Wall clock time and date at job start Sat Apr 11 2020 05:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 120.00212 * 2 1 4 4 O 1.21279 * 120.00410 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99541 * 359.97438 * 3 2 1 6 6 C 1.50703 * 109.46605 * 180.02562 * 5 3 2 7 7 N 1.29940 * 126.28768 * 90.02873 * 6 5 3 8 8 O 1.21304 * 110.25537 * 179.97438 * 7 6 5 9 9 C 1.33645 * 109.80827 * 359.97438 * 8 7 6 10 10 C 1.50698 * 126.55242 * 180.02562 * 9 8 7 11 11 S 1.81001 * 109.46955 * 269.97626 * 10 9 8 12 12 C 1.76205 * 99.99871 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00061 * 0.02562 * 12 11 10 14 14 C 1.38794 * 119.99993 * 179.97438 * 12 11 10 15 15 N 1.31628 * 120.00118 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00037 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47576 * 89.99792 * 16 14 12 18 18 H 1.48504 * 109.47229 * 209.99566 * 16 14 12 19 19 H 1.48505 * 109.47213 * 329.99218 * 16 14 12 20 20 N 1.31138 * 106.89494 * 359.76870 * 9 8 7 21 21 C 1.46502 * 120.00062 * 179.97438 * 2 1 3 22 22 C 1.52995 * 109.47349 * 60.00143 * 21 2 1 23 23 C 1.53001 * 109.47404 * 180.02562 * 22 21 2 24 24 C 1.53005 * 109.46820 * 60.00099 * 23 22 21 25 25 C 1.52997 * 109.47145 * 299.99738 * 24 23 22 26 26 C 1.53001 * 109.47048 * 60.00401 * 25 24 23 27 27 H 1.09002 * 109.47391 * 270.00122 * 1 2 3 28 28 H 1.09001 * 109.46813 * 150.00179 * 1 2 3 29 29 H 1.09004 * 109.47041 * 30.00306 * 1 2 3 30 30 H 1.08996 * 109.47057 * 299.99739 * 5 3 2 31 31 H 1.08996 * 109.47084 * 60.00703 * 5 3 2 32 32 H 1.09001 * 109.47021 * 29.97277 * 10 9 8 33 33 H 1.08998 * 109.47301 * 149.97614 * 10 9 8 34 34 H 0.97006 * 120.00345 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.47396 * 180.02562 * 21 2 1 36 36 H 1.09003 * 109.46919 * 300.00394 * 22 21 2 37 37 H 1.09000 * 109.47154 * 59.99586 * 22 21 2 38 38 H 1.08996 * 109.47065 * 299.99934 * 23 22 21 39 39 H 1.08996 * 109.47049 * 179.97438 * 23 22 21 40 40 H 1.09000 * 109.46688 * 179.97438 * 24 23 22 41 41 H 1.09003 * 109.47140 * 59.99836 * 24 23 22 42 42 H 1.09002 * 109.47490 * 300.00787 * 25 24 23 43 43 H 1.08997 * 109.47205 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.47512 * 179.97438 * 26 25 24 45 45 H 1.09003 * 109.47398 * 59.99803 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3647 3.6177 -0.0011 7 7 2.8641 4.2021 -1.0487 8 8 3.6215 5.0886 -0.7141 9 6 3.6785 5.1562 0.6194 10 6 4.5011 6.1203 1.4348 11 16 6.1280 5.3978 1.7626 12 6 6.8566 6.6983 2.7021 13 1 6.2943 7.5974 2.9063 14 6 8.1528 6.5666 3.1806 15 7 8.6969 7.5379 3.8829 16 14 9.1251 5.0111 2.8280 17 1 9.8759 5.1739 1.5572 18 1 10.0795 4.7616 3.9381 19 1 8.1931 3.8611 2.7086 20 7 2.8774 4.2271 1.0827 21 6 2.1975 -1.2687 0.0006 22 6 1.8280 -2.0716 -1.2483 23 6 2.5925 -3.3969 -1.2474 24 6 2.2222 -4.1984 0.0023 25 6 2.5918 -3.3956 1.2511 26 6 1.8273 -2.0703 1.2502 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 -0.8900 -0.5138 29 1 -0.3633 0.8900 -0.5139 30 1 0.7591 2.5298 -0.8908 31 1 0.7585 2.5302 0.8892 32 1 4.6220 7.0522 0.8825 33 1 3.9956 6.3207 2.3794 34 1 9.6029 7.4461 4.2170 35 1 3.2692 -1.0696 0.0009 36 1 0.7563 -2.2707 -1.2482 37 1 2.0913 -1.5004 -2.1385 38 1 3.6642 -3.1981 -1.2472 39 1 2.3289 -3.9690 -2.1369 40 1 2.7665 -5.1427 0.0026 41 1 1.1504 -4.3971 0.0021 42 1 3.6635 -3.1967 1.2513 43 1 2.3284 -3.9667 2.1413 44 1 2.0902 -1.4984 2.1402 45 1 0.7555 -2.2690 1.2500 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277873449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:59 Heat of formation + Delta-G solvation = -8.394649 kcal Electronic energy + Delta-G solvation = -26710.043323 eV Core-core repulsion = 22855.522389 eV Total energy + Delta-G solvation = -3854.520934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.69746 -41.41099 -39.19821 -37.10241 -36.16943 -34.95774 -34.70614 -32.04290 -31.73864 -30.30558 -29.74916 -27.90128 -27.77151 -25.04051 -23.93353 -23.59225 -22.66079 -20.79157 -20.30749 -19.87896 -19.36632 -18.50813 -18.11214 -17.46323 -17.18635 -16.82083 -16.30983 -16.10698 -15.86787 -15.39291 -15.14083 -15.04737 -14.93898 -14.66771 -14.42294 -14.31983 -13.77823 -13.68346 -13.50553 -13.37326 -13.21801 -13.12939 -13.11988 -13.09177 -13.02364 -12.64641 -12.18399 -12.15194 -12.10371 -11.97420 -11.60872 -11.33880 -11.25922 -11.22904 -11.20711 -10.88161 -10.58724 -9.70801 -9.11953 -8.54356 -6.28764 -0.20387 0.77728 1.19529 1.28503 1.42397 1.44626 1.53774 1.72793 1.90267 2.19993 2.45034 2.61494 2.83628 2.88563 3.40552 3.67762 3.75397 3.77659 3.95167 4.03657 4.07771 4.15773 4.24715 4.27456 4.34191 4.45046 4.45956 4.49619 4.53401 4.64846 4.65042 4.73572 4.79958 4.83036 4.95974 5.07069 5.09056 5.15439 5.17340 5.30430 5.35904 5.46954 5.55033 5.69150 6.11554 6.22915 6.89622 6.98340 7.00480 8.57669 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013298 B = 0.002599 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.019708 B =10772.725995 C =12263.331193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.604 5.604 3 C 0.512 3.488 4 O -0.588 6.588 5 C -0.042 4.042 6 C 0.185 3.815 7 N -0.393 5.393 8 O 0.073 5.927 9 C 0.216 3.784 10 C 0.005 3.995 11 S -0.190 6.190 12 C -0.516 4.516 13 H 0.075 0.925 14 C 0.052 3.948 15 N -0.910 5.910 16 Si 0.908 3.092 17 H -0.261 1.261 18 H -0.257 1.257 19 H -0.242 1.242 20 N -0.484 5.484 21 C 0.135 3.865 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.115 4.115 25 C -0.120 4.120 26 C -0.118 4.118 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.158 0.842 31 H 0.157 0.843 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.279 0.721 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.051 0.949 38 H 0.045 0.955 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.045 0.955 43 H 0.078 0.922 44 H 0.047 0.953 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.634 -22.366 -9.556 33.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.335 5.335 3 C 0.299 3.701 4 O -0.468 6.468 5 C -0.082 4.082 6 C -0.089 4.089 7 N -0.103 5.103 8 O 0.017 5.983 9 C -0.005 4.005 10 C -0.143 4.143 11 S 0.035 5.965 12 C -0.664 4.664 13 H 0.093 0.907 14 C -0.155 4.155 15 N -0.548 5.548 16 Si 0.730 3.270 17 H -0.185 1.185 18 H -0.182 1.182 19 H -0.166 1.166 20 N -0.219 5.219 21 C 0.032 3.968 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.152 4.152 25 C -0.158 4.158 26 C -0.157 4.157 27 H 0.094 0.906 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.175 0.825 31 H 0.175 0.825 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.064 0.936 43 H 0.096 0.904 44 H 0.066 0.934 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -22.862 -23.739 -10.270 34.521 hybrid contribution 0.920 1.349 0.619 1.746 sum -21.942 -22.390 -9.651 32.801 Atomic orbital electron populations 1.22264 0.76284 1.05633 1.03976 1.47955 1.08887 1.04417 1.72280 1.20664 0.87406 0.86339 0.75651 1.90775 1.16633 1.87848 1.51524 1.20198 0.94250 0.83840 1.09940 1.25608 1.00077 0.99936 0.83308 1.74508 1.08065 1.03296 1.24395 1.85267 1.47577 1.40772 1.24710 1.27960 0.94907 0.95798 0.81819 1.21605 0.94812 0.96787 1.01132 1.84713 1.11511 1.29110 1.71131 1.22220 1.02817 1.02996 1.38359 0.90709 1.25449 0.97475 0.99227 0.93321 1.69987 1.16124 1.33598 1.35042 0.85972 0.80515 0.81012 0.79506 1.18527 1.18151 1.16631 1.71873 1.12407 1.07970 1.29687 1.21157 0.96325 0.82520 0.96835 1.21819 1.02169 0.95865 0.95756 1.21524 0.99455 0.95408 0.99298 1.21537 1.02460 0.98090 0.93102 1.21528 0.99420 0.95440 0.99390 1.21810 1.02104 0.95875 0.95868 0.90559 0.88538 0.88719 0.82454 0.82526 0.85052 0.85195 0.91174 0.92446 0.88907 0.93024 0.93565 0.90113 0.91204 0.90159 0.93634 0.90360 0.93434 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.37 9.30 127.77 1.19 1.56 16 2 N -0.60 -10.51 2.76 -822.57 -2.27 -12.78 16 3 C 0.51 13.44 7.67 87.66 0.67 14.11 16 4 O -0.59 -23.12 15.36 -3.02 -0.05 -23.17 16 5 C -0.04 -0.85 4.88 29.10 0.14 -0.71 16 6 C 0.18 5.95 6.71 138.47 0.93 6.88 16 7 N -0.39 -13.84 12.16 -60.31 -0.73 -14.57 16 8 O 0.07 2.70 11.31 74.82 0.85 3.55 16 9 C 0.22 8.05 7.77 88.38 0.69 8.74 16 10 C 0.01 0.20 6.30 71.24 0.45 0.65 16 11 S -0.19 -9.38 19.39 -56.49 -1.10 -10.47 16 12 C -0.52 -29.21 10.04 67.95 0.68 -28.53 16 13 H 0.07 4.41 8.03 -2.91 -0.02 4.39 16 14 C 0.05 2.97 5.50 84.86 0.47 3.44 16 15 N -0.91 -54.41 13.97 21.65 0.30 -54.11 16 16 Si 0.91 44.52 27.74 68.60 1.90 46.42 16 17 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 18 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 19 H -0.24 -12.01 6.74 99.48 0.67 -11.34 16 20 N -0.48 -17.82 11.55 -303.18 -3.50 -21.33 16 21 C 0.13 2.49 2.52 44.99 0.11 2.60 16 22 C -0.12 -1.55 5.18 30.59 0.16 -1.39 16 23 C -0.12 -1.43 5.92 30.60 0.18 -1.25 16 24 C -0.11 -1.11 5.92 30.59 0.18 -0.93 16 25 C -0.12 -1.56 5.92 30.59 0.18 -1.38 16 26 C -0.12 -1.69 5.20 30.60 0.16 -1.54 16 27 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.10 0.25 6.43 -2.39 -0.02 0.24 16 29 H 0.09 0.24 6.44 -2.38 -0.02 0.22 16 30 H 0.16 1.95 7.40 -2.39 -0.02 1.93 16 31 H 0.16 2.17 8.11 -2.39 -0.02 2.15 16 32 H 0.13 4.41 8.14 -2.39 -0.02 4.39 16 33 H 0.13 4.64 8.14 -2.40 -0.02 4.62 16 34 H 0.28 15.42 8.31 -92.70 -0.77 14.65 16 35 H 0.06 1.59 6.90 -2.39 -0.02 1.58 16 36 H 0.09 0.72 6.66 -2.39 -0.02 0.71 16 37 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.09 0.84 7.67 -2.39 -0.02 0.82 16 Total: -1.00 -79.24 379.54 2.55 -76.69 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 0.96 Total: 7.52 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 6.19 Total: 2.25 kcal Atomic # 7 Polarization: -96.58 SS G_CDS: -6.20 Total: -102.79 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: 0.80 Total: -19.62 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.90 Total: 46.42 kcal Atomic # 16 Polarization: -9.38 SS G_CDS: -1.10 Total: -10.47 kcal Total: -79.24 2.55 -76.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277873449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.292 kcal (2) G-P(sol) polarization free energy of solvation -79.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds