Wall clock time and date at job start Sat Apr 11 2020 05:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 119.99592 * 2 1 4 4 C 1.38995 * 120.00254 * 180.02562 * 2 1 3 5 5 C 1.39136 * 119.70825 * 4.99482 * 4 2 1 6 6 C 1.38302 * 119.09918 * 180.02562 * 5 4 2 7 7 C 1.38891 * 118.50436 * 0.02562 * 6 5 4 8 8 S 1.76199 * 120.33381 * 179.97438 * 7 6 5 9 9 O 1.42096 * 106.39857 * 203.53541 * 8 7 6 10 10 O 1.42110 * 106.40085 * 336.45348 * 8 7 6 11 11 N 1.65596 * 107.21898 * 89.99309 * 8 7 6 12 12 C 1.36937 * 119.99728 * 90.00136 * 11 8 7 13 13 H 1.07999 * 119.99975 * 227.70157 * 12 11 8 14 14 C 1.38812 * 119.99989 * 47.70419 * 12 11 8 15 15 N 1.31617 * 120.00240 * 24.73801 * 14 12 11 16 16 Si 1.86803 * 119.99829 * 204.72970 * 14 12 11 17 17 H 1.48498 * 109.47283 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46511 * 120.00379 * 16 14 12 19 19 H 1.48498 * 109.47444 * 240.00139 * 16 14 12 20 20 C 1.46500 * 120.00060 * 269.99831 * 11 8 7 21 21 C 1.54265 * 110.03286 * 241.41910 * 20 11 8 22 22 C 1.54966 * 104.16346 * 217.13757 * 21 20 11 23 23 C 1.54897 * 102.77387 * 37.88797 * 22 21 20 24 24 C 1.53873 * 110.03187 * 124.20264 * 20 11 8 25 25 C 1.38017 * 119.32609 * 359.97133 * 7 6 5 26 26 N 1.31974 * 120.86474 * 0.02996 * 25 7 6 27 27 H 1.09006 * 109.47211 * 269.99312 * 1 2 3 28 28 H 1.09001 * 109.47330 * 29.99899 * 1 2 3 29 29 H 1.09003 * 109.46992 * 150.00049 * 1 2 3 30 30 H 1.08997 * 109.47316 * 270.00036 * 3 2 1 31 31 H 1.08995 * 109.46879 * 30.00669 * 3 2 1 32 32 H 1.09001 * 109.46569 * 150.00290 * 3 2 1 33 33 H 1.08001 * 120.45246 * 0.02562 * 5 4 2 34 34 H 1.07994 * 120.75018 * 179.72437 * 6 5 4 35 35 H 0.96994 * 120.00377 * 174.84168 * 15 14 12 36 36 H 1.09002 * 110.01669 * 2.81248 * 20 11 8 37 37 H 1.09007 * 110.48782 * 335.78417 * 21 20 11 38 38 H 1.08998 * 110.48821 * 98.42619 * 21 20 11 39 39 H 1.09001 * 110.72084 * 279.58008 * 22 21 20 40 40 H 1.08991 * 110.92642 * 156.29636 * 22 21 20 41 41 H 1.09004 * 110.48399 * 203.40834 * 23 22 21 42 42 H 1.08996 * 110.59626 * 80.81844 * 23 22 21 43 43 H 1.08996 * 110.03304 * 238.56959 * 24 20 11 44 44 H 1.08999 * 110.03444 * 359.95066 * 24 20 11 45 45 H 1.08008 * 119.56547 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1600 -1.2037 -0.0005 5 6 1.4622 -2.4028 -0.1063 6 6 2.1664 -3.5931 -0.1050 7 6 3.5502 -3.5445 0.0030 8 16 4.4951 -5.0317 0.0102 9 8 5.7193 -4.7260 0.6636 10 8 3.6181 -6.0621 0.4448 11 7 4.8783 -5.3767 -1.5634 12 6 6.0337 -4.8855 -2.1102 13 1 6.0121 -4.4069 -3.0781 14 6 7.2325 -5.0027 -1.4204 15 7 7.3882 -5.9585 -0.5290 16 14 8.6251 -3.8042 -1.7576 17 1 8.2003 -2.8310 -2.7957 18 1 8.9659 -3.0774 -0.5082 19 1 9.8161 -4.5510 -2.2363 20 6 3.9813 -6.2074 -2.3706 21 6 4.7113 -7.4894 -2.8216 22 6 4.1854 -7.7399 -4.2576 23 6 4.0767 -6.3076 -4.8373 24 6 3.5775 -5.4565 -3.6514 25 6 4.1777 -2.3194 0.1044 26 7 3.4802 -1.1990 0.1006 27 1 -0.3634 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 2.3791 1.5835 -1.0276 31 1 1.6083 2.0283 0.5139 32 1 3.1498 1.1385 0.5138 33 1 0.3853 -2.4040 -0.1883 34 1 1.6515 -4.5393 -0.1813 35 1 8.2492 -6.0874 -0.1014 36 1 3.0932 -6.4667 -1.7940 37 1 5.7897 -7.3304 -2.8328 38 1 4.4546 -8.3241 -2.1695 39 1 3.2078 -8.2213 -4.2318 40 1 4.8931 -8.3367 -4.8328 41 1 3.3571 -6.2809 -5.6557 42 1 5.0513 -5.9559 -5.1757 43 1 2.4935 -5.3520 -3.6970 44 1 4.0482 -4.4736 -3.6721 45 1 5.2537 -2.2770 0.1881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284008526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:22 Heat of formation + Delta-G solvation = -33.764205 kcal Electronic energy + Delta-G solvation = -28972.303899 eV Core-core repulsion = 25116.682858 eV Total energy + Delta-G solvation = -3855.621040 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.23230 -39.33886 -37.57627 -37.51972 -36.06141 -35.58221 -33.54176 -33.11563 -31.50586 -29.33265 -29.15315 -28.42079 -26.41031 -25.89547 -24.35463 -22.68338 -21.31080 -21.00454 -20.56418 -19.22434 -18.45757 -17.77829 -17.56771 -17.35386 -16.91255 -16.32972 -16.11261 -15.88259 -15.77303 -15.44401 -15.13449 -14.52769 -14.47508 -14.30385 -14.06982 -13.98007 -13.66095 -13.43881 -13.38874 -13.07263 -13.00459 -12.86675 -12.85306 -12.38879 -12.33343 -12.14102 -11.98060 -11.79802 -11.70386 -11.68049 -11.50697 -11.34556 -11.24109 -11.15128 -10.77270 -10.57266 -10.41628 -9.39893 -8.73230 -8.35559 -5.94595 -0.03885 0.25690 0.31344 1.49670 1.57262 1.65166 1.88841 2.38322 2.63834 3.02898 3.11126 3.44454 3.59807 3.84761 3.87417 3.98276 4.01771 4.11780 4.24709 4.31458 4.38000 4.41227 4.49582 4.64739 4.74349 4.74942 4.80186 4.81011 4.89965 4.90878 4.92485 4.94980 5.03880 5.08594 5.21565 5.22516 5.32350 5.45748 5.47329 5.54821 5.64600 5.75985 5.91564 6.03433 6.21787 6.40302 6.98171 7.12496 7.56588 8.71499 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011448 B = 0.004955 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.153998 B = 5649.883518 C = 6580.219471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.616 5.616 3 C 0.094 3.906 4 C 0.412 3.588 5 C -0.252 4.252 6 C 0.034 3.966 7 C -0.786 4.786 8 S 2.569 3.431 9 O -0.985 6.985 10 O -1.044 7.044 11 N -0.817 5.817 12 C -0.274 4.274 13 H 0.093 0.907 14 C 0.022 3.978 15 N -0.813 5.813 16 Si 0.962 3.038 17 H -0.247 1.247 18 H -0.291 1.291 19 H -0.269 1.269 20 C 0.144 3.856 21 C -0.123 4.123 22 C -0.112 4.112 23 C -0.110 4.110 24 C -0.129 4.129 25 C 0.230 3.770 26 N -0.571 5.571 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.171 0.829 34 H 0.146 0.854 35 H 0.275 0.725 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.044 0.956 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.622 8.714 -6.551 16.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.328 5.328 3 C -0.049 4.049 4 C 0.175 3.825 5 C -0.276 4.276 6 C 0.008 3.992 7 C -0.872 4.872 8 S 2.671 3.329 9 O -0.973 6.973 10 O -1.034 7.034 11 N -0.641 5.641 12 C -0.421 4.421 13 H 0.110 0.890 14 C -0.193 4.193 15 N -0.450 5.450 16 Si 0.785 3.215 17 H -0.170 1.170 18 H -0.217 1.217 19 H -0.194 1.194 20 C 0.037 3.963 21 C -0.162 4.162 22 C -0.150 4.150 23 C -0.147 4.147 24 C -0.169 4.169 25 C 0.071 3.929 26 N -0.290 5.290 27 H 0.082 0.918 28 H 0.117 0.883 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.189 0.811 34 H 0.164 0.836 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.285 9.262 -5.361 16.292 hybrid contribution 0.394 0.073 0.440 0.595 sum -11.891 9.334 -4.921 15.898 Atomic orbital electron populations 1.22038 0.75928 1.04823 1.02828 1.46656 1.06735 1.02418 1.76986 1.21700 0.97506 0.83790 1.01858 1.18882 0.88445 0.87474 0.87676 1.21748 1.02366 0.90903 1.12602 1.21176 0.91494 0.99357 0.87159 1.32660 1.09234 1.23251 1.22009 1.09891 0.71943 0.73780 0.77244 1.93373 1.43174 1.84944 1.75820 1.93233 1.68864 1.58064 1.83190 1.52870 1.25443 1.54748 1.31085 1.19158 0.82519 1.35373 1.05058 0.88952 1.26406 1.01174 0.96381 0.95331 1.69906 1.25413 1.26985 1.22715 0.85360 0.78368 0.79510 0.78251 1.16998 1.21704 1.19406 1.21598 0.91480 0.90678 0.92532 1.22601 1.01130 0.95610 0.96898 1.22431 1.01201 0.97180 0.94173 1.22226 1.01201 0.94506 0.96797 1.22479 1.00415 0.99599 0.94380 1.21970 0.99207 0.85954 0.85766 1.67228 1.07344 1.31345 1.23115 0.91812 0.88270 0.90190 0.92853 0.88653 0.92288 0.81134 0.83634 0.91497 0.91395 0.91741 0.93706 0.90476 0.90860 0.89925 0.92201 0.90930 0.91983 0.83072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.19 10.28 127.77 1.31 2.50 16 2 N -0.62 -14.56 3.39 -753.97 -2.56 -17.12 16 3 C 0.09 1.90 10.50 127.77 1.34 3.24 16 4 C 0.41 13.43 7.37 133.07 0.98 14.41 16 5 C -0.25 -7.73 9.27 22.50 0.21 -7.52 16 6 C 0.03 1.29 9.64 22.44 0.22 1.50 16 7 C -0.79 -34.83 5.99 22.37 0.13 -34.70 16 8 S 2.57 132.97 5.44 -56.49 -0.31 132.66 16 9 O -0.98 -57.55 13.20 -128.00 -1.69 -59.24 16 10 O -1.04 -57.34 15.97 -128.00 -2.04 -59.38 16 11 N -0.82 -39.16 2.67 -319.51 -0.85 -40.02 16 12 C -0.27 -13.38 7.54 84.03 0.63 -12.75 16 13 H 0.09 4.23 7.02 -2.91 -0.02 4.21 16 14 C 0.02 1.11 4.03 84.86 0.34 1.45 16 15 N -0.81 -45.67 11.40 21.65 0.25 -45.42 16 16 Si 0.96 41.14 29.62 68.60 2.03 43.17 16 17 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 18 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 19 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 20 C 0.14 5.90 3.26 45.71 0.15 6.05 16 21 C -0.12 -4.79 6.42 31.70 0.20 -4.58 16 22 C -0.11 -3.19 6.91 31.91 0.22 -2.97 16 23 C -0.11 -3.04 6.83 31.67 0.22 -2.82 16 24 C -0.13 -4.27 6.21 31.32 0.19 -4.07 16 25 C 0.23 10.04 10.67 84.62 0.90 10.95 16 26 N -0.57 -22.25 9.08 -193.26 -1.75 -24.00 16 27 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.10 0.86 8.07 -2.39 -0.02 0.84 16 29 H 0.08 1.02 5.98 -2.39 -0.01 1.00 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 1.26 8.07 -2.39 -0.02 1.24 16 32 H 0.06 1.48 7.30 -2.39 -0.02 1.46 16 33 H 0.17 3.69 6.03 -2.91 -0.02 3.67 16 34 H 0.15 5.05 7.70 -2.91 -0.02 5.03 16 35 H 0.28 14.78 8.32 -92.71 -0.77 14.01 16 36 H 0.07 2.81 7.01 -2.39 -0.02 2.79 16 37 H 0.06 2.89 7.18 -2.38 -0.02 2.87 16 38 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 42 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.06 2.22 6.71 -2.39 -0.02 2.21 16 45 H 0.15 6.83 7.62 -2.91 -0.02 6.81 16 Total: -1.00 -72.48 369.15 1.12 -71.35 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.99 Total: 27.30 kcal Atomic # 6 Polarization: -36.36 SS G_CDS: 7.06 Total: -29.30 kcal Atomic # 7 Polarization: -121.64 SS G_CDS: -4.92 Total: -126.56 kcal Atomic # 8 Polarization: -114.89 SS G_CDS: -3.73 Total: -118.63 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 16 Polarization: 132.97 SS G_CDS: -0.31 Total: 132.66 kcal Total: -72.48 1.12 -71.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284008526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.591 kcal (2) G-P(sol) polarization free energy of solvation -72.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds