 330.00204 * 24 22 20 28 28 H 1.09004 * 109.47281 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46872 * 299.99544 * 1 2 3 30 30 H 1.08998 * 109.47426 * 59.99431 * 1 2 3 31 31 H 1.08997 * 109.47768 * 270.00427 * 3 2 1 32 32 H 1.08999 * 109.47183 * 30.00778 * 3 2 1 33 33 H 1.09004 * 109.46811 * 150.00325 * 3 2 1 34 34 H 1.09001 * 109.46591 * 59.99838 * 6 4 2 35 35 H 1.09002 * 109.47325 * 300.00079 * 6 4 2 36 36 H 1.09007 * 109.47267 * 60.00207 * 7 6 4 37 37 H 1.09001 * 109.47776 * 300.00223 * 7 6 4 38 38 H 0.97005 * 119.99663 * 0.02562 * 8 7 6 39 39 H 0.96998 * 120.00000 * 355.35605 * 11 9 8 40 40 H 1.08002 * 119.98910 * 359.97438 * 13 12 11 41 41 H 1.07996 * 119.91679 * 180.24909 * 14 13 12 42 42 H 1.07999 * 120.00662 * 180.02562 * 17 15 14 43 43 H 0.96996 * 120.00069 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5324 -2.2176 -0.0005 6 6 3.6459 -1.1673 -0.0011 7 6 4.1558 -2.6097 -0.0010 8 7 5.6208 -2.6098 -0.0022 9 6 6.2947 -3.7770 -0.0018 10 8 5.6867 -4.8300 -0.0009 11 7 7.6424 -3.7771 0.0028 12 6 8.3428 -4.9869 0.1015 13 6 7.8367 -6.1333 -0.4926 14 6 8.5311 -7.3246 -0.3994 15 6 9.7279 -7.3804 0.2964 16 9 10.4000 -8.5487 0.3887 17 6 10.2364 -6.2423 0.8966 18 6 9.5471 -5.0420 0.8026 19 8 10.0444 -3.9236 1.3904 20 6 11.2656 -4.0195 1.9533 21 1 11.7671 -4.9751 1.9958 22 6 11.8776 -2.8915 2.4778 23 7 11.2667 -1.7273 2.4257 24 14 13.5694 -3.0245 3.2585 25 1 14.6110 -2.8041 2.2231 26 1 13.7051 -1.9985 4.3235 27 1 13.7371 -4.3765 3.8492 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 2.3792 1.5835 -1.0276 32 1 1.6085 2.0283 0.5139 33 1 3.1500 1.1383 0.5138 34 1 4.0095 -0.6536 0.8889 35 1 4.0089 -0.6533 -0.8911 36 1 3.7922 -3.1238 -0.8908 37 1 3.7928 -3.1235 0.8892 38 1 6.1059 -1.7697 -0.0025 39 1 8.1277 -2.9397 -0.0622 40 1 6.9016 -6.0943 -1.0316 41 1 8.1375 -8.2154 -0.8661 42 1 11.1697 -6.2884 1.4381 43 1 11.6950 -0.9381 2.7924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135264924.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:57 Heat of formation + Delta-G solvation = -124.452587 kcal Electronic energy + Delta-G solvation = -28440.044666 eV Core-core repulsion = 24014.277906 eV Total energy + Delta-G solvation = -4425.766760 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.81551 -41.75574 -40.97917 -40.33857 -38.14195 -36.64936 -36.25695 -35.55317 -34.28542 -32.33481 -31.04198 -29.82571 -28.73850 -27.39487 -27.11190 -24.71232 -23.83465 -23.11322 -22.00264 -20.39274 -20.11487 -19.65091 -19.14107 -18.44371 -17.94541 -17.37019 -17.10310 -16.94893 -16.87145 -16.57179 -16.36343 -16.05490 -15.94667 -15.54871 -15.28121 -15.17958 -15.13671 -14.83951 -14.25373 -14.09900 -13.95474 -13.73389 -13.41998 -13.41322 -13.31083 -13.15038 -13.02181 -12.65783 -12.59687 -12.45769 -12.33185 -12.14261 -11.64320 -11.38352 -11.05823 -10.94707 -10.80253 -10.20146 -9.69615 -9.53070 -8.73415 -8.49111 -6.14699 0.22583 0.48032 1.39152 1.45542 1.47921 1.53671 1.53882 2.03224 2.12549 2.16701 2.69836 3.07367 3.14751 3.19922 3.46877 3.59132 3.78752 3.96429 4.04046 4.17926 4.29894 4.38533 4.45399 4.51646 4.54585 4.60524 4.75258 4.87030 4.88205 4.93894 4.96653 4.99968 5.04687 5.23786 5.30456 5.34523 5.41843 5.48638 5.57980 5.92443 5.96260 6.09221 6.28875 6.95535 6.97011 7.09151 7.46692 7.64819 8.71230 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011073 B = 0.002564 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.026376 B =10915.763924 C =13276.127552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.622 5.622 3 C 0.067 3.933 4 C 0.510 3.490 5 O -0.588 6.588 6 C -0.139 4.139 7 C 0.159 3.841 8 N -0.726 5.726 9 C 0.701 3.299 10 O -0.615 6.615 11 N -0.663 5.663 12 C 0.079 3.921 13 C -0.052 4.052 14 C -0.205 4.205 15 C 0.122 3.878 16 F -0.145 7.145 17 C -0.264 4.264 18 C 0.132 3.868 19 O -0.199 6.199 20 C -0.417 4.417 21 H 0.098 0.902 22 C -0.007 4.007 23 N -0.903 5.903 24 Si 1.010 2.990 25 H -0.263 1.263 26 H -0.270 1.270 27 H -0.261 1.261 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.057 0.943 37 H 0.048 0.952 38 H 0.415 0.585 39 H 0.416 0.584 40 H 0.151 0.849 41 H 0.156 0.844 42 H 0.137 0.863 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.569 9.725 -6.036 17.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.355 5.355 3 C -0.074 4.074 4 C 0.299 3.701 5 O -0.469 6.469 6 C -0.178 4.178 7 C 0.034 3.966 8 N -0.383 5.383 9 C 0.402 3.598 10 O -0.496 6.496 11 N -0.310 5.310 12 C -0.017 4.017 13 C -0.073 4.073 14 C -0.225 4.225 15 C 0.102 3.898 16 F -0.123 7.123 17 C -0.284 4.284 18 C 0.078 3.922 19 O -0.105 6.105 20 C -0.493 4.493 21 H 0.115 0.885 22 C -0.207 4.207 23 N -0.539 5.539 24 Si 0.830 3.170 25 H -0.188 1.188 26 H -0.195 1.195 27 H -0.185 1.185 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.147 0.853 35 H 0.152 0.848 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.252 0.748 39 H 0.252 0.748 40 H 0.168 0.832 41 H 0.174 0.826 42 H 0.155 0.845 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.542 8.754 -5.922 17.977 hybrid contribution 1.270 0.405 0.543 1.440 sum -13.271 9.159 -5.379 16.998 Atomic orbital electron populations 1.21789 0.78768 1.03220 1.03027 1.47895 1.07847 1.06953 1.72783 1.22141 0.98006 0.83670 1.03612 1.20842 0.90733 0.83300 0.75204 1.90732 1.71349 1.32882 1.51951 1.21783 0.91011 0.97051 1.07984 1.20743 0.77079 0.96850 1.01899 1.44819 1.07126 1.06843 1.79475 1.15997 0.81216 0.84846 0.77745 1.90863 1.68252 1.31480 1.58974 1.42144 1.04429 1.08571 1.75871 1.16881 0.93064 0.87990 1.03770 1.20864 0.99422 0.90089 0.96932 1.20869 0.95248 1.00001 1.06335 1.17449 0.92142 0.80538 0.99665 1.91426 1.80031 1.46119 1.94772 1.20921 1.04866 0.92039 1.10605 1.19134 0.93531 0.87509 0.91985 1.83906 1.33461 1.29798 1.63292 1.21739 0.92178 0.97298 1.38039 0.88470 1.26326 1.03466 0.93582 0.97283 1.70105 1.39747 0.99829 1.44244 0.84699 0.75328 0.78957 0.78033 1.18823 1.19496 1.18464 0.92039 0.90422 0.90352 0.90842 0.89196 0.89264 0.85342 0.84784 0.92428 0.93360 0.74784 0.74752 0.83171 0.82626 0.84531 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.90 10.69 127.77 1.37 2.26 16 2 N -0.62 -8.33 3.27 -871.88 -2.85 -11.19 16 3 C 0.07 0.33 10.28 127.77 1.31 1.64 16 4 C 0.51 10.17 7.67 87.66 0.67 10.85 16 5 O -0.59 -17.81 15.31 -3.06 -0.05 -17.86 16 6 C -0.14 -1.97 4.37 29.85 0.13 -1.84 16 7 C 0.16 3.85 4.96 86.38 0.43 4.28 16 8 N -0.73 -18.19 5.56 -478.53 -2.66 -20.85 16 9 C 0.70 24.68 8.41 179.05 1.51 26.18 16 10 O -0.62 -25.82 13.76 -4.00 -0.05 -25.87 16 11 N -0.66 -24.45 5.20 -316.70 -1.65 -26.10 16 12 C 0.08 3.31 6.33 38.22 0.24 3.55 16 13 C -0.05 -2.02 8.70 22.37 0.19 -1.82 16 14 C -0.20 -7.35 10.02 22.33 0.22 -7.13 16 15 C 0.12 4.80 7.29 22.37 0.16 4.96 16 16 F -0.14 -5.37 17.26 44.97 0.78 -4.59 16 17 C -0.26 -11.65 9.14 22.42 0.20 -11.44 16 18 C 0.13 6.22 6.66 22.68 0.15 6.37 16 19 O -0.20 -10.65 9.32 -22.76 -0.21 -10.86 16 20 C -0.42 -22.35 9.49 67.91 0.64 -21.71 16 21 H 0.10 4.93 5.20 -2.91 -0.02 4.91 16 22 C -0.01 -0.35 5.49 84.83 0.47 0.12 16 23 N -0.90 -49.33 13.67 21.61 0.30 -49.03 16 24 Si 1.01 40.05 29.55 68.60 2.03 42.08 16 25 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 26 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 27 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 28 H 0.06 1.10 6.90 -2.38 -0.02 1.08 16 29 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.09 0.19 8.07 -2.39 -0.02 0.17 16 33 H 0.09 0.24 6.44 -2.38 -0.02 0.22 16 34 H 0.13 1.23 7.40 -2.39 -0.02 1.21 16 35 H 0.13 1.09 8.11 -2.39 -0.02 1.07 16 36 H 0.06 1.61 8.10 -2.38 -0.02 1.59 16 37 H 0.05 1.44 8.10 -2.39 -0.02 1.42 16 38 H 0.42 7.55 8.49 -92.70 -0.79 6.76 16 39 H 0.42 14.35 8.59 -92.71 -0.80 13.56 16 40 H 0.15 5.65 6.19 -2.91 -0.02 5.63 16 41 H 0.16 4.57 8.06 -2.91 -0.02 4.55 16 42 H 0.14 6.10 5.64 -2.91 -0.02 6.08 16 43 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -76.24 371.76 2.84 -73.40 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: -0.49 Total: 34.61 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 7.71 Total: 16.27 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -6.87 Total: -107.17 kcal Atomic # 8 Polarization: -54.28 SS G_CDS: -0.31 Total: -54.59 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.78 Total: -4.59 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Total: -76.24 2.84 -73.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135264924.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.057 kcal (2) G-P(sol) polarization free energy of solvation -76.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds