Wall clock time and date at job start Sat Apr 11 2020 05:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 119.99592 * 2 1 4 4 C 1.38995 * 120.00254 * 180.02562 * 2 1 3 5 5 C 1.39136 * 119.70825 * 4.99482 * 4 2 1 6 6 C 1.38302 * 119.09918 * 180.02562 * 5 4 2 7 7 C 1.38891 * 118.50436 * 0.02562 * 6 5 4 8 8 S 1.76199 * 120.33381 * 179.97438 * 7 6 5 9 9 O 1.42096 * 106.39857 * 203.53541 * 8 7 6 10 10 O 1.42110 * 106.40085 * 336.45348 * 8 7 6 11 11 N 1.65596 * 107.21898 * 89.99309 * 8 7 6 12 12 C 1.36937 * 119.99728 * 90.00136 * 11 8 7 13 13 H 1.07999 * 119.99975 * 227.70157 * 12 11 8 14 14 C 1.38812 * 119.99989 * 47.70419 * 12 11 8 15 15 N 1.31617 * 120.00240 * 24.73801 * 14 12 11 16 16 Si 1.86803 * 119.99829 * 204.72970 * 14 12 11 17 17 H 1.48498 * 109.47283 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46511 * 120.00379 * 16 14 12 19 19 H 1.48498 * 109.47444 * 240.00139 * 16 14 12 20 20 C 1.46500 * 120.00060 * 269.99831 * 11 8 7 21 21 C 1.54265 * 110.03286 * 241.41910 * 20 11 8 22 22 C 1.54966 * 104.16346 * 217.13757 * 21 20 11 23 23 C 1.54897 * 102.77387 * 37.88797 * 22 21 20 24 24 C 1.53873 * 110.03187 * 124.20264 * 20 11 8 25 25 C 1.38017 * 119.32609 * 359.97133 * 7 6 5 26 26 N 1.31974 * 120.86474 * 0.02996 * 25 7 6 27 27 H 1.09006 * 109.47211 * 269.99312 * 1 2 3 28 28 H 1.09001 * 109.47330 * 29.99899 * 1 2 3 29 29 H 1.09003 * 109.46992 * 150.00049 * 1 2 3 30 30 H 1.08997 * 109.47316 * 270.00036 * 3 2 1 31 31 H 1.08995 * 109.46879 * 30.00669 * 3 2 1 32 32 H 1.09001 * 109.46569 * 150.00290 * 3 2 1 33 33 H 1.08001 * 120.45246 * 0.02562 * 5 4 2 34 34 H 1.07994 * 120.75018 * 179.72437 * 6 5 4 35 35 H 0.96994 * 120.00377 * 174.84168 * 15 14 12 36 36 H 1.09002 * 110.01669 * 2.81248 * 20 11 8 37 37 H 1.09007 * 110.48782 * 335.78417 * 21 20 11 38 38 H 1.08998 * 110.48821 * 98.42619 * 21 20 11 39 39 H 1.09001 * 110.72084 * 279.58008 * 22 21 20 40 40 H 1.08991 * 110.92642 * 156.29636 * 22 21 20 41 41 H 1.09004 * 110.48399 * 203.40834 * 23 22 21 42 42 H 1.08996 * 110.59626 * 80.81844 * 23 22 21 43 43 H 1.08996 * 110.03304 * 238.56959 * 24 20 11 44 44 H 1.08999 * 110.03444 * 359.95066 * 24 20 11 45 45 H 1.08008 * 119.56547 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1600 -1.2037 -0.0005 5 6 1.4622 -2.4028 -0.1063 6 6 2.1664 -3.5931 -0.1050 7 6 3.5502 -3.5445 0.0030 8 16 4.4951 -5.0317 0.0102 9 8 5.7193 -4.7260 0.6636 10 8 3.6181 -6.0621 0.4448 11 7 4.8783 -5.3767 -1.5634 12 6 6.0337 -4.8855 -2.1102 13 1 6.0121 -4.4069 -3.0781 14 6 7.2325 -5.0027 -1.4204 15 7 7.3882 -5.9585 -0.5290 16 14 8.6251 -3.8042 -1.7576 17 1 8.2003 -2.8310 -2.7957 18 1 8.9659 -3.0774 -0.5082 19 1 9.8161 -4.5510 -2.2363 20 6 3.9813 -6.2074 -2.3706 21 6 4.7113 -7.4894 -2.8216 22 6 4.1854 -7.7399 -4.2576 23 6 4.0767 -6.3076 -4.8373 24 6 3.5775 -5.4565 -3.6514 25 6 4.1777 -2.3194 0.1044 26 7 3.4802 -1.1990 0.1006 27 1 -0.3634 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 2.3791 1.5835 -1.0276 31 1 1.6083 2.0283 0.5139 32 1 3.1498 1.1385 0.5138 33 1 0.3853 -2.4040 -0.1883 34 1 1.6515 -4.5393 -0.1813 35 1 8.2492 -6.0874 -0.1014 36 1 3.0932 -6.4667 -1.7940 37 1 5.7897 -7.3304 -2.8328 38 1 4.4546 -8.3241 -2.1695 39 1 3.2078 -8.2213 -4.2318 40 1 4.8931 -8.3367 -4.8328 41 1 3.3571 -6.2809 -5.6557 42 1 5.0513 -5.9559 -5.1757 43 1 2.4935 -5.3520 -3.6970 44 1 4.0482 -4.4736 -3.6721 45 1 5.2537 -2.2770 0.1881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284008526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:23 Heat of formation + Delta-G solvation = -14.259555 kcal Electronic energy + Delta-G solvation = -28971.458114 eV Core-core repulsion = 25116.682858 eV Total energy + Delta-G solvation = -3854.775255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.84627 -37.82849 -36.37176 -35.57017 -34.13516 -33.78606 -32.09854 -31.32910 -30.13008 -28.26220 -27.93934 -26.84405 -25.22058 -24.12820 -22.91004 -21.39932 -19.99168 -19.39351 -18.77120 -17.68068 -16.94020 -16.37367 -15.88381 -15.67493 -15.28438 -15.08376 -14.63185 -14.44744 -14.28873 -14.19042 -13.50016 -13.17696 -12.97860 -12.79750 -12.68742 -12.62929 -12.36735 -12.19219 -11.99384 -11.85275 -11.69580 -11.31841 -11.06839 -10.69712 -10.49333 -10.35551 -10.34300 -10.30251 -10.26353 -10.01411 -9.96708 -9.87378 -9.83192 -9.55268 -9.37155 -8.95918 -8.64602 -7.63164 -7.47908 -6.47590 -4.04513 1.48785 1.74478 2.12713 2.96316 3.23589 3.32812 3.36602 4.11691 4.20843 4.70839 4.78801 4.97160 4.97515 5.12129 5.20760 5.30485 5.33946 5.36165 5.38489 5.49673 5.52750 5.57604 5.59055 5.66913 5.87401 5.96880 6.04999 6.22362 6.24182 6.24903 6.28687 6.32566 6.39885 6.47588 6.53658 6.63543 6.73231 6.84768 6.90615 7.00552 7.02338 7.25556 7.47810 7.48142 7.67723 8.29013 8.40387 8.96775 9.40792 10.58546 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011448 B = 0.004955 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.153998 B = 5649.883518 C = 6580.219471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.622 5.622 3 C 0.100 3.900 4 C 0.418 3.582 5 C -0.265 4.265 6 C 0.045 3.955 7 C -0.765 4.765 8 S 2.564 3.436 9 O -0.945 6.945 10 O -1.017 7.017 11 N -0.809 5.809 12 C -0.276 4.276 13 H 0.083 0.917 14 C 0.061 3.939 15 N -0.770 5.770 16 Si 0.913 3.087 17 H -0.265 1.265 18 H -0.273 1.273 19 H -0.281 1.281 20 C 0.157 3.843 21 C -0.119 4.119 22 C -0.123 4.123 23 C -0.115 4.115 24 C -0.135 4.135 25 C 0.240 3.760 26 N -0.558 5.558 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.129 0.871 34 H 0.137 0.863 35 H 0.278 0.722 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.066 0.934 43 H 0.050 0.950 44 H 0.076 0.924 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.701 6.717 -4.454 12.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.336 5.336 3 C -0.043 4.043 4 C 0.184 3.816 5 C -0.290 4.290 6 C 0.019 3.981 7 C -0.845 4.845 8 S 2.662 3.338 9 O -0.933 6.933 10 O -1.007 7.007 11 N -0.632 5.632 12 C -0.424 4.424 13 H 0.100 0.900 14 C -0.157 4.157 15 N -0.405 5.405 16 Si 0.738 3.262 17 H -0.189 1.189 18 H -0.199 1.199 19 H -0.207 1.207 20 C 0.049 3.951 21 C -0.159 4.159 22 C -0.162 4.162 23 C -0.153 4.153 24 C -0.175 4.175 25 C 0.082 3.918 26 N -0.276 5.276 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.147 0.853 34 H 0.155 0.845 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -9.346 7.270 -3.226 12.272 hybrid contribution -0.287 0.512 -0.272 0.647 sum -9.633 7.781 -3.498 12.868 Atomic orbital electron populations 1.21675 0.78813 1.02881 1.01346 1.46217 1.04955 1.03243 1.79225 1.21539 0.97800 0.83855 1.01150 1.18443 0.88931 0.85492 0.88740 1.21394 1.00474 0.92311 1.14798 1.20990 0.92484 0.97751 0.86915 1.33261 1.08035 1.24849 1.18355 1.10620 0.72545 0.73560 0.77089 1.93429 1.41110 1.84138 1.74655 1.93289 1.68442 1.56475 1.82478 1.52943 1.24855 1.53978 1.31472 1.18939 0.82499 1.35968 1.04980 0.89967 1.25633 0.98971 0.95592 0.95546 1.69817 1.25032 1.24935 1.20765 0.86110 0.80272 0.80977 0.78811 1.18935 1.19855 1.20658 1.21292 0.92117 0.90162 0.91554 1.22633 1.02956 0.96265 0.94001 1.22468 0.99986 0.96472 0.97232 1.22238 1.00697 0.95507 0.96881 1.22539 0.99105 1.00509 0.95305 1.22164 0.99473 0.85367 0.84840 1.67222 1.05886 1.32336 1.22145 0.93181 0.91246 0.90994 0.93608 0.92215 0.90083 0.85319 0.84532 0.91105 0.90782 0.88760 0.92653 0.92569 0.92335 0.93153 0.91525 0.93162 0.90565 0.81597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.91 10.28 59.84 0.62 1.52 16 2 N -0.62 -8.46 3.39 -189.66 -0.64 -9.10 16 3 C 0.10 1.16 10.50 59.85 0.63 1.79 16 4 C 0.42 7.27 7.37 -155.02 -1.14 6.12 16 5 C -0.26 -4.42 9.27 -39.22 -0.36 -4.78 16 6 C 0.05 0.86 9.64 -39.32 -0.38 0.48 16 7 C -0.76 -16.53 5.99 -39.42 -0.24 -16.77 16 8 S 2.56 63.31 5.44 -107.50 -0.58 62.73 16 9 O -0.95 -26.01 13.20 -57.17 -0.75 -26.77 16 10 O -1.02 -26.76 15.97 -57.17 -0.91 -27.67 16 11 N -0.81 -18.71 2.67 -52.34 -0.14 -18.85 16 12 C -0.28 -6.55 7.54 -15.06 -0.11 -6.66 16 13 H 0.08 1.86 7.02 -52.49 -0.37 1.49 16 14 C 0.06 1.51 4.03 -17.43 -0.07 1.44 16 15 N -0.77 -20.49 11.40 55.49 0.63 -19.85 16 16 Si 0.91 19.56 29.62 -169.99 -5.04 14.53 16 17 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 20 C 0.16 3.17 3.26 -66.81 -0.22 2.95 16 21 C -0.12 -2.28 6.42 -25.03 -0.16 -2.44 16 22 C -0.12 -1.88 6.91 -24.69 -0.17 -2.06 16 23 C -0.12 -1.75 6.83 -25.07 -0.17 -1.92 16 24 C -0.14 -2.33 6.21 -25.61 -0.16 -2.48 16 25 C 0.24 5.08 10.67 -17.57 -0.19 4.89 16 26 N -0.56 -10.94 9.08 -12.44 -0.11 -11.05 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 29 H 0.07 0.65 5.98 -51.93 -0.31 0.34 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.52 8.07 -51.93 -0.42 0.10 16 32 H 0.08 1.08 7.30 -51.93 -0.38 0.70 16 33 H 0.13 1.69 6.03 -52.49 -0.32 1.37 16 34 H 0.14 2.41 7.70 -52.49 -0.40 2.01 16 35 H 0.28 7.03 8.32 -40.82 -0.34 6.69 16 36 H 0.07 1.50 7.01 -51.93 -0.36 1.13 16 37 H 0.09 2.03 7.18 -51.93 -0.37 1.66 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.40 6.71 -51.93 -0.35 1.05 16 45 H 0.17 3.50 7.62 -52.48 -0.40 3.10 16 LS Contribution 369.15 15.07 5.56 5.56 Total: -1.00 -31.45 369.15 -10.73 -42.18 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.62 Total: 6.22 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -2.13 Total: -17.92 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: -0.26 Total: -58.86 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -1.67 Total: -54.44 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.04 Total: 14.53 kcal Atomic # 16 Polarization: 63.31 SS G_CDS: -0.58 Total: 62.73 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.45 -10.73 -42.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284008526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.922 kcal (2) G-P(sol) polarization free energy of solvation -31.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds