Wall clock time and date at job start Sat Apr 11 2020 05:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34774 * 120.00098 * 2 1 4 4 O 1.21281 * 120.00521 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99757 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.46873 * 179.97438 * 5 3 2 7 7 N 1.46498 * 109.47220 * 179.97438 * 6 5 3 8 8 C 1.46502 * 120.00212 * 270.00305 * 7 6 5 9 9 C 1.34777 * 119.99955 * 89.99890 * 7 6 5 10 10 O 1.21600 * 119.99625 * 0.02562 * 9 7 6 11 11 N 1.34780 * 120.00245 * 180.27653 * 9 7 6 12 12 C 1.40133 * 119.99835 * 174.02307 * 11 9 7 13 13 C 1.38694 * 120.07926 * 335.22433 * 12 11 9 14 14 C 1.38199 * 120.02128 * 179.71920 * 13 12 11 15 15 C 1.38545 * 120.17228 * 0.55492 * 14 13 12 16 16 F 1.35101 * 119.92187 * 179.74393 * 15 14 13 17 17 C 1.38343 * 120.15460 * 359.72385 * 15 14 13 18 18 C 1.38740 * 119.97108 * 359.97438 * 17 15 14 19 19 O 1.35787 * 120.08265 * 180.02562 * 18 17 15 20 20 C 1.34808 * 116.99873 * 5.19326 * 19 18 17 21 21 H 1.08003 * 120.00234 * 354.97870 * 20 19 18 22 22 C 1.38635 * 120.00004 * 174.97970 * 20 19 18 23 23 N 1.31575 * 119.99767 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00124 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47034 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47037 * 120.00017 * 24 22 20 27 27 H 1.48502 * 109.47039 * 240.00045 * 24 22 20 28 28 H 1.09003 * 109.47283 * 300.00658 * 1 2 3 29 29 H 1.09001 * 109.46578 * 60.00630 * 1 2 3 30 30 H 1.08992 * 109.47325 * 180.02562 * 1 2 3 31 31 H 0.97000 * 119.99949 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.47312 * 60.00134 * 5 3 2 33 33 H 1.09001 * 109.46982 * 299.99468 * 5 3 2 34 34 H 1.09003 * 109.47070 * 60.00065 * 6 5 3 35 35 H 1.09001 * 109.47297 * 299.99782 * 6 5 3 36 36 H 1.08990 * 109.46931 * 269.99499 * 8 7 6 37 37 H 1.08999 * 109.46973 * 29.99840 * 8 7 6 38 38 H 1.09006 * 109.46946 * 149.99964 * 8 7 6 39 39 H 0.96991 * 119.99527 * 354.02766 * 11 9 7 40 40 H 1.07999 * 119.98580 * 359.97438 * 13 12 11 41 41 H 1.07997 * 119.91368 * 180.25718 * 14 13 12 42 42 H 1.07997 * 120.01510 * 180.02562 * 17 15 14 43 43 H 0.97007 * 120.00005 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2176 -0.0005 5 6 3.6459 1.1671 0.0006 6 6 4.1560 2.6096 -0.0002 7 7 5.6210 2.6096 0.0010 8 6 6.3525 2.6106 1.2703 9 6 6.2958 2.6086 -1.1657 10 8 5.6885 2.6082 -2.2192 11 7 7.6436 2.6030 -1.1646 12 6 8.3446 2.4756 -2.3713 13 6 7.7467 1.8602 -3.4610 14 6 8.4370 1.7403 -4.6522 15 6 9.7311 2.2235 -4.7587 16 9 10.4031 2.0991 -5.9241 17 6 10.3365 2.8335 -3.6746 18 6 9.6470 2.9627 -2.4777 19 8 10.2389 3.5615 -1.4124 20 6 11.4562 4.1044 -1.6139 21 1 11.9518 3.9810 -2.5655 22 6 12.0720 4.8213 -0.5996 23 7 11.4680 4.9722 0.5596 24 14 13.7591 5.5731 -0.8785 25 1 14.2179 5.2622 -2.2563 26 1 13.6798 7.0458 -0.7043 27 1 14.7206 5.0096 0.1030 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.9500 -0.8401 0.0004 32 1 4.0096 0.6531 -0.8891 33 1 4.0089 0.6535 0.8909 34 1 3.7923 3.1240 0.8893 35 1 3.7930 3.1228 -0.8907 36 1 6.5339 3.6384 1.5842 37 1 5.7628 2.0973 2.0299 38 1 7.3050 2.0966 1.1411 39 1 8.1282 2.6870 -0.3287 40 1 6.7398 1.4781 -3.3797 41 1 7.9682 1.2645 -5.5008 42 1 11.3452 3.2097 -3.7603 43 1 11.8990 5.4735 1.2695 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178155064.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:25 Heat of formation + Delta-G solvation = -120.165914 kcal Electronic energy + Delta-G solvation = -29057.552064 eV Core-core repulsion = 24631.971188 eV Total energy + Delta-G solvation = -4425.580876 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -49.80123 -41.92938 -40.80914 -40.34881 -38.20540 -36.81420 -35.73423 -35.57769 -34.29274 -32.61323 -31.05661 -29.83626 -28.33107 -27.45535 -27.19526 -25.00243 -23.89226 -23.03610 -21.49865 -20.90127 -20.13355 -19.76922 -18.94137 -18.44430 -18.16790 -17.22196 -17.01306 -16.89506 -16.69538 -16.52234 -16.37905 -16.21264 -15.93587 -15.52125 -15.25101 -15.16164 -14.97219 -14.54845 -14.38678 -14.19920 -13.98292 -13.82172 -13.57657 -13.42750 -13.28756 -13.11549 -13.03144 -12.98981 -12.62607 -12.33297 -12.11845 -12.07252 -11.63971 -11.36064 -11.06770 -10.98108 -10.81156 -10.12682 -9.82880 -9.51917 -8.65959 -8.50076 -6.15054 0.23088 0.47591 1.38005 1.43582 1.46382 1.53949 1.61073 1.95366 2.14650 2.35126 2.72160 2.86146 3.03933 3.22337 3.47852 3.80587 3.93012 4.00189 4.04496 4.17425 4.24477 4.37478 4.47844 4.53384 4.57698 4.60401 4.63532 4.78070 4.89201 4.95315 4.96551 5.00541 5.02490 5.24011 5.28409 5.35614 5.44976 5.48735 5.57909 5.82169 5.95122 6.07926 6.52954 6.78897 6.95152 7.24305 7.38962 7.64124 8.70915 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013313 B = 0.002776 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.650216 B =10083.744509 C =11945.756402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.725 5.725 3 C 0.515 3.485 4 O -0.586 6.586 5 C -0.146 4.146 6 C 0.150 3.850 7 N -0.622 5.622 8 C 0.070 3.930 9 C 0.700 3.300 10 O -0.607 6.607 11 N -0.664 5.664 12 C 0.085 3.915 13 C -0.063 4.063 14 C -0.199 4.199 15 C 0.116 3.884 16 F -0.146 7.146 17 C -0.260 4.260 18 C 0.126 3.874 19 O -0.204 6.204 20 C -0.414 4.414 21 H 0.099 0.901 22 C -0.009 4.009 23 N -0.905 5.905 24 Si 1.010 2.990 25 H -0.258 1.258 26 H -0.271 1.271 27 H -0.266 1.266 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.110 0.890 31 H 0.419 0.581 32 H 0.098 0.902 33 H 0.128 0.872 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.113 0.887 38 H 0.069 0.931 39 H 0.415 0.585 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.136 0.864 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.038 -12.455 3.083 19.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.377 5.377 3 C 0.302 3.698 4 O -0.466 6.466 5 C -0.187 4.187 6 C 0.027 3.973 7 N -0.358 5.358 8 C -0.072 4.072 9 C 0.402 3.598 10 O -0.488 6.488 11 N -0.312 5.312 12 C -0.011 4.011 13 C -0.084 4.084 14 C -0.219 4.219 15 C 0.096 3.904 16 F -0.124 7.124 17 C -0.281 4.281 18 C 0.072 3.928 19 O -0.110 6.110 20 C -0.489 4.489 21 H 0.116 0.884 22 C -0.208 4.208 23 N -0.541 5.541 24 Si 0.831 3.169 25 H -0.181 1.181 26 H -0.196 1.196 27 H -0.191 1.191 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.129 0.871 31 H 0.256 0.744 32 H 0.116 0.884 33 H 0.146 0.854 34 H 0.116 0.884 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.131 0.869 38 H 0.087 0.913 39 H 0.253 0.747 40 H 0.176 0.824 41 H 0.175 0.825 42 H 0.154 0.846 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.971 -11.602 2.828 19.150 hybrid contribution 1.498 0.361 0.081 1.543 sum -13.473 -11.241 2.908 17.786 Atomic orbital electron populations 1.21665 0.78948 1.04185 1.01337 1.45775 1.08399 1.08738 1.74774 1.20836 0.90524 0.83680 0.74743 1.90710 1.71495 1.33001 1.51443 1.21951 0.90722 0.99518 1.06488 1.21013 0.76359 0.96110 1.03854 1.47049 1.06822 1.77177 1.04723 1.22026 0.97472 1.02952 0.84768 1.15978 0.81156 0.77923 0.84701 1.90819 1.68116 1.59082 1.30783 1.42445 1.04822 1.75019 1.08887 1.16977 0.89509 1.05753 0.88886 1.20991 1.00624 0.96363 0.90426 1.20885 0.93089 1.07858 1.00032 1.17451 0.91388 1.00559 0.80990 1.91424 1.80514 1.94218 1.46275 1.20899 1.02975 1.10953 0.93271 1.19026 0.91731 0.94037 0.87962 1.83875 1.32732 1.63971 1.30419 1.21758 0.91866 1.33247 1.02071 0.88410 1.26345 1.03773 0.96495 0.94232 1.70117 1.39945 1.39819 1.04259 0.84629 0.75163 0.77857 0.79275 1.18115 1.19648 1.19093 0.92965 0.93636 0.87123 0.74415 0.88359 0.85411 0.88395 0.92042 0.92440 0.86878 0.91269 0.74734 0.82354 0.82527 0.84641 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 10.70 127.77 1.37 2.27 16 2 N -0.72 -9.03 5.71 -484.52 -2.77 -11.80 16 3 C 0.52 10.24 7.83 87.66 0.69 10.92 16 4 O -0.59 -17.07 15.98 -3.03 -0.05 -17.12 16 5 C -0.15 -2.47 6.02 29.85 0.18 -2.29 16 6 C 0.15 3.53 4.70 86.38 0.41 3.93 16 7 N -0.62 -16.16 2.87 -864.89 -2.49 -18.65 16 8 C 0.07 1.39 10.16 127.77 1.30 2.69 16 9 C 0.70 24.27 8.08 179.05 1.45 25.72 16 10 O -0.61 -24.03 13.09 -4.03 -0.05 -24.08 16 11 N -0.66 -24.91 5.12 -316.69 -1.62 -26.53 16 12 C 0.08 3.54 6.45 38.22 0.25 3.78 16 13 C -0.06 -2.37 8.71 22.37 0.19 -2.17 16 14 C -0.20 -6.96 10.02 22.33 0.22 -6.73 16 15 C 0.12 4.51 7.29 22.37 0.16 4.68 16 16 F -0.15 -5.34 17.26 44.97 0.78 -4.57 16 17 C -0.26 -11.46 9.14 22.41 0.20 -11.26 16 18 C 0.13 5.93 6.66 22.68 0.15 6.08 16 19 O -0.20 -11.00 9.17 -22.92 -0.21 -11.21 16 20 C -0.41 -22.38 9.49 67.91 0.64 -21.73 16 21 H 0.10 5.00 5.20 -2.91 -0.02 4.98 16 22 C -0.01 -0.47 5.49 84.83 0.47 0.00 16 23 N -0.90 -50.31 13.67 21.61 0.30 -50.02 16 24 Si 1.01 40.67 29.55 68.60 2.03 42.69 16 25 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 26 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 27 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.42 2.40 8.83 -92.71 -0.82 1.58 16 32 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.10 2.04 8.03 -2.39 -0.02 2.02 16 35 H 0.06 1.87 7.38 -2.39 -0.02 1.86 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.11 1.37 8.07 -2.39 -0.02 1.35 16 38 H 0.07 1.46 6.45 -2.38 -0.02 1.45 16 39 H 0.41 15.26 6.16 -92.71 -0.57 14.69 16 40 H 0.16 5.69 5.79 -2.91 -0.02 5.68 16 41 H 0.16 4.42 8.06 -2.91 -0.02 4.39 16 42 H 0.14 6.06 5.63 -2.91 -0.02 6.04 16 43 H 0.27 14.03 8.31 -92.70 -0.77 13.25 16 Total: -1.00 -74.03 371.27 3.29 -70.74 By element: Atomic # 1 Polarization: 34.94 SS G_CDS: -0.30 Total: 34.64 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 7.68 Total: 15.89 kcal Atomic # 7 Polarization: -100.42 SS G_CDS: -6.58 Total: -106.99 kcal Atomic # 8 Polarization: -52.09 SS G_CDS: -0.31 Total: -52.40 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.78 Total: -4.57 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.69 kcal Total: -74.03 3.29 -70.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178155064.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.427 kcal (2) G-P(sol) polarization free energy of solvation -74.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds