Wall clock time and date at job start Sat Apr 11 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 111.00570 * 2 1 4 4 C 1.46902 * 111.00135 * 123.95763 * 2 1 3 5 5 C 1.52996 * 109.47425 * 170.00017 * 4 2 1 6 6 N 1.46504 * 109.47242 * 179.97438 * 5 4 2 7 7 C 1.34776 * 119.99916 * 179.97438 * 6 5 4 8 8 O 1.21363 * 120.00313 * 359.97438 * 7 6 5 9 9 C 1.49309 * 119.99733 * 180.27588 * 7 6 5 10 10 O 1.21393 * 119.99874 * 359.72651 * 9 7 6 11 11 N 1.34774 * 119.99764 * 179.72511 * 9 7 6 12 12 C 1.39815 * 119.99767 * 174.44412 * 11 9 7 13 13 C 1.38798 * 120.08560 * 335.17478 * 12 11 9 14 14 C 1.38143 * 120.01629 * 179.70043 * 13 12 11 15 15 C 1.38588 * 120.18544 * 0.59623 * 14 13 12 16 16 F 1.35100 * 119.91567 * 179.70004 * 15 14 13 17 17 C 1.38342 * 120.17026 * 359.68462 * 15 14 13 18 18 C 1.38744 * 119.98326 * 0.02562 * 17 15 14 19 19 O 1.35749 * 120.09146 * 180.02562 * 18 17 15 20 20 C 1.34796 * 117.00105 * 5.16493 * 19 18 17 21 21 H 1.07992 * 120.00296 * 354.97984 * 20 19 18 22 22 C 1.38661 * 119.99861 * 174.98263 * 20 19 18 23 23 N 1.31551 * 120.00110 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99850 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47229 * 90.00284 * 24 22 20 26 26 H 1.48494 * 109.46936 * 210.00068 * 24 22 20 27 27 H 1.48498 * 109.47046 * 330.00027 * 24 22 20 28 28 H 1.09001 * 109.46960 * 296.04498 * 1 2 3 29 29 H 1.09008 * 109.46811 * 56.04592 * 1 2 3 30 30 H 1.08997 * 109.47221 * 176.04307 * 1 2 3 31 31 H 1.08994 * 109.47408 * 183.95288 * 3 2 1 32 32 H 1.08999 * 109.47109 * 303.95778 * 3 2 1 33 33 H 1.09003 * 109.46424 * 63.94937 * 3 2 1 34 34 H 1.09001 * 109.47089 * 49.99790 * 4 2 1 35 35 H 1.08996 * 109.47049 * 289.99919 * 4 2 1 36 36 H 1.08993 * 109.47321 * 59.99544 * 5 4 2 37 37 H 1.09004 * 109.46773 * 299.99699 * 5 4 2 38 38 H 0.97000 * 119.99843 * 0.02562 * 6 5 4 39 39 H 0.96995 * 120.00349 * 354.43624 * 11 9 7 40 40 H 1.08002 * 119.99116 * 0.02562 * 13 12 11 41 41 H 1.07992 * 119.90626 * 180.30032 * 14 13 12 42 42 H 1.08000 * 120.01211 * 180.02562 * 17 15 14 43 43 H 0.96995 * 120.00556 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 3.5044 -0.9554 0.9703 6 7 4.0295 -1.7189 2.1051 7 6 5.3440 -2.0087 2.1718 8 8 6.0927 -1.6376 1.2917 9 6 5.8782 -2.7920 3.3252 10 8 5.1292 -3.1636 4.2054 11 7 7.1918 -3.0866 3.3892 12 6 7.7123 -3.7178 4.5230 13 6 7.0695 -3.5910 5.7466 14 6 7.5816 -4.2204 6.8647 15 6 8.7439 -4.9693 6.7716 16 9 9.2433 -5.5775 7.8698 17 6 9.3941 -5.0961 5.5571 18 6 8.8827 -4.4719 4.4284 19 8 9.5185 -4.5952 3.2354 20 6 10.5808 -5.4238 3.1909 21 1 10.9400 -5.8904 4.0962 22 6 11.2124 -5.6771 1.9827 23 7 12.2494 -6.4853 1.9393 24 14 10.5906 -4.8705 0.4167 25 1 11.2815 -3.5707 0.2214 26 1 10.8686 -5.7578 -0.7410 27 1 9.1273 -4.6419 0.5250 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0828 1.3431 -0.0708 32 1 1.5899 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5089 -1.7407 1.1755 35 1 1.7975 -0.2249 2.0627 36 1 3.9909 0.0192 0.9323 37 1 3.7023 -1.4967 0.0451 38 1 3.4309 -2.0164 2.8080 39 1 7.7761 -2.8608 2.6486 40 1 6.1659 -3.0045 5.8236 41 1 7.0774 -4.1245 7.8148 42 1 10.2995 -5.6807 5.4874 43 1 12.6910 -6.6628 1.0942 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163465410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:07 Heat of formation + Delta-G solvation = -93.919991 kcal Electronic energy + Delta-G solvation = -28641.266924 eV Core-core repulsion = 24216.824157 eV Total energy + Delta-G solvation = -4424.442767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -48.36258 -40.94169 -39.61860 -38.56573 -37.95147 -36.57488 -35.27471 -34.19075 -32.55633 -30.11639 -29.70899 -28.85433 -28.06049 -25.75806 -25.38511 -23.79048 -22.31904 -21.67621 -21.55731 -20.21799 -18.83625 -18.30115 -17.81759 -17.22830 -16.50672 -16.41165 -16.07564 -15.77797 -15.48186 -15.30700 -15.18407 -15.07430 -14.64003 -14.50810 -14.15959 -13.98186 -13.94976 -13.64566 -13.48474 -13.27215 -12.85019 -12.56354 -12.41013 -12.36776 -12.21953 -11.98483 -11.94379 -11.64263 -11.59101 -11.52581 -10.97569 -10.82866 -10.44601 -10.04924 -9.77814 -9.46014 -9.44934 -9.03424 -8.90652 -8.08121 -7.34395 -6.58026 -4.25811 1.15841 1.86165 1.92279 2.23574 3.14254 3.18144 3.20379 3.30929 3.35193 3.79339 4.09773 4.15180 4.33235 4.39016 4.49434 4.57286 4.71311 4.87782 4.88086 4.93107 4.98970 5.10483 5.13642 5.37712 5.38773 5.41223 5.51339 5.57522 5.59825 5.78281 5.89929 5.95732 6.23165 6.45379 6.46882 6.56179 6.70580 6.71850 6.75869 6.94084 7.35626 7.40853 7.57583 7.72139 7.81824 8.02578 8.74201 9.26708 10.48235 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011120 B = 0.002865 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.414896 B = 9771.972453 C =12044.882931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.016 3.984 4 C 0.042 3.958 5 C 0.119 3.881 6 N -0.703 5.703 7 C 0.512 3.488 8 O -0.511 6.511 9 C 0.500 3.500 10 O -0.515 6.515 11 N -0.614 5.614 12 C 0.051 3.949 13 C -0.056 4.056 14 C -0.222 4.222 15 C 0.134 3.866 16 F -0.147 7.147 17 C -0.245 4.245 18 C 0.168 3.832 19 O -0.205 6.205 20 C -0.393 4.393 21 H 0.111 0.889 22 C 0.069 3.931 23 N -0.867 5.867 24 Si 0.902 3.098 25 H -0.269 1.269 26 H -0.279 1.279 27 H -0.257 1.257 28 H 0.027 0.973 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.028 0.972 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.413 0.587 39 H 0.425 0.575 40 H 0.149 0.851 41 H 0.127 0.873 42 H 0.152 0.848 43 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.930 12.538 -0.601 23.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.132 4.132 4 C -0.086 4.086 5 C -0.004 4.004 6 N -0.358 5.358 7 C 0.293 3.707 8 O -0.386 6.386 9 C 0.282 3.718 10 O -0.392 6.392 11 N -0.258 5.258 12 C -0.043 4.043 13 C -0.076 4.076 14 C -0.242 4.242 15 C 0.115 3.885 16 F -0.126 7.126 17 C -0.265 4.265 18 C 0.113 3.887 19 O -0.109 6.109 20 C -0.468 4.468 21 H 0.128 0.872 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.727 3.273 25 H -0.195 1.195 26 H -0.205 1.205 27 H -0.181 1.181 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.249 0.751 39 H 0.263 0.737 40 H 0.166 0.834 41 H 0.145 0.855 42 H 0.169 0.831 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.592 12.319 -1.453 23.189 hybrid contribution -0.158 0.354 0.228 0.450 sum -19.750 12.674 -1.225 23.499 Atomic orbital electron populations 1.22400 0.86525 1.02631 1.00765 1.61840 1.08359 1.14276 1.42331 1.22526 1.01441 0.88392 1.00802 1.22281 0.94545 0.99480 0.92325 1.21409 0.92895 0.96804 0.89320 1.45577 1.08225 1.55890 1.26117 1.20019 0.83059 0.80954 0.86701 1.90812 1.57183 1.51652 1.38937 1.19952 0.82947 0.81871 0.87057 1.90702 1.57032 1.52083 1.39378 1.42815 1.08262 1.55368 1.19386 1.16894 0.96052 1.04459 0.86924 1.20750 0.99640 0.98228 0.88947 1.20531 0.98301 1.05653 0.99725 1.17500 0.93632 0.94949 0.82451 1.91436 1.87286 1.81481 1.52369 1.20974 1.05254 1.09495 0.90810 1.18405 0.90582 0.93291 0.86403 1.83500 1.41604 1.58798 1.26954 1.20771 1.04317 1.23601 0.98080 0.87187 1.24481 0.94993 0.95573 0.98587 1.69627 1.19219 1.33164 1.28320 0.86235 0.80759 0.79417 0.80924 1.19459 1.20471 1.18092 0.95431 0.91004 0.91061 0.90721 0.91031 0.95331 0.89668 0.93749 0.90797 0.89826 0.75130 0.73717 0.83363 0.85520 0.83108 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.57 60.06 0.57 0.71 16 2 N -0.54 -3.86 5.02 -251.26 -1.26 -5.12 16 3 C 0.02 0.10 9.32 60.07 0.56 0.66 16 4 C 0.04 0.29 5.07 -3.82 -0.02 0.27 16 5 C 0.12 1.06 5.60 -4.04 -0.02 1.04 16 6 N -0.70 -7.26 5.55 -60.78 -0.34 -7.60 16 7 C 0.51 7.21 7.88 -11.65 -0.09 7.12 16 8 O -0.51 -8.52 16.48 5.49 0.09 -8.43 16 9 C 0.50 7.87 7.69 -11.65 -0.09 7.78 16 10 O -0.51 -8.31 13.64 5.46 0.07 -8.23 16 11 N -0.61 -10.85 5.27 -10.17 -0.05 -10.90 16 12 C 0.05 0.98 6.45 -83.52 -0.54 0.44 16 13 C -0.06 -0.96 8.71 -39.41 -0.34 -1.31 16 14 C -0.22 -3.77 10.02 -39.49 -0.40 -4.17 16 15 C 0.13 2.55 7.29 -39.41 -0.29 2.26 16 16 F -0.15 -2.71 17.26 2.25 0.04 -2.67 16 17 C -0.24 -5.15 9.14 -39.36 -0.36 -5.51 16 18 C 0.17 3.66 6.67 -38.90 -0.26 3.40 16 19 O -0.20 -4.96 8.00 0.15 0.00 -4.96 16 20 C -0.39 -10.44 9.95 30.89 0.31 -10.13 16 21 H 0.11 3.00 5.43 -52.49 -0.29 2.72 16 22 C 0.07 1.84 5.49 -17.52 -0.10 1.75 16 23 N -0.87 -24.05 13.96 55.48 0.77 -23.27 16 24 Si 0.90 20.72 28.62 -169.99 -4.86 15.85 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 28 H 0.03 0.14 8.14 -51.93 -0.42 -0.29 16 29 H 0.07 0.34 8.12 -51.92 -0.42 -0.08 16 30 H 0.07 0.36 8.12 -51.93 -0.42 -0.07 16 31 H 0.07 0.49 6.47 -51.93 -0.34 0.15 16 32 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 33 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.08 0.53 8.06 -51.93 -0.42 0.11 16 35 H 0.04 0.27 8.12 -51.93 -0.42 -0.15 16 36 H 0.07 0.68 6.55 -51.93 -0.34 0.34 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.41 3.56 7.94 -40.82 -0.32 3.23 16 39 H 0.42 7.61 7.82 -40.82 -0.32 7.29 16 40 H 0.15 2.39 5.78 -52.49 -0.30 2.08 16 41 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.15 3.33 5.63 -52.49 -0.30 3.03 16 43 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 370.94 15.07 5.59 5.59 Total: -1.00 -29.51 370.94 -6.14 -35.65 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -5.14 Total: 9.79 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -1.06 Total: 4.30 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -0.88 Total: -46.89 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: 0.17 Total: -21.63 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.04 Total: -2.67 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.86 Total: 15.85 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.51 -6.14 -35.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163465410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.266 kcal (2) G-P(sol) polarization free energy of solvation -29.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds