Wall clock time and date at job start Sat Apr 11 2020 05:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.46949 * 2 1 4 4 C 1.46491 * 120.00464 * 270.00073 * 3 2 1 5 5 C 1.50696 * 109.47185 * 270.00616 * 4 3 2 6 6 H 1.07995 * 120.00296 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99999 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00033 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99926 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47282 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47422 * 119.99899 * 9 7 5 12 12 H 1.48499 * 109.47227 * 240.00050 * 9 7 5 13 13 C 1.34782 * 119.99520 * 90.00120 * 3 2 1 14 14 O 1.21288 * 119.99689 * 179.97438 * 13 3 2 15 15 C 1.50693 * 120.00381 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47195 * 180.02562 * 15 13 3 17 17 C 1.39847 * 111.00130 * 180.02562 * 16 15 13 18 18 C 1.38835 * 120.07963 * 240.25410 * 17 16 15 19 19 C 1.50705 * 120.02463 * 0.04262 * 18 17 16 20 20 C 1.38144 * 119.95145 * 180.31797 * 18 17 16 21 21 N 1.48007 * 119.94806 * 179.69930 * 20 18 17 22 22 O 1.21794 * 120.00233 * 173.55703 * 21 20 18 23 23 O 1.21805 * 119.99879 * 353.55638 * 21 20 18 24 24 C 1.38272 * 120.11141 * 359.67773 * 20 18 17 25 25 C 1.38288 * 120.16299 * 0.03945 * 24 20 18 26 26 C 1.38284 * 120.04793 * 359.97438 * 25 24 20 27 27 F 1.35093 * 120.05944 * 179.97438 * 26 25 24 28 28 H 1.09002 * 109.47128 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46818 * 299.99714 * 1 2 3 30 30 H 1.08997 * 109.46995 * 59.99460 * 1 2 3 31 31 H 1.08995 * 109.46548 * 240.00263 * 2 1 3 32 32 H 1.08997 * 109.46995 * 120.00540 * 2 1 3 33 33 H 1.09001 * 109.47003 * 30.00121 * 4 3 2 34 34 H 1.08999 * 109.47383 * 149.99818 * 4 3 2 35 35 H 0.97001 * 119.99926 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.47552 * 59.99319 * 15 13 3 37 37 H 1.09007 * 109.46965 * 299.99540 * 15 13 3 38 38 H 1.00899 * 111.00065 * 303.94487 * 16 15 13 39 39 H 1.09007 * 109.46465 * 263.41664 * 19 18 17 40 40 H 1.08999 * 109.47195 * 23.41129 * 19 18 17 41 41 H 1.08991 * 109.47604 * 143.41444 * 19 18 17 42 42 H 1.08002 * 119.92008 * 180.02562 * 24 20 18 43 43 H 1.07995 * 119.97821 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2309 -1.0959 7 6 4.1490 2.3898 -2.8779 8 7 3.3487 3.1251 -3.6184 9 14 5.9134 2.0968 -3.4169 10 1 6.6014 1.2425 -2.4159 11 1 5.9214 1.4173 -4.7373 12 1 6.6204 3.3982 -3.5257 13 6 2.2429 2.0165 1.1673 14 8 2.6476 3.1599 1.1673 15 6 1.9924 1.3059 2.4723 16 7 2.3099 2.2061 3.5889 17 6 2.0887 1.5771 4.8182 18 6 1.1690 2.1050 5.7144 19 6 0.4066 3.3566 5.3631 20 6 0.9574 1.4852 6.9308 21 7 -0.0182 2.0517 7.8888 22 8 -0.2925 1.4453 8.9088 23 8 -0.5467 3.1244 7.6572 24 6 1.6552 0.3363 7.2546 25 6 2.5681 -0.1968 6.3630 26 6 2.7854 0.4183 5.1437 27 9 3.6775 -0.1020 4.2728 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.5817 1.6878 -2.0283 34 1 2.0955 3.1411 -1.1382 35 1 3.6746 3.5150 -4.4447 36 1 2.6228 0.4186 2.5299 37 1 0.9444 1.0114 2.5303 38 1 3.2579 2.5448 3.5219 39 1 0.9038 4.2206 5.8041 40 1 0.3740 3.4700 4.2795 41 1 -0.6092 3.2844 5.7515 42 1 1.4871 -0.1460 8.2062 43 1 3.1112 -1.0945 6.6188 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283685457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:21 Heat of formation + Delta-G solvation = -42.251928 kcal Electronic energy + Delta-G solvation = -29626.160786 eV Core-core repulsion = 25203.958514 eV Total energy + Delta-G solvation = -4422.202272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.76838 -42.52671 -40.22852 -39.13175 -36.93192 -36.11457 -35.27099 -33.24356 -32.86486 -31.02338 -30.18493 -28.48749 -27.52404 -26.26850 -25.72117 -23.12664 -22.81309 -22.51276 -22.11876 -19.41502 -19.05300 -18.68692 -18.07560 -17.85219 -17.35214 -16.97290 -16.50819 -16.33603 -15.94414 -15.44758 -15.07054 -14.56380 -14.46580 -14.31549 -14.03111 -13.89458 -13.59882 -13.43495 -13.28635 -12.86235 -12.67627 -12.45570 -12.25981 -12.09632 -12.01972 -11.67798 -11.60439 -11.37910 -11.26367 -10.96612 -10.85777 -10.83144 -10.62060 -10.19722 -9.76330 -9.69160 -9.55586 -9.29849 -8.84753 -8.49576 -7.76740 -6.10272 -4.15292 -0.59196 0.28671 0.87209 1.06496 2.54581 3.24568 3.25159 3.25974 3.30857 3.33459 3.37703 3.82534 3.90800 4.04186 4.28109 4.39264 4.40490 4.82285 4.88365 5.01276 5.06281 5.14372 5.14741 5.23830 5.24838 5.33433 5.47746 5.53745 5.58885 5.67683 5.75004 5.92603 5.94537 6.13943 6.26259 6.38046 6.48227 6.89376 6.99284 7.37493 7.39225 7.45420 7.85755 8.16547 8.30155 8.81955 8.97681 9.50037 10.97855 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018849 B = 0.002633 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.167205 B =10630.522278 C =10920.583237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.595 5.595 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.508 3.492 14 O -0.526 6.526 15 C 0.032 3.968 16 N -0.617 5.617 17 C 0.062 3.938 18 C 0.039 3.961 19 C -0.130 4.130 20 C -0.060 4.060 21 N 0.035 4.965 22 O -0.169 6.169 23 O -0.149 6.149 24 C -0.027 4.027 25 C -0.155 4.155 26 C 0.122 3.878 27 F -0.116 7.116 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.033 0.967 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.374 0.626 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.163 0.837 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.215 -9.252 20.271 22.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.327 5.327 4 C 0.128 3.872 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.293 3.707 14 O -0.402 6.402 15 C -0.098 4.098 16 N -0.252 5.252 17 C -0.036 4.036 18 C 0.036 3.964 19 C -0.186 4.186 20 C -0.145 4.145 21 N 0.553 4.447 22 O -0.382 6.382 23 O -0.365 6.365 24 C -0.046 4.046 25 C -0.175 4.175 26 C 0.100 3.900 27 F -0.094 7.094 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.118 0.882 38 H 0.201 0.799 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.180 0.820 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.084 -8.489 19.527 21.891 hybrid contribution 1.728 -0.963 -0.319 2.004 sum -3.356 -9.452 19.208 21.669 Atomic orbital electron populations 1.22229 0.96644 1.01493 1.02441 1.21438 0.93619 0.84203 1.02678 1.48237 1.63680 1.13209 1.07600 1.19294 0.96329 0.93689 0.77870 1.21444 0.96873 1.31993 1.06303 0.92501 1.24934 0.97862 0.94887 0.96386 1.69935 1.35601 1.33388 1.14290 0.86450 0.84599 0.78074 0.78325 1.19869 1.20933 1.20837 1.19888 0.79251 0.87017 0.84574 1.90700 1.45216 1.17505 1.86773 1.22183 1.03119 0.94668 0.89869 1.57496 1.33728 1.36616 0.97325 1.18465 0.98044 0.93197 0.93890 1.19666 0.91931 0.96154 0.88649 1.21291 1.00065 0.92146 1.05104 1.20844 1.00471 1.00473 0.92686 1.43397 1.00095 1.00331 1.00917 1.94539 1.66746 1.61522 1.15360 1.94519 1.53198 1.08519 1.80277 1.20841 0.91595 0.91623 1.00537 1.21048 1.01186 1.02794 0.92481 1.19053 0.88837 0.93738 0.88418 1.91575 1.64667 1.85552 1.67576 0.92112 0.93142 0.91802 0.89707 0.92056 0.94902 0.93757 0.92705 0.91237 0.88194 0.79928 0.88900 0.88518 0.88656 0.81988 0.82319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 37.16 0.38 -1.75 16 2 C 0.10 1.57 5.93 -4.04 -0.02 1.55 16 3 N -0.59 -11.87 2.46 -175.07 -0.43 -12.30 16 4 C 0.25 6.24 5.16 -5.20 -0.03 6.21 16 5 C -0.53 -14.55 9.39 -34.44 -0.32 -14.87 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 9 Si 0.90 21.48 29.54 -169.99 -5.02 16.45 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.51 9.83 7.71 -10.99 -0.08 9.75 16 14 O -0.53 -12.44 15.78 5.55 0.09 -12.35 16 15 C 0.03 0.44 4.39 -4.98 -0.02 0.42 16 16 N -0.62 -7.91 4.87 -59.46 -0.29 -8.20 16 17 C 0.06 0.65 5.58 -83.67 -0.47 0.19 16 18 C 0.04 0.39 5.90 -104.43 -0.62 -0.22 16 19 C -0.13 -1.33 8.50 36.01 0.31 -1.03 16 20 C -0.06 -0.58 6.83 -79.97 -0.55 -1.13 16 21 N 0.04 0.40 4.45 33.95 0.15 0.55 16 22 O -0.17 -1.98 18.46 -29.46 -0.54 -2.52 16 23 O -0.15 -1.79 15.36 -29.46 -0.45 -2.24 16 24 C -0.03 -0.19 9.55 -39.55 -0.38 -0.57 16 25 C -0.16 -1.04 10.02 -39.55 -0.40 -1.43 16 26 C 0.12 1.12 6.99 -39.25 -0.27 0.84 16 27 F -0.12 -1.20 15.09 2.25 0.03 -1.17 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.60 7.22 -51.93 -0.38 0.23 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 32 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 33 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.07 0.88 5.32 -51.93 -0.28 0.60 16 37 H 0.10 1.21 7.19 -51.92 -0.37 0.84 16 38 H 0.37 5.05 8.46 -39.29 -0.33 4.72 16 39 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 40 H 0.10 1.10 7.26 -51.93 -0.38 0.72 16 41 H 0.10 0.96 5.86 -51.93 -0.30 0.66 16 42 H 0.16 0.82 7.62 -52.49 -0.40 0.42 16 43 H 0.16 0.64 8.06 -52.49 -0.42 0.22 16 LS Contribution 369.79 15.07 5.57 5.57 Total: -1.00 -32.40 369.79 -7.96 -40.36 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.23 Total: 1.63 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -2.57 Total: -0.42 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.17 Total: -45.32 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.91 Total: -17.12 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.03 Total: -1.17 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.40 -7.96 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283685457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.893 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds