Wall clock time and date at job start Sat Apr 11 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21280 * 119.99912 * 2 1 4 4 N 1.34774 * 120.00208 * 180.02562 * 2 1 3 5 5 C 1.46497 * 120.00169 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47043 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47006 * 179.97438 * 6 5 4 8 8 N 1.46512 * 109.46872 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99788 * 180.02562 * 8 7 6 10 10 O 1.21600 * 120.00058 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00035 * 180.27641 * 9 8 7 12 12 C 1.40138 * 120.00166 * 174.05264 * 11 9 8 13 13 C 1.38694 * 120.07209 * 335.23100 * 12 11 9 14 14 C 1.38203 * 120.01409 * 179.71932 * 13 12 11 15 15 C 1.38538 * 120.17789 * 0.55532 * 14 13 12 16 16 F 1.35105 * 119.92759 * 179.74374 * 15 14 13 17 17 C 1.38343 * 120.15214 * 359.72250 * 15 14 13 18 18 C 1.38741 * 119.97488 * 359.97438 * 17 15 14 19 19 O 1.35783 * 120.08715 * 180.02562 * 18 17 15 20 20 C 1.34808 * 116.99771 * 5.20572 * 19 18 17 21 21 H 1.08003 * 120.00234 * 354.97460 * 20 19 18 22 22 C 1.38635 * 120.00004 * 174.97560 * 20 19 18 23 23 N 1.31568 * 120.00275 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99860 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47493 * 89.99974 * 24 22 20 26 26 H 1.48500 * 109.46898 * 209.99949 * 24 22 20 27 27 H 1.48505 * 109.47169 * 329.99710 * 24 22 20 28 28 H 1.09003 * 109.47010 * 239.99827 * 1 2 3 29 29 H 1.09004 * 109.47221 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.46750 * 119.99744 * 1 2 3 31 31 H 0.97003 * 119.99645 * 359.97438 * 4 2 1 32 32 H 1.09000 * 109.47800 * 59.99611 * 5 4 2 33 33 H 1.09003 * 109.47121 * 299.99231 * 5 4 2 34 34 H 1.09001 * 109.47520 * 59.99504 * 6 5 4 35 35 H 1.09003 * 109.47105 * 299.99416 * 6 5 4 36 36 H 1.08995 * 109.47307 * 60.00253 * 7 6 5 37 37 H 1.08997 * 109.47129 * 299.99125 * 7 6 5 38 38 H 0.96998 * 120.00122 * 0.02562 * 8 7 6 39 39 H 0.97002 * 119.99705 * 354.05574 * 11 9 8 40 40 H 1.07999 * 119.99259 * 359.97438 * 13 12 11 41 41 H 1.08002 * 119.90963 * 180.25088 * 14 13 12 42 42 H 1.08002 * 120.01361 * 180.02562 * 17 15 14 43 43 H 0.96998 * 120.00116 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1671 0.0000 6 6 4.1559 -2.6096 -0.0001 7 6 5.6859 -2.6096 -0.0001 8 7 6.1742 -3.9910 0.0004 9 6 7.4993 -4.2372 0.0009 10 8 8.2895 -3.3130 0.0006 11 7 7.9485 -5.5078 -0.0042 12 6 9.3203 -5.7655 -0.1294 13 6 10.1486 -4.8377 -0.7432 14 6 11.5022 -5.0905 -0.8608 15 6 12.0341 -6.2748 -0.3772 16 9 13.3573 -6.5190 -0.4995 17 6 11.2135 -7.2078 0.2311 18 6 9.8548 -6.9578 0.3582 19 8 9.0474 -7.8717 0.9553 20 6 9.6431 -8.9519 1.4991 21 1 10.7058 -9.1010 1.3775 22 6 8.8916 -9.8713 2.2146 23 7 9.4728 -10.9257 2.7449 24 14 7.0533 -9.6137 2.4244 25 1 6.3307 -10.2679 1.3042 26 1 6.6139 -10.2092 3.7118 27 1 6.7541 -8.1591 2.4241 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3634 1.0277 0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 1.6959 -2.0072 -0.0005 32 1 4.0090 -0.6539 0.8904 33 1 4.0096 -0.6528 -0.8895 34 1 3.7928 -3.1234 -0.8903 35 1 3.7923 -3.1237 0.8897 36 1 6.0493 -2.0959 0.8898 37 1 6.0492 -2.0959 -0.8901 38 1 5.5439 -4.7282 0.0003 39 1 7.3223 -6.2440 0.0786 40 1 9.7364 -3.9156 -1.1255 41 1 12.1463 -4.3650 -1.3354 42 1 11.6306 -8.1301 0.6077 43 1 8.9470 -11.5688 3.2458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135310640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:59 Heat of formation + Delta-G solvation = -138.518557 kcal Electronic energy + Delta-G solvation = -28003.986447 eV Core-core repulsion = 23577.609741 eV Total energy + Delta-G solvation = -4426.376706 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.83732 -41.84678 -40.64458 -40.47222 -38.31107 -37.22195 -35.64315 -35.53449 -34.46050 -32.68960 -31.21784 -30.58113 -29.64736 -27.34027 -26.22129 -24.13570 -23.25464 -22.79722 -21.94695 -21.54516 -20.15128 -19.80085 -19.28039 -18.40523 -17.71444 -17.33217 -17.24126 -17.12203 -16.88020 -16.60831 -16.38100 -16.09990 -15.87666 -15.73069 -15.54951 -15.31666 -15.13785 -14.90936 -14.40859 -14.25637 -14.06363 -13.77797 -13.59695 -13.51321 -13.15228 -12.96000 -12.95470 -12.62756 -12.59885 -12.40898 -12.15739 -12.07571 -11.65095 -11.42568 -11.09657 -10.98289 -10.91340 -10.17911 -10.11126 -9.60593 -8.74626 -8.50042 -6.24615 0.17613 0.40389 1.34360 1.40622 1.50168 1.53778 1.65267 1.99575 2.28104 2.30830 2.66072 2.76285 3.03847 3.15369 3.39113 3.85459 3.90396 3.98510 3.99042 4.08030 4.14737 4.28275 4.51320 4.53211 4.55164 4.59811 4.70191 4.77786 4.88354 5.03249 5.09645 5.11258 5.16924 5.18479 5.28434 5.42739 5.45874 5.46758 5.60336 5.82255 5.92810 6.09757 6.58363 6.81189 6.92906 7.28305 7.38608 7.47877 8.60871 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011157 B = 0.002363 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.009473 B =11847.495914 C =14243.755652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.500 3.500 3 O -0.606 6.606 4 N -0.718 5.718 5 C 0.121 3.879 6 C -0.124 4.124 7 C 0.140 3.860 8 N -0.726 5.726 9 C 0.701 3.299 10 O -0.609 6.609 11 N -0.666 5.666 12 C 0.097 3.903 13 C -0.064 4.064 14 C -0.189 4.189 15 C 0.112 3.888 16 F -0.147 7.147 17 C -0.253 4.253 18 C 0.135 3.865 19 O -0.221 6.221 20 C -0.401 4.401 21 H 0.078 0.922 22 C 0.009 3.991 23 N -0.921 5.921 24 Si 0.976 3.024 25 H -0.258 1.258 26 H -0.277 1.277 27 H -0.248 1.248 28 H 0.111 0.889 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.420 0.580 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.414 0.586 39 H 0.417 0.583 40 H 0.164 0.836 41 H 0.159 0.841 42 H 0.127 0.873 43 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.705 14.640 -7.351 25.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.289 3.711 3 O -0.488 6.488 4 N -0.371 5.371 5 C -0.004 4.004 6 C -0.162 4.162 7 C 0.016 3.984 8 N -0.382 5.382 9 C 0.402 3.598 10 O -0.490 6.490 11 N -0.313 5.313 12 C 0.001 3.999 13 C -0.084 4.084 14 C -0.209 4.209 15 C 0.092 3.908 16 F -0.126 7.126 17 C -0.274 4.274 18 C 0.083 3.917 19 O -0.127 6.127 20 C -0.477 4.477 21 H 0.095 0.905 22 C -0.190 4.190 23 N -0.561 5.561 24 Si 0.796 3.204 25 H -0.183 1.183 26 H -0.202 1.202 27 H -0.171 1.171 28 H 0.130 0.870 29 H 0.102 0.898 30 H 0.131 0.869 31 H 0.258 0.742 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.251 0.749 39 H 0.254 0.746 40 H 0.181 0.819 41 H 0.177 0.823 42 H 0.144 0.856 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.874 16.020 -7.211 25.785 hybrid contribution -0.158 -1.683 0.525 1.770 sum -19.032 14.336 -6.687 24.748 Atomic orbital electron populations 1.21927 0.88163 1.05909 1.06541 1.21641 0.92396 0.82873 0.74207 1.90726 1.72353 1.33590 1.52135 1.45934 1.07040 1.09383 1.74771 1.21112 0.80353 0.97024 1.01940 1.21813 0.92885 0.95984 1.05555 1.21122 0.94110 0.80854 1.02343 1.44907 1.03916 1.10266 1.79138 1.15982 0.83730 0.82260 0.77827 1.90853 1.55489 1.43964 1.58649 1.42231 1.05886 1.07591 1.75595 1.16820 0.84316 0.93575 1.05163 1.21045 0.91967 0.99125 0.96294 1.20954 0.96084 0.96905 1.06968 1.17506 0.77052 0.95462 1.00764 1.91430 1.32171 1.94775 1.94227 1.20961 0.93789 1.02580 1.10090 1.18680 0.89120 0.89557 0.94365 1.83427 1.34072 1.29734 1.65484 1.20629 0.95339 0.98562 1.33203 0.90485 1.25400 1.05497 0.93841 0.94284 1.69749 1.39235 1.12333 1.34765 0.85149 0.76814 0.80090 0.78302 1.18286 1.20228 1.17102 0.87019 0.89778 0.86894 0.74232 0.92510 0.92140 0.88229 0.88729 0.92338 0.91557 0.74917 0.74638 0.81915 0.82339 0.85559 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.82 10.32 71.24 0.74 -0.08 16 2 C 0.50 7.11 7.94 87.66 0.70 7.81 16 3 O -0.61 -15.78 17.09 -3.03 -0.05 -15.83 16 4 N -0.72 -6.21 5.56 -463.07 -2.57 -8.78 16 5 C 0.12 1.37 5.67 86.38 0.49 1.86 16 6 C -0.12 -0.86 5.44 30.59 0.17 -0.70 16 7 C 0.14 2.06 5.68 86.38 0.49 2.55 16 8 N -0.73 -12.92 5.56 -478.51 -2.66 -15.59 16 9 C 0.70 19.78 8.37 179.06 1.50 21.28 16 10 O -0.61 -21.13 13.51 -4.03 -0.05 -21.18 16 11 N -0.67 -20.45 5.30 -316.70 -1.68 -22.12 16 12 C 0.10 3.63 6.45 38.22 0.25 3.87 16 13 C -0.06 -2.19 8.71 22.37 0.19 -1.99 16 14 C -0.19 -6.32 10.02 22.33 0.22 -6.10 16 15 C 0.11 4.34 7.29 22.37 0.16 4.50 16 16 F -0.15 -5.56 17.26 44.97 0.78 -4.78 16 17 C -0.25 -11.19 9.14 22.42 0.20 -10.98 16 18 C 0.14 5.91 6.66 22.68 0.15 6.06 16 19 O -0.22 -10.57 8.00 -22.88 -0.18 -10.76 16 20 C -0.40 -21.97 9.94 67.91 0.68 -21.30 16 21 H 0.08 4.56 5.44 -2.91 -0.02 4.54 16 22 C 0.01 0.47 5.49 84.83 0.47 0.93 16 23 N -0.92 -52.48 13.96 21.61 0.30 -52.18 16 24 Si 0.98 40.02 28.62 68.60 1.96 41.98 16 25 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 26 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 27 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 28 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.08 0.60 8.12 -2.38 -0.02 0.58 16 30 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.42 0.54 8.47 -92.71 -0.79 -0.25 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.41 4.79 8.49 -92.71 -0.79 4.00 16 39 H 0.42 11.38 8.36 -92.71 -0.78 10.61 16 40 H 0.16 5.34 5.78 -2.91 -0.02 5.33 16 41 H 0.16 4.25 8.06 -2.91 -0.02 4.23 16 42 H 0.13 6.12 5.63 -2.91 -0.02 6.10 16 43 H 0.29 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -77.00 375.12 1.00 -76.01 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: -1.25 Total: 25.53 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 6.40 Total: 7.71 kcal Atomic # 7 Polarization: -92.06 SS G_CDS: -6.61 Total: -98.67 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -0.29 Total: -47.77 kcal Atomic # 9 Polarization: -5.56 SS G_CDS: 0.78 Total: -4.78 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 1.96 Total: 41.98 kcal Total: -77.00 1.00 -76.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135310640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.514 kcal (2) G-P(sol) polarization free energy of solvation -77.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds