Wall clock time and date at job start Sat Apr 11 2020 05:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.46949 * 2 1 4 4 C 1.46491 * 120.00464 * 270.00073 * 3 2 1 5 5 C 1.50696 * 109.47185 * 270.00616 * 4 3 2 6 6 H 1.07995 * 120.00296 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99999 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00033 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99926 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47282 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47422 * 119.99899 * 9 7 5 12 12 H 1.48499 * 109.47227 * 240.00050 * 9 7 5 13 13 C 1.34782 * 119.99520 * 90.00120 * 3 2 1 14 14 O 1.21288 * 119.99689 * 179.97438 * 13 3 2 15 15 C 1.50693 * 120.00381 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47195 * 180.02562 * 15 13 3 17 17 C 1.39847 * 111.00130 * 180.02562 * 16 15 13 18 18 C 1.38835 * 120.07963 * 240.25410 * 17 16 15 19 19 C 1.50705 * 120.02463 * 0.04262 * 18 17 16 20 20 C 1.38144 * 119.95145 * 180.31797 * 18 17 16 21 21 N 1.48007 * 119.94806 * 179.69930 * 20 18 17 22 22 O 1.21794 * 120.00233 * 173.55703 * 21 20 18 23 23 O 1.21805 * 119.99879 * 353.55638 * 21 20 18 24 24 C 1.38272 * 120.11141 * 359.67773 * 20 18 17 25 25 C 1.38288 * 120.16299 * 0.03945 * 24 20 18 26 26 C 1.38284 * 120.04793 * 359.97438 * 25 24 20 27 27 F 1.35093 * 120.05944 * 179.97438 * 26 25 24 28 28 H 1.09002 * 109.47128 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46818 * 299.99714 * 1 2 3 30 30 H 1.08997 * 109.46995 * 59.99460 * 1 2 3 31 31 H 1.08995 * 109.46548 * 240.00263 * 2 1 3 32 32 H 1.08997 * 109.46995 * 120.00540 * 2 1 3 33 33 H 1.09001 * 109.47003 * 30.00121 * 4 3 2 34 34 H 1.08999 * 109.47383 * 149.99818 * 4 3 2 35 35 H 0.97001 * 119.99926 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.47552 * 59.99319 * 15 13 3 37 37 H 1.09007 * 109.46965 * 299.99540 * 15 13 3 38 38 H 1.00899 * 111.00065 * 303.94487 * 16 15 13 39 39 H 1.09007 * 109.46465 * 263.41664 * 19 18 17 40 40 H 1.08999 * 109.47195 * 23.41129 * 19 18 17 41 41 H 1.08991 * 109.47604 * 143.41444 * 19 18 17 42 42 H 1.08002 * 119.92008 * 180.02562 * 24 20 18 43 43 H 1.07995 * 119.97821 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2309 -1.0959 7 6 4.1490 2.3898 -2.8779 8 7 3.3487 3.1251 -3.6184 9 14 5.9134 2.0968 -3.4169 10 1 6.6014 1.2425 -2.4159 11 1 5.9214 1.4173 -4.7373 12 1 6.6204 3.3982 -3.5257 13 6 2.2429 2.0165 1.1673 14 8 2.6476 3.1599 1.1673 15 6 1.9924 1.3059 2.4723 16 7 2.3099 2.2061 3.5889 17 6 2.0887 1.5771 4.8182 18 6 1.1690 2.1050 5.7144 19 6 0.4066 3.3566 5.3631 20 6 0.9574 1.4852 6.9308 21 7 -0.0182 2.0517 7.8888 22 8 -0.2925 1.4453 8.9088 23 8 -0.5467 3.1244 7.6572 24 6 1.6552 0.3363 7.2546 25 6 2.5681 -0.1968 6.3630 26 6 2.7854 0.4183 5.1437 27 9 3.6775 -0.1020 4.2728 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.5817 1.6878 -2.0283 34 1 2.0955 3.1411 -1.1382 35 1 3.6746 3.5150 -4.4447 36 1 2.6228 0.4186 2.5299 37 1 0.9444 1.0114 2.5303 38 1 3.2579 2.5448 3.5219 39 1 0.9038 4.2206 5.8041 40 1 0.3740 3.4700 4.2795 41 1 -0.6092 3.2844 5.7515 42 1 1.4871 -0.1460 8.2062 43 1 3.1112 -1.0945 6.6188 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283685457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:20 Heat of formation + Delta-G solvation = -61.683226 kcal Electronic energy + Delta-G solvation = -29627.003390 eV Core-core repulsion = 25203.958514 eV Total energy + Delta-G solvation = -4423.044876 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.51446 -43.34260 -41.18571 -40.46255 -37.77843 -37.25915 -36.68369 -34.92512 -33.95957 -32.01320 -31.56109 -29.76918 -28.70103 -27.36842 -26.81310 -24.78613 -24.05934 -23.37324 -23.00082 -20.28910 -20.11032 -19.83770 -18.83438 -18.70955 -18.64165 -18.12876 -18.09483 -17.56729 -16.97131 -16.78228 -16.34892 -16.11252 -15.38762 -15.21505 -14.92783 -14.79494 -14.72449 -14.56867 -14.49597 -14.24772 -13.70322 -13.66680 -13.50049 -13.26687 -13.18247 -13.03867 -12.87405 -12.70147 -12.54578 -12.51508 -12.25712 -12.19088 -11.93887 -11.71122 -11.70509 -10.77030 -10.66681 -10.46205 -10.24785 -9.97702 -9.47810 -8.24143 -6.38878 -1.36929 -0.38447 0.07610 0.29190 1.35039 1.37385 1.48697 1.75319 1.85077 2.10973 2.37408 2.58696 2.71467 3.05808 3.18539 3.37276 3.51159 3.58641 3.73243 3.99803 4.08458 4.14378 4.21894 4.35490 4.39426 4.52173 4.57146 4.59449 4.65472 4.86837 4.94148 4.94885 4.96153 5.02942 5.11136 5.19719 5.34854 5.42278 5.54892 5.55629 5.82048 5.94801 6.04295 6.50525 6.67667 6.75520 7.25922 7.43064 8.83219 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018849 B = 0.002633 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.167205 B =10630.522278 C =10920.583237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.601 5.601 4 C 0.263 3.737 5 C -0.541 4.541 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.967 3.033 10 H -0.266 1.266 11 H -0.270 1.270 12 H -0.283 1.283 13 C 0.499 3.501 14 O -0.580 6.580 15 C 0.053 3.947 16 N -0.629 5.629 17 C 0.049 3.951 18 C 0.032 3.968 19 C -0.125 4.125 20 C -0.067 4.067 21 N 0.036 4.964 22 O -0.166 6.166 23 O -0.179 6.179 24 C -0.010 4.010 25 C -0.133 4.133 26 C 0.123 3.877 27 F -0.122 7.122 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.022 0.978 34 H -0.003 1.003 35 H 0.267 0.733 36 H 0.088 0.912 37 H 0.122 0.878 38 H 0.366 0.634 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.191 0.809 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.376 -12.519 22.296 25.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.333 5.333 4 C 0.142 3.858 5 C -0.579 4.579 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.190 1.190 11 H -0.195 1.195 12 H -0.209 1.209 13 C 0.287 3.713 14 O -0.460 6.460 15 C -0.077 4.077 16 N -0.262 5.262 17 C -0.049 4.049 18 C 0.029 3.971 19 C -0.181 4.181 20 C -0.152 4.152 21 N 0.550 4.450 22 O -0.381 6.381 23 O -0.389 6.389 24 C -0.029 4.029 25 C -0.153 4.153 26 C 0.100 3.900 27 F -0.100 7.100 28 H 0.114 0.886 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.040 0.960 34 H 0.015 0.985 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.140 0.860 38 H 0.192 0.808 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.208 0.792 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -4.292 -11.765 21.560 24.933 hybrid contribution 1.453 0.002 -0.880 1.699 sum -2.839 -11.764 20.680 23.960 Atomic orbital electron populations 1.22164 0.94555 1.03557 1.01729 1.21760 0.95320 0.81353 1.03943 1.48244 1.63856 1.15051 1.06156 1.18705 0.95319 0.91549 0.80241 1.21719 0.97812 1.31919 1.06474 0.92798 1.25855 1.02327 0.94497 0.96484 1.70056 1.37702 1.34268 1.14797 0.85374 0.79074 0.77972 0.78413 1.19020 1.19503 1.20871 1.20880 0.77745 0.86606 0.86105 1.90666 1.47490 1.20074 1.87736 1.22005 1.04705 0.94190 0.86781 1.57345 1.33425 1.37262 0.98188 1.18324 0.99243 0.94237 0.93079 1.19572 0.92174 0.96127 0.89183 1.21182 1.00277 0.92745 1.03922 1.20955 1.00720 1.01401 0.92125 1.43630 1.00178 1.00157 1.01037 1.94515 1.66657 1.61256 1.15714 1.94530 1.54377 1.09294 1.80721 1.21221 0.90116 0.90104 1.01456 1.21385 1.00139 1.03099 0.90650 1.19121 0.88395 0.93270 0.89175 1.91564 1.64890 1.85526 1.68027 0.88563 0.92286 0.94126 0.90699 0.88476 0.95987 0.98467 0.92415 0.89387 0.85976 0.80784 0.89070 0.90074 0.88704 0.79231 0.78651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 10.24 71.98 0.74 -3.05 16 2 C 0.10 2.83 5.93 86.38 0.51 3.34 16 3 N -0.60 -24.46 2.46 -826.18 -2.03 -26.49 16 4 C 0.26 13.97 5.16 85.63 0.44 14.41 16 5 C -0.54 -30.66 9.39 25.60 0.24 -30.42 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.42 5.46 84.66 0.46 0.88 16 8 N -0.93 -55.87 13.29 21.45 0.28 -55.58 16 9 Si 0.97 44.40 29.54 68.60 2.03 46.42 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 C 0.50 19.69 7.71 87.65 0.68 20.37 16 14 O -0.58 -28.87 15.78 -3.06 -0.05 -28.92 16 15 C 0.05 1.39 4.39 85.56 0.38 1.77 16 16 N -0.63 -15.88 4.87 -342.03 -1.67 -17.54 16 17 C 0.05 0.95 5.58 38.21 0.21 1.16 16 18 C 0.03 0.61 5.90 -19.74 -0.12 0.50 16 19 C -0.13 -2.62 8.50 71.24 0.61 -2.02 16 20 C -0.07 -1.14 6.83 36.36 0.25 -0.89 16 21 N 0.04 0.76 4.45 -46.50 -0.21 0.55 16 22 O -0.17 -3.54 18.46 18.89 0.35 -3.19 16 23 O -0.18 -4.29 15.36 18.88 0.29 -4.00 16 24 C -0.01 -0.10 9.55 22.29 0.21 0.11 16 25 C -0.13 -1.14 10.02 22.29 0.22 -0.92 16 26 C 0.12 1.84 6.99 22.48 0.16 2.00 16 27 F -0.12 -2.14 15.09 44.97 0.68 -1.46 16 28 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.06 1.28 7.22 -2.39 -0.02 1.26 16 30 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 32 H 0.10 2.10 6.44 -2.39 -0.02 2.08 16 33 H 0.02 1.20 8.07 -2.39 -0.02 1.18 16 34 H 0.00 -0.17 7.42 -2.39 -0.02 -0.19 16 35 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 36 H 0.09 1.99 5.32 -2.39 -0.01 1.98 16 37 H 0.12 2.66 7.19 -2.38 -0.02 2.64 16 38 H 0.37 10.05 8.46 -89.69 -0.76 9.30 16 39 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 40 H 0.08 1.93 7.26 -2.39 -0.02 1.92 16 41 H 0.09 1.97 5.86 -2.39 -0.01 1.96 16 42 H 0.19 0.93 7.62 -2.91 -0.02 0.91 16 43 H 0.20 0.33 8.06 -2.91 -0.02 0.31 16 Total: -1.00 -74.84 369.79 4.98 -69.86 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.31 Total: 13.11 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 4.99 Total: 7.24 kcal Atomic # 7 Polarization: -95.45 SS G_CDS: -3.62 Total: -99.07 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: 0.59 Total: -36.11 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.68 Total: -1.46 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -74.84 4.98 -69.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283685457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.178 kcal (2) G-P(sol) polarization free energy of solvation -74.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds