Wall clock time and date at job start Sat Apr 11 2020 05:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47111 * 2 1 4 4 C 1.46496 * 120.00200 * 270.00626 * 3 2 1 5 5 C 1.50700 * 109.46806 * 269.99544 * 4 3 2 6 6 H 1.07994 * 120.00182 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99870 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99782 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00074 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47431 * 59.99696 * 9 7 5 11 11 H 1.48500 * 109.47240 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46994 * 299.99904 * 9 7 5 13 13 C 1.34781 * 119.99551 * 89.99767 * 3 2 1 14 14 O 1.21284 * 119.99594 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00002 * 0.02562 * 13 3 2 16 16 N 1.46506 * 109.46810 * 179.97438 * 15 13 3 17 17 C 1.34124 * 118.61543 * 264.99754 * 16 15 13 18 18 C 1.37884 * 122.18166 * 179.70204 * 17 16 15 19 19 C 1.43198 * 120.53980 * 180.02562 * 18 17 16 20 20 N 8.27227 * 124.86037 * 66.04007 * 2 1 3 21 21 C 1.47139 * 118.91678 * 0.02562 * 18 17 16 22 22 O 1.21882 * 121.40315 * 179.97438 * 21 18 17 23 23 C 1.47432 * 117.19086 * 359.97438 * 21 18 17 24 24 C 1.39501 * 121.18400 * 180.02562 * 23 21 18 25 25 C 1.36718 * 119.71721 * 179.97438 * 24 23 21 26 26 C 1.38779 * 120.44787 * 0.02562 * 25 24 23 27 27 C 1.37759 * 120.72228 * 359.97438 * 26 25 24 28 28 C 1.37723 * 118.61627 * 84.72863 * 16 15 13 29 29 H 1.09004 * 109.46927 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47328 * 299.99613 * 1 2 3 31 31 H 1.08995 * 109.47661 * 59.99566 * 1 2 3 32 32 H 1.09001 * 109.46821 * 240.00533 * 2 1 3 33 33 H 1.08995 * 109.47661 * 120.00434 * 2 1 3 34 34 H 1.08993 * 109.47379 * 29.99823 * 4 3 2 35 35 H 1.09004 * 109.47068 * 150.00128 * 4 3 2 36 36 H 0.97006 * 119.99297 * 180.02562 * 8 7 5 37 37 H 1.08992 * 109.47342 * 59.99838 * 15 13 3 38 38 H 1.08994 * 109.46872 * 299.99114 * 15 13 3 39 39 H 1.07999 * 118.90841 * 359.71986 * 17 16 15 40 40 H 1.07998 * 120.14303 * 0.02562 * 24 23 21 41 41 H 1.08007 * 119.77598 * 180.02562 * 25 24 23 42 42 H 1.07994 * 119.64029 * 180.02562 * 26 25 24 43 43 H 1.07995 * 120.08610 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6856 1.8352 -1.7037 6 1 4.3425 1.2304 -1.0962 7 6 4.1492 2.3908 -2.8774 8 7 3.3494 3.1276 -3.6170 9 14 5.9132 2.0968 -3.4171 10 1 6.1401 0.6401 -3.5956 11 1 6.1610 2.7980 -4.7024 12 1 6.8411 2.6191 -2.3819 13 6 2.2429 2.0165 1.1673 14 8 2.6476 3.1598 1.1673 15 6 1.9922 1.3058 2.4723 16 7 2.3099 2.2033 3.5859 17 6 3.5291 2.1322 4.1404 18 6 3.9083 2.9455 5.1873 19 6 5.2198 2.8400 5.7526 20 7 6.2582 2.7565 6.2029 21 6 2.9434 3.9234 5.7141 22 8 3.2304 4.6642 6.6384 23 6 1.6147 3.9694 5.0768 24 6 0.6366 4.8649 5.5097 25 6 -0.5853 4.8823 4.8967 26 6 -0.8585 4.0152 3.8481 27 6 0.0939 3.1235 3.4060 28 6 1.3461 3.0882 4.0156 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.5816 1.6879 -2.0283 35 1 2.0954 3.1412 -1.1382 36 1 3.6755 3.5182 -4.4429 37 1 2.6226 0.4186 2.5299 38 1 0.9443 1.0114 2.5302 39 1 4.2374 1.4143 3.7539 40 1 0.8440 5.5422 6.3250 41 1 -1.3432 5.5756 5.2308 42 1 -1.8280 4.0404 3.3730 43 1 -0.1296 2.4537 2.5888 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171554863.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:16 Heat of formation + Delta-G solvation = 15.379565 kcal Electronic energy + Delta-G solvation = -28919.549082 eV Core-core repulsion = 24930.615124 eV Total energy + Delta-G solvation = -3988.933958 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.64521 -39.47569 -38.20281 -37.76684 -36.23278 -35.62836 -33.19355 -32.74412 -31.12603 -30.81060 -30.40037 -28.69917 -26.66564 -24.61544 -24.35197 -23.33066 -23.08962 -21.53906 -20.11056 -19.01457 -18.60926 -17.70149 -17.20361 -16.57938 -16.50320 -15.97663 -15.43608 -15.26148 -15.02539 -14.95534 -14.57264 -14.32767 -14.11800 -13.83249 -13.58058 -13.56469 -13.28929 -13.11853 -12.91772 -12.76942 -12.46870 -12.33008 -12.19730 -12.16312 -12.07894 -11.81830 -11.45020 -11.37105 -11.11503 -10.96746 -10.70103 -10.29677 -9.85311 -9.73196 -9.51551 -9.39477 -9.23986 -8.57417 -8.00708 -7.89889 -6.19382 -4.25307 0.48479 0.59006 1.44297 2.04082 2.54685 2.82679 2.87478 3.22462 3.28556 3.30545 3.41024 3.48533 3.79611 3.89742 4.04011 4.23725 4.31469 4.48871 4.53351 4.55741 4.63310 4.77501 4.86969 5.02884 5.05970 5.08230 5.16130 5.28845 5.31023 5.44309 5.57597 5.63881 5.69269 5.73568 5.96728 6.09142 6.19959 6.24042 6.26310 6.45339 6.71972 6.77128 7.18389 7.26122 7.63945 7.74679 7.75346 8.02249 8.04592 8.56081 8.79114 9.40748 10.88699 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010578 B = 0.003693 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.376588 B = 7580.193926 C = 8919.350993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.100 3.900 3 N -0.588 5.588 4 C 0.248 3.752 5 C -0.533 4.533 6 H 0.057 0.943 7 C 0.065 3.935 8 N -0.892 5.892 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 C 0.483 3.517 14 O -0.517 6.517 15 C 0.060 3.940 16 N -0.459 5.459 17 C 0.257 3.743 18 C -0.244 4.244 19 C 0.290 3.710 20 N -0.437 5.437 21 C 0.445 3.555 22 O -0.484 6.484 23 C -0.179 4.179 24 C -0.032 4.032 25 C -0.152 4.152 26 C -0.056 4.056 27 C -0.158 4.158 28 C 0.196 3.804 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.035 0.965 35 H 0.044 0.956 36 H 0.266 0.734 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.174 0.826 40 H 0.140 0.860 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.180 -7.356 12.237 19.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 N -0.320 5.320 4 C 0.129 3.871 5 C -0.572 4.572 6 H 0.075 0.925 7 C -0.138 4.138 8 N -0.530 5.530 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.266 3.734 14 O -0.393 6.393 15 C -0.065 4.065 16 N -0.143 5.143 17 C 0.119 3.881 18 C -0.257 4.257 19 C -0.024 4.024 20 N -0.114 5.114 21 C 0.328 3.672 22 O -0.364 6.364 23 C -0.182 4.182 24 C -0.051 4.051 25 C -0.171 4.171 26 C -0.075 4.075 27 C -0.178 4.178 28 C 0.097 3.903 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.191 0.809 40 H 0.158 0.842 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.322 -6.451 13.062 18.450 hybrid contribution 0.598 -0.242 -0.968 1.164 sum -10.723 -6.694 12.093 17.494 Atomic orbital electron populations 1.22243 0.96382 1.01881 1.02423 1.21540 0.93795 0.83895 1.03185 1.48308 1.62960 1.13297 1.07445 1.19341 0.96563 0.93635 0.77518 1.21321 0.96738 1.32543 1.06585 0.92492 1.24916 0.97895 0.94703 0.96320 1.69908 1.35825 1.32921 1.14364 0.86571 0.84616 0.78317 0.78019 1.20168 1.21068 1.20116 1.20301 0.80469 0.87592 0.85039 1.90800 1.44699 1.17305 1.86473 1.22410 1.05799 0.92974 0.85313 1.42437 1.10419 1.32441 1.28978 1.21782 0.84788 0.93463 0.88033 1.17558 0.91923 1.09566 1.06633 1.24537 0.91480 0.93339 0.93051 1.81159 1.11647 1.09083 1.09500 1.19283 0.85080 0.80855 0.81951 1.90704 1.79445 1.39663 1.26553 1.20024 0.97428 1.00905 0.99880 1.20842 0.91500 0.94916 0.97792 1.20906 0.97515 1.00856 0.97779 1.21152 0.98789 0.92831 0.94707 1.20841 0.91869 1.03089 1.02006 1.17837 0.88817 0.89934 0.93724 0.91717 0.93268 0.91646 0.89241 0.91735 0.94669 0.93752 0.92483 0.85539 0.85821 0.80937 0.84182 0.85026 0.84828 0.84871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 10.24 37.16 0.38 -1.15 16 2 C 0.10 1.13 5.93 -4.04 -0.02 1.10 16 3 N -0.59 -9.73 2.46 -175.06 -0.43 -10.16 16 4 C 0.25 5.66 5.16 -5.20 -0.03 5.64 16 5 C -0.53 -13.73 9.39 -34.44 -0.32 -14.06 16 6 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -25.02 13.29 55.43 0.74 -24.28 16 9 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.48 7.62 7.44 -10.98 -0.08 7.54 16 14 O -0.52 -10.98 15.89 5.55 0.09 -10.89 16 15 C 0.06 0.56 3.97 -5.19 -0.02 0.54 16 16 N -0.46 -5.03 2.16 -115.40 -0.25 -5.28 16 17 C 0.26 2.80 9.89 -16.68 -0.16 2.64 16 18 C -0.24 -3.34 5.91 -104.49 -0.62 -3.96 16 19 C 0.29 4.53 15.09 -22.51 -0.34 4.19 16 20 N -0.44 -7.60 18.53 41.80 0.77 -6.82 16 21 C 0.44 6.72 7.14 -32.23 -0.23 6.49 16 22 O -0.48 -8.62 16.98 5.03 0.09 -8.54 16 23 C -0.18 -2.32 5.89 -104.82 -0.62 -2.94 16 24 C -0.03 -0.35 9.61 -39.66 -0.38 -0.74 16 25 C -0.15 -1.34 9.98 -39.93 -0.40 -1.74 16 26 C -0.06 -0.48 10.01 -39.56 -0.40 -0.88 16 27 C -0.16 -1.59 9.04 -39.35 -0.36 -1.95 16 28 C 0.20 2.32 6.35 -83.95 -0.53 1.79 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.37 7.22 -51.93 -0.38 -0.01 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.09 1.13 8.07 -51.93 -0.42 0.71 16 33 H 0.06 0.49 6.44 -51.93 -0.33 0.16 16 34 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.04 1.18 7.42 -51.93 -0.39 0.79 16 36 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.13 0.74 7.09 -51.93 -0.37 0.38 16 38 H 0.12 0.78 5.39 -51.93 -0.28 0.50 16 39 H 0.17 1.33 7.87 -52.49 -0.41 0.91 16 40 H 0.14 1.46 7.78 -52.49 -0.41 1.05 16 41 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 42 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.13 1.15 6.07 -52.49 -0.32 0.83 16 LS Contribution 376.61 15.07 5.68 5.68 Total: -1.00 -36.27 376.61 -7.52 -43.80 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -4.96 Total: -3.41 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -4.23 Total: 4.16 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.83 Total: -46.54 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: 0.17 Total: -19.43 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.27 -7.52 -43.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171554863.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.175 kcal (2) G-P(sol) polarization free energy of solvation -36.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds