Wall clock time and date at job start Sat Apr 11 2020 05:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21280 * 119.99912 * 2 1 4 4 N 1.34774 * 120.00208 * 180.02562 * 2 1 3 5 5 C 1.46497 * 120.00169 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47043 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47006 * 179.97438 * 6 5 4 8 8 N 1.46512 * 109.46872 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99788 * 180.02562 * 8 7 6 10 10 O 1.21600 * 120.00058 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00035 * 180.27641 * 9 8 7 12 12 C 1.40138 * 120.00166 * 174.05264 * 11 9 8 13 13 C 1.38694 * 120.07209 * 335.23100 * 12 11 9 14 14 C 1.38203 * 120.01409 * 179.71932 * 13 12 11 15 15 C 1.38538 * 120.17789 * 0.55532 * 14 13 12 16 16 F 1.35105 * 119.92759 * 179.74374 * 15 14 13 17 17 C 1.38343 * 120.15214 * 359.72250 * 15 14 13 18 18 C 1.38741 * 119.97488 * 359.97438 * 17 15 14 19 19 O 1.35783 * 120.08715 * 180.02562 * 18 17 15 20 20 C 1.34808 * 116.99771 * 5.20572 * 19 18 17 21 21 H 1.08003 * 120.00234 * 354.97460 * 20 19 18 22 22 C 1.38635 * 120.00004 * 174.97560 * 20 19 18 23 23 N 1.31568 * 120.00275 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99860 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47493 * 89.99974 * 24 22 20 26 26 H 1.48500 * 109.46898 * 209.99949 * 24 22 20 27 27 H 1.48505 * 109.47169 * 329.99710 * 24 22 20 28 28 H 1.09003 * 109.47010 * 239.99827 * 1 2 3 29 29 H 1.09004 * 109.47221 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.46750 * 119.99744 * 1 2 3 31 31 H 0.97003 * 119.99645 * 359.97438 * 4 2 1 32 32 H 1.09000 * 109.47800 * 59.99611 * 5 4 2 33 33 H 1.09003 * 109.47121 * 299.99231 * 5 4 2 34 34 H 1.09001 * 109.47520 * 59.99504 * 6 5 4 35 35 H 1.09003 * 109.47105 * 299.99416 * 6 5 4 36 36 H 1.08995 * 109.47307 * 60.00253 * 7 6 5 37 37 H 1.08997 * 109.47129 * 299.99125 * 7 6 5 38 38 H 0.96998 * 120.00122 * 0.02562 * 8 7 6 39 39 H 0.97002 * 119.99705 * 354.05574 * 11 9 8 40 40 H 1.07999 * 119.99259 * 359.97438 * 13 12 11 41 41 H 1.08002 * 119.90963 * 180.25088 * 14 13 12 42 42 H 1.08002 * 120.01361 * 180.02562 * 17 15 14 43 43 H 0.96998 * 120.00116 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1671 0.0000 6 6 4.1559 -2.6096 -0.0001 7 6 5.6859 -2.6096 -0.0001 8 7 6.1742 -3.9910 0.0004 9 6 7.4993 -4.2372 0.0009 10 8 8.2895 -3.3130 0.0006 11 7 7.9485 -5.5078 -0.0042 12 6 9.3203 -5.7655 -0.1294 13 6 10.1486 -4.8377 -0.7432 14 6 11.5022 -5.0905 -0.8608 15 6 12.0341 -6.2748 -0.3772 16 9 13.3573 -6.5190 -0.4995 17 6 11.2135 -7.2078 0.2311 18 6 9.8548 -6.9578 0.3582 19 8 9.0474 -7.8717 0.9553 20 6 9.6431 -8.9519 1.4991 21 1 10.7058 -9.1010 1.3775 22 6 8.8916 -9.8713 2.2146 23 7 9.4728 -10.9257 2.7449 24 14 7.0533 -9.6137 2.4244 25 1 6.3307 -10.2679 1.3042 26 1 6.6139 -10.2092 3.7118 27 1 6.7541 -8.1591 2.4241 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3634 1.0277 0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 1.6959 -2.0072 -0.0005 32 1 4.0090 -0.6539 0.8904 33 1 4.0096 -0.6528 -0.8895 34 1 3.7928 -3.1234 -0.8903 35 1 3.7923 -3.1237 0.8897 36 1 6.0493 -2.0959 0.8898 37 1 6.0492 -2.0959 -0.8901 38 1 5.5439 -4.7282 0.0003 39 1 7.3223 -6.2440 0.0786 40 1 9.7364 -3.9156 -1.1255 41 1 12.1463 -4.3650 -1.3354 42 1 11.6306 -8.1301 0.6077 43 1 8.9470 -11.5688 3.2458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135310640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:00 Heat of formation + Delta-G solvation = -112.922932 kcal Electronic energy + Delta-G solvation = -28002.876538 eV Core-core repulsion = 23577.609741 eV Total energy + Delta-G solvation = -4425.266796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.27135 -40.49137 -39.97128 -39.00986 -36.91336 -36.26468 -34.69065 -34.25331 -32.52760 -31.98438 -30.00395 -29.56005 -28.34733 -25.59927 -25.33125 -22.72377 -22.17527 -21.66123 -20.95462 -20.67849 -18.49640 -18.26456 -17.83948 -17.14521 -17.07595 -16.51672 -16.49092 -15.76707 -15.47550 -15.26231 -15.09106 -15.03209 -14.71855 -14.25250 -14.14618 -13.90438 -13.79410 -13.52613 -13.36482 -13.21188 -13.14314 -12.56909 -12.47831 -12.41629 -12.32132 -12.06693 -11.89040 -11.63891 -11.44308 -11.02033 -10.83553 -10.50665 -10.34022 -10.03963 -9.81095 -9.58964 -9.55697 -9.19455 -9.03006 -7.97365 -7.19896 -6.56129 -4.23391 1.75089 2.00868 2.21743 2.52301 2.88211 3.06813 3.09575 3.18484 3.25817 4.05602 4.15081 4.26112 4.33074 4.47555 4.50041 4.51774 4.60513 4.80498 4.87598 4.93084 4.99199 5.08318 5.19599 5.31432 5.42644 5.48525 5.65068 5.66934 5.69176 5.88767 5.93302 6.03845 6.28798 6.43769 6.59155 6.80417 6.87287 6.95849 7.01435 7.07634 7.44747 7.63612 7.77651 7.85664 8.03539 8.62766 8.76760 9.31584 10.51208 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011157 B = 0.002363 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.009473 B =11847.495914 C =14243.755652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.508 3.492 3 O -0.545 6.545 4 N -0.733 5.733 5 C 0.121 3.879 6 C -0.144 4.144 7 C 0.143 3.857 8 N -0.748 5.748 9 C 0.703 3.297 10 O -0.578 6.578 11 N -0.666 5.666 12 C 0.084 3.916 13 C -0.063 4.063 14 C -0.216 4.216 15 C 0.124 3.876 16 F -0.149 7.149 17 C -0.242 4.242 18 C 0.160 3.840 19 O -0.212 6.212 20 C -0.390 4.390 21 H 0.109 0.891 22 C 0.065 3.935 23 N -0.872 5.872 24 Si 0.906 3.094 25 H -0.272 1.272 26 H -0.281 1.281 27 H -0.261 1.261 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.402 0.598 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.397 0.603 39 H 0.409 0.591 40 H 0.151 0.849 41 H 0.125 0.875 42 H 0.149 0.851 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.724 13.431 -6.389 22.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.295 3.705 3 O -0.422 6.422 4 N -0.386 5.386 5 C -0.004 4.004 6 C -0.183 4.183 7 C 0.018 3.982 8 N -0.404 5.404 9 C 0.404 3.596 10 O -0.456 6.456 11 N -0.312 5.312 12 C -0.011 4.011 13 C -0.084 4.084 14 C -0.236 4.236 15 C 0.104 3.896 16 F -0.128 7.128 17 C -0.263 4.263 18 C 0.106 3.894 19 O -0.117 6.117 20 C -0.465 4.465 21 H 0.126 0.874 22 C -0.139 4.139 23 N -0.509 5.509 24 Si 0.732 3.268 25 H -0.198 1.198 26 H -0.207 1.207 27 H -0.185 1.185 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.236 0.764 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.231 0.769 39 H 0.244 0.756 40 H 0.168 0.832 41 H 0.143 0.857 42 H 0.167 0.833 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.838 14.830 -6.223 22.572 hybrid contribution -1.214 -1.500 0.345 1.960 sum -17.051 13.330 -5.878 22.428 Atomic orbital electron populations 1.21924 0.91509 1.05678 1.04310 1.20848 0.90710 0.83397 0.75512 1.90751 1.70919 1.31427 1.49135 1.46041 1.07440 1.08941 1.76154 1.21218 0.79597 0.96324 1.03225 1.21986 0.95735 0.96808 1.03725 1.20998 0.91791 0.82252 1.03122 1.45026 1.05466 1.08801 1.81114 1.15832 0.82434 0.83242 0.78077 1.90879 1.54172 1.43304 1.57229 1.42236 1.06922 1.06625 1.75457 1.16696 0.82675 0.94800 1.06954 1.20811 0.91913 0.99064 0.96592 1.20569 0.95804 0.97694 1.09574 1.17466 0.77031 0.95044 1.00067 1.91427 1.32452 1.94708 1.94209 1.20956 0.93116 1.02707 1.09534 1.18386 0.88935 0.88632 0.93460 1.83481 1.34377 1.29861 1.63996 1.20751 0.96250 0.97184 1.32325 0.87376 1.24472 1.00239 0.94404 0.94831 1.69641 1.37158 1.11009 1.33136 0.86181 0.83270 0.79414 0.77950 1.19772 1.20671 1.18538 0.89329 0.88904 0.89338 0.76389 0.90884 0.90884 0.90367 0.90340 0.91074 0.91044 0.76914 0.75606 0.83188 0.85722 0.83324 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.65 10.32 36.01 0.37 -0.28 16 2 C 0.51 3.96 7.94 -10.99 -0.09 3.87 16 3 O -0.55 -7.01 17.09 5.56 0.09 -6.91 16 4 N -0.73 -4.04 5.56 -60.30 -0.33 -4.37 16 5 C 0.12 0.78 5.67 -4.04 -0.02 0.76 16 6 C -0.14 -0.74 5.44 -26.73 -0.15 -0.89 16 7 C 0.14 1.23 5.68 -4.03 -0.02 1.20 16 8 N -0.75 -7.81 5.56 -65.22 -0.36 -8.18 16 9 C 0.70 10.77 8.37 -86.92 -0.73 10.04 16 10 O -0.58 -10.60 13.51 5.28 0.07 -10.53 16 11 N -0.67 -10.93 5.30 -14.07 -0.07 -11.00 16 12 C 0.08 1.61 6.45 -83.44 -0.54 1.08 16 13 C -0.06 -1.16 8.71 -39.43 -0.34 -1.50 16 14 C -0.22 -3.87 10.02 -39.48 -0.40 -4.27 16 15 C 0.12 2.43 7.29 -39.43 -0.29 2.14 16 16 F -0.15 -2.85 17.26 2.25 0.04 -2.81 16 17 C -0.24 -5.20 9.14 -39.36 -0.36 -5.56 16 18 C 0.16 3.48 6.66 -38.94 -0.26 3.22 16 19 O -0.21 -5.02 8.00 0.01 0.00 -5.02 16 20 C -0.39 -10.25 9.94 30.88 0.31 -9.95 16 21 H 0.11 2.97 5.44 -52.48 -0.29 2.68 16 22 C 0.06 1.70 5.49 -17.52 -0.10 1.60 16 23 N -0.87 -23.98 13.96 55.48 0.77 -23.20 16 24 Si 0.91 19.60 28.62 -169.99 -4.86 14.73 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 28 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.09 0.40 8.12 -51.93 -0.42 -0.02 16 30 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.40 1.00 8.47 -40.82 -0.35 0.66 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.40 3.10 8.49 -40.82 -0.35 2.75 16 39 H 0.41 6.07 8.36 -40.82 -0.34 5.73 16 40 H 0.15 2.68 5.78 -52.49 -0.30 2.37 16 41 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 42 H 0.15 3.34 5.63 -52.49 -0.30 3.04 16 43 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 375.12 15.07 5.65 5.65 Total: -1.00 -33.63 375.12 -6.89 -40.53 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -5.28 Total: 9.65 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -2.61 Total: 1.48 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.00 Total: -46.75 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: 0.17 Total: -22.47 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.04 Total: -2.81 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.86 Total: 14.73 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.63 -6.89 -40.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135310640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.398 kcal (2) G-P(sol) polarization free energy of solvation -33.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds