Wall clock time and date at job start Sat Apr 11 2020 05:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28084 * 119.16098 * 2 1 4 4 C 1.31198 * 122.96879 * 179.73335 * 3 2 1 5 5 C 1.39826 * 119.66676 * 359.10860 * 4 3 2 6 6 C 1.36844 * 118.74773 * 1.27146 * 5 4 3 7 7 C 1.34686 * 119.15783 * 180.02562 * 2 1 3 8 8 O 1.22061 * 120.52549 * 0.97746 * 7 2 1 9 9 C 1.50500 * 122.52513 * 181.38382 * 5 4 3 10 10 N 1.46784 * 109.46739 * 348.13318 * 9 5 4 11 11 C 1.34777 * 121.27054 * 224.50282 * 10 9 5 12 12 O 1.21585 * 120.00031 * 183.85756 * 11 10 9 13 13 C 1.47646 * 119.99539 * 3.86477 * 11 10 9 14 14 C 1.40015 * 119.89121 * 142.19798 * 13 11 10 15 15 C 1.36316 * 120.10050 * 179.97438 * 14 13 11 16 16 C 1.40890 * 119.89709 * 0.02562 * 15 14 13 17 17 C 1.41111 * 120.10419 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99681 * 152.61007 * 17 16 15 19 19 C 1.40227 * 119.99980 * 332.60724 * 17 16 15 20 20 N 1.30646 * 119.99886 * 162.45614 * 19 17 16 21 21 Si 1.86798 * 120.00131 * 342.45923 * 19 17 16 22 22 H 1.48505 * 109.46899 * 92.41844 * 21 19 17 23 23 H 1.48496 * 109.46999 * 212.42001 * 21 19 17 24 24 H 1.48497 * 109.47312 * 332.42260 * 21 19 17 25 25 C 1.40886 * 119.78830 * 359.97438 * 16 15 14 26 26 C 1.36316 * 119.89444 * 0.02562 * 25 16 15 27 27 C 1.47175 * 117.46489 * 44.77108 * 10 9 5 28 28 C 1.50631 * 118.00136 * 178.48999 * 4 3 2 29 29 H 1.08997 * 109.47182 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47136 * 119.99728 * 1 2 3 31 31 H 1.08997 * 109.46796 * 239.99615 * 1 2 3 32 32 H 1.08000 * 121.01594 * 179.43879 * 6 5 4 33 33 H 1.09005 * 109.47575 * 228.13115 * 9 5 4 34 34 H 1.09007 * 109.47717 * 108.13528 * 9 5 4 35 35 H 1.07999 * 119.94997 * 0.02562 * 14 13 11 36 36 H 1.08008 * 120.05331 * 180.29322 * 15 14 13 37 37 H 0.96995 * 120.00121 * 180.02562 * 20 19 17 38 38 H 1.08000 * 120.04862 * 180.02562 * 25 16 15 39 39 H 1.07998 * 119.94284 * 180.02562 * 26 25 16 40 40 H 1.09003 * 109.71837 * 54.78851 * 27 10 9 41 41 H 1.09005 * 109.71728 * 175.42610 * 27 10 9 42 42 H 1.09001 * 109.21963 * 280.35178 * 28 4 3 43 43 H 1.08998 * 109.22397 * 39.74214 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0891 1.1185 0.0000 4 6 3.3982 1.2056 0.0051 5 6 4.1693 0.0395 0.0298 6 6 3.5318 -1.1714 0.0215 7 6 2.1212 -1.1762 -0.0005 8 8 1.5052 -2.2298 -0.0189 9 6 5.6736 0.0648 0.0677 10 7 6.1471 1.4259 -0.2111 11 6 7.1729 1.6504 -1.0561 12 8 7.5921 2.7804 -1.2166 13 6 7.7874 0.5242 -1.7868 14 6 8.2086 0.6982 -3.1107 15 6 8.7769 -0.3386 -3.7892 16 6 8.9397 -1.5868 -3.1563 17 6 9.5270 -2.6632 -3.8547 18 1 10.0507 -3.4368 -3.3130 19 6 9.4305 -2.7283 -5.2522 20 7 10.2371 -3.5032 -5.9273 21 14 8.1486 -1.7071 -6.1485 22 1 8.7437 -0.4070 -6.5499 23 1 7.6918 -2.4370 -7.3583 24 1 6.9914 -1.4653 -5.2498 25 6 8.5143 -1.7569 -1.8241 26 6 7.9470 -0.7143 -1.1536 27 6 5.4631 2.5358 0.4718 28 6 4.0157 2.5791 -0.0305 29 1 -0.3633 1.0276 0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 -0.3633 -0.5139 0.8899 32 1 4.0915 -2.0950 0.0307 33 1 6.0676 -0.6183 -0.6849 34 1 6.0176 -0.2446 1.0547 35 1 8.0837 1.6555 -3.5948 36 1 9.1058 -0.2022 -4.8088 37 1 10.1706 -3.5479 -6.8939 38 1 8.6374 -2.7118 -1.3347 39 1 7.6210 -0.8437 -0.1322 40 1 5.4760 2.3687 1.5488 41 1 5.9641 3.4755 0.2389 42 1 3.9999 2.9531 -1.0542 43 1 3.4371 3.2493 0.6052 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270301725.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:50 Heat of formation + Delta-G solvation = 12.403887 kcal Electronic energy + Delta-G solvation = -28918.663041 eV Core-core repulsion = 24929.600048 eV Total energy + Delta-G solvation = -3989.062993 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.22048 -41.29820 -39.44391 -38.93279 -37.95081 -35.74429 -35.21285 -34.26869 -32.63573 -31.80532 -31.08447 -29.73348 -27.93490 -26.83876 -25.81380 -24.31277 -23.84777 -23.09524 -22.28301 -20.69977 -19.63151 -19.40323 -18.38337 -18.12803 -17.87395 -17.35753 -17.26570 -16.92147 -16.31348 -15.85393 -15.75906 -15.41682 -15.23125 -14.95915 -14.69772 -14.49011 -14.47287 -14.36765 -14.09410 -14.06223 -13.74081 -13.58483 -13.54848 -13.32656 -13.01169 -12.76550 -12.57680 -12.42137 -12.15442 -12.11376 -11.97993 -11.55607 -11.07796 -11.03925 -11.02409 -10.63306 -9.84228 -9.64028 -9.51729 -9.45542 -9.04926 -6.61321 -0.62247 0.34943 0.43142 0.87675 1.21006 1.22839 1.34194 1.44063 1.83620 1.97856 2.04864 2.23006 2.58647 2.95214 3.25559 3.43168 3.45026 3.58174 3.91569 4.11839 4.15890 4.25507 4.27103 4.29252 4.30309 4.37285 4.49916 4.56540 4.56880 4.63867 4.64963 4.75044 4.87509 4.89272 4.90956 4.97270 5.01225 5.15183 5.16260 5.46731 5.49383 5.64212 5.76166 5.85789 6.11060 6.27407 6.36264 6.47183 6.61295 6.72053 7.04680 7.25644 8.00894 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012260 B = 0.003531 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.374347 B = 7927.539627 C = 9173.831500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.344 5.344 3 N -0.228 5.228 4 C 0.074 3.926 5 C -0.028 4.028 6 C -0.202 4.202 7 C 0.465 3.535 8 O -0.576 6.576 9 C 0.127 3.873 10 N -0.612 5.612 11 C 0.586 3.414 12 O -0.584 6.584 13 C -0.277 4.277 14 C -0.025 4.025 15 C -0.267 4.267 16 C 0.092 3.908 17 C -0.460 4.460 18 H 0.071 0.929 19 C 0.053 3.947 20 N -0.824 5.824 21 Si 0.964 3.036 22 H -0.261 1.261 23 H -0.277 1.277 24 H -0.252 1.252 25 C -0.223 4.223 26 C -0.043 4.043 27 C 0.111 3.889 28 C -0.060 4.060 29 H 0.123 0.877 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.177 0.823 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.299 0.701 38 H 0.120 0.880 39 H 0.151 0.849 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.107 9.771 12.854 22.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.163 5.163 3 N -0.052 5.052 4 C -0.095 4.095 5 C -0.035 4.035 6 C -0.232 4.232 7 C 0.266 3.734 8 O -0.459 6.459 9 C 0.005 3.995 10 N -0.345 5.345 11 C 0.379 3.621 12 O -0.466 6.466 13 C -0.282 4.282 14 C -0.045 4.045 15 C -0.286 4.286 16 C 0.088 3.912 17 C -0.488 4.488 18 H 0.090 0.910 19 C -0.166 4.166 20 N -0.448 5.448 21 Si 0.788 3.212 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.176 1.176 25 C -0.242 4.242 26 C -0.061 4.061 27 C -0.011 4.011 28 C -0.099 4.099 29 H 0.142 0.858 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.195 0.805 33 H 0.140 0.860 34 H 0.148 0.852 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.138 0.862 39 H 0.169 0.831 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.102 0.898 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -16.973 10.082 12.537 23.386 hybrid contribution 0.572 -0.883 -1.019 1.464 sum -16.401 9.199 11.518 22.052 Atomic orbital electron populations 1.22382 0.72346 1.06628 1.04773 1.46790 1.10752 1.02367 1.56409 1.70973 1.11890 1.11549 1.10833 1.21827 0.87341 0.97531 1.02782 1.21068 0.98371 0.92631 0.91437 1.22737 0.92583 1.00645 1.07285 1.18239 0.90395 0.84177 0.80605 1.90959 1.70290 1.30311 1.54338 1.21410 0.87432 0.85211 1.05485 1.47912 1.33312 1.07940 1.45288 1.18270 0.78621 0.87864 0.77325 1.90677 1.64117 1.25444 1.66363 1.19202 1.17057 0.95378 0.96526 1.20477 0.93357 0.96986 0.93632 1.20806 1.12490 0.94494 1.00859 1.18027 0.87921 0.91568 0.93644 1.19742 1.29405 1.07573 0.92047 0.91048 1.26900 0.96436 0.94907 0.98355 1.69608 1.31697 1.32745 1.10755 0.85538 0.79978 0.78069 0.77637 1.18688 1.20336 1.17592 1.20954 1.07708 0.99699 0.95811 1.21030 0.95180 0.90559 0.99330 1.21902 0.90184 0.91134 0.97832 1.20671 0.95189 0.89630 1.04430 0.85835 0.89661 0.88950 0.80535 0.86005 0.85193 0.87562 0.88313 0.88953 0.86179 0.83133 0.87673 0.88153 0.89751 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.23 127.77 1.31 2.43 16 2 N -0.34 -7.42 3.61 -494.05 -1.79 -9.20 16 3 N -0.23 -4.51 10.69 -47.29 -0.51 -5.02 16 4 C 0.07 1.41 6.73 43.02 0.29 1.70 16 5 C -0.03 -0.57 5.81 -19.87 -0.12 -0.68 16 6 C -0.20 -4.58 9.75 22.64 0.22 -4.36 16 7 C 0.46 12.35 7.48 84.95 0.64 12.99 16 8 O -0.58 -18.98 17.11 -5.51 -0.09 -19.07 16 9 C 0.13 2.45 4.61 85.52 0.39 2.85 16 10 N -0.61 -14.32 2.93 -827.13 -2.42 -16.75 16 11 C 0.59 19.43 7.39 86.73 0.64 20.07 16 12 O -0.58 -22.83 16.35 -3.98 -0.07 -22.90 16 13 C -0.28 -10.30 5.40 -19.93 -0.11 -10.41 16 14 C -0.03 -1.07 9.55 22.25 0.21 -0.86 16 15 C -0.27 -12.25 7.11 22.47 0.16 -12.09 16 16 C 0.09 4.31 5.18 -21.28 -0.11 4.20 16 17 C -0.46 -23.75 9.58 23.46 0.22 -23.53 16 18 H 0.07 3.90 8.06 -2.91 -0.02 3.87 16 19 C 0.05 2.65 5.43 85.35 0.46 3.11 16 20 N -0.82 -42.25 13.92 21.87 0.30 -41.94 16 21 Si 0.96 41.02 24.44 68.60 1.68 42.70 16 22 H -0.26 -10.77 6.55 99.48 0.65 -10.12 16 23 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 24 H -0.25 -10.97 6.89 99.48 0.68 -10.29 16 25 C -0.22 -8.85 9.73 22.47 0.22 -8.63 16 26 C -0.04 -1.43 7.31 22.25 0.16 -1.27 16 27 C 0.11 1.85 6.44 86.34 0.56 2.40 16 28 C -0.06 -0.88 6.13 29.92 0.18 -0.69 16 29 H 0.12 1.11 8.05 -2.39 -0.02 1.09 16 30 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.18 3.53 8.06 -2.91 -0.02 3.51 16 33 H 0.12 2.80 4.43 -2.38 -0.01 2.79 16 34 H 0.13 1.66 7.95 -2.38 -0.02 1.65 16 35 H 0.11 4.29 8.03 -2.91 -0.02 4.26 16 36 H 0.10 4.58 4.27 -2.91 -0.01 4.56 16 37 H 0.30 13.76 8.29 -92.71 -0.77 12.99 16 38 H 0.12 4.39 8.06 -2.91 -0.02 4.36 16 39 H 0.15 3.63 5.71 -2.91 -0.02 3.62 16 40 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.10 1.90 7.06 -2.38 -0.02 1.88 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -68.45 352.12 3.43 -65.02 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.99 Total: 19.93 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: 5.34 Total: -12.77 kcal Atomic # 7 Polarization: -68.50 SS G_CDS: -4.41 Total: -72.91 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -0.16 Total: -41.97 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 1.68 Total: 42.70 kcal Total: -68.45 3.43 -65.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270301725.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.422 kcal (2) G-P(sol) polarization free energy of solvation -68.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds