Wall clock time and date at job start Sat Apr 11 2020 05:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37806 * 118.95541 * 2 1 4 4 C 1.47456 * 118.97272 * 0.02562 * 3 2 1 5 5 O 1.21602 * 120.00077 * 271.56615 * 4 3 2 6 6 N 1.34776 * 120.00100 * 91.56085 * 4 3 2 7 7 C 1.46498 * 120.00243 * 184.98775 * 6 4 3 8 8 C 1.50696 * 109.47118 * 90.00043 * 7 6 4 9 9 H 1.08002 * 120.00142 * 359.97438 * 8 7 6 10 10 C 1.37883 * 119.99946 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99607 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00064 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47274 * 59.99978 * 12 10 8 14 14 H 1.48502 * 109.47069 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47312 * 299.99805 * 12 10 8 16 16 C 1.46497 * 119.99621 * 4.98417 * 6 4 3 17 17 C 1.53008 * 109.47190 * 87.01529 * 16 6 4 18 18 C 1.47197 * 109.47402 * 179.97438 * 17 16 6 19 19 N 5.90625 * 113.35056 * 66.62922 * 2 1 3 20 20 C 1.35621 * 122.05777 * 180.02562 * 3 2 1 21 21 C 1.46289 * 119.40788 * 359.97438 * 20 3 2 22 22 C 1.39603 * 121.78960 * 180.02562 * 21 20 3 23 23 C 1.37793 * 119.54072 * 179.97438 * 22 21 20 24 24 C 1.38831 * 120.69613 * 0.02562 * 23 22 21 25 25 C 1.37881 * 120.73781 * 359.97438 * 24 23 22 26 26 C 1.39291 * 119.59627 * 0.02562 * 25 24 23 27 27 C 1.34745 * 118.95616 * 179.97438 * 2 1 3 28 28 O 1.21748 * 120.28366 * 0.02835 * 27 2 1 29 29 H 1.08998 * 109.47117 * 94.37912 * 1 2 3 30 30 H 1.09003 * 109.46606 * 214.37478 * 1 2 3 31 31 H 1.08999 * 109.47180 * 334.37360 * 1 2 3 32 32 H 1.09004 * 109.47181 * 210.00348 * 7 6 4 33 33 H 1.09003 * 109.47167 * 329.99846 * 7 6 4 34 34 H 0.97006 * 119.99353 * 180.02562 * 11 10 8 35 35 H 1.09004 * 109.47495 * 207.01387 * 16 6 4 36 36 H 1.08997 * 109.47757 * 327.01760 * 16 6 4 37 37 H 1.08996 * 109.46929 * 300.00566 * 17 16 6 38 38 H 1.09005 * 109.46421 * 59.99796 * 17 16 6 39 39 H 1.08005 * 120.29920 * 180.02562 * 20 3 2 40 40 H 1.07995 * 120.23133 * 0.02562 * 22 21 20 41 41 H 1.07997 * 119.65006 * 180.02562 * 23 22 21 42 42 H 1.08005 * 119.63161 * 180.27857 * 24 23 22 43 43 H 1.07998 * 120.20457 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1321 1.2058 0.0000 4 6 1.3491 2.4553 0.0006 5 8 1.0015 2.9555 -1.0519 6 7 1.0187 3.0430 1.1676 7 6 0.1497 4.2224 1.1736 8 6 -1.2890 3.7857 1.2763 9 1 -1.5318 2.7347 1.3311 10 6 -2.2955 4.7278 1.2992 11 7 -1.9998 6.0076 1.2319 12 14 -4.0788 4.1866 1.4257 13 1 -4.2757 3.4207 2.6826 14 1 -4.9597 5.3821 1.4319 15 1 -4.4188 3.3267 0.2636 16 6 1.5286 2.5023 2.4301 17 6 2.8991 3.1130 2.7300 18 6 3.4111 2.5702 3.9988 19 7 3.8059 2.1510 4.9776 20 6 3.4863 1.2792 -0.0005 21 6 4.2726 0.0455 -0.0005 22 6 5.6685 0.0631 -0.0005 23 6 6.3629 -1.1271 0.0000 24 6 5.6889 -2.3408 0.0000 25 6 4.3107 -2.3816 0.0000 26 6 3.5872 -1.1913 -0.0005 27 6 2.1173 -1.1790 0.0005 28 8 1.4946 -2.2252 0.0005 29 1 -0.3633 -0.0785 -1.0246 30 1 -0.3633 -0.8482 0.5803 31 1 -0.3633 0.9266 0.4445 32 1 0.3996 4.8535 2.0265 33 1 0.2938 4.7846 0.2510 34 1 -2.7079 6.6704 1.2484 35 1 0.8372 2.7479 3.2362 36 1 1.6231 1.4194 2.3498 37 1 3.5904 2.8675 1.9239 38 1 2.8045 4.1959 2.8102 39 1 3.9800 2.2398 -0.0001 40 1 6.2005 1.0029 -0.0001 41 1 7.4428 -1.1155 0.0005 42 1 6.2504 -3.2634 0.0050 43 1 3.7952 -3.3306 0.0004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285109744.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:25 Heat of formation + Delta-G solvation = -10.835689 kcal Electronic energy + Delta-G solvation = -29369.310841 eV Core-core repulsion = 25379.240105 eV Total energy + Delta-G solvation = -3990.070737 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.54190 -40.81214 -39.37601 -38.08707 -37.72494 -36.82731 -34.87336 -34.08341 -32.31654 -32.25391 -31.07003 -29.14145 -28.45578 -26.04403 -25.43855 -24.56235 -24.11747 -22.78701 -21.03972 -19.56520 -19.07693 -18.63670 -18.42718 -18.21867 -17.78319 -17.02786 -16.95869 -16.42657 -16.22588 -16.06769 -15.68111 -15.59307 -15.28478 -14.90128 -14.72248 -14.49321 -14.36291 -14.07147 -13.97931 -13.72614 -13.66600 -13.61108 -13.43183 -13.27720 -12.99371 -12.79564 -12.69410 -12.58834 -12.35033 -12.19269 -12.16629 -11.91577 -11.72521 -11.53975 -10.87399 -10.57520 -10.55113 -10.03257 -9.67252 -8.83645 -8.19040 -6.30376 -0.40352 -0.14713 0.98269 0.99879 1.42605 1.44740 1.50533 1.60270 1.75561 1.82624 1.87185 2.07342 2.42749 2.89917 2.94125 3.14750 3.24034 3.36614 3.74951 3.83758 3.92418 3.93286 4.02582 4.15059 4.22668 4.32979 4.36037 4.44007 4.56077 4.60421 4.65065 4.74112 4.77471 4.95238 4.98914 5.04017 5.15728 5.31773 5.37071 5.44572 5.49217 5.50787 5.79898 5.91791 5.94628 6.08688 6.42709 6.58904 6.67051 6.76043 7.04405 7.39957 8.87860 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013117 B = 0.003785 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.088395 B = 7395.501211 C = 8399.025576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.510 5.510 3 C 0.095 3.905 4 C 0.558 3.442 5 O -0.556 6.556 6 N -0.576 5.576 7 C 0.258 3.742 8 C -0.545 4.545 9 H 0.057 0.943 10 C 0.020 3.980 11 N -0.920 5.920 12 Si 0.950 3.050 13 H -0.266 1.266 14 H -0.284 1.284 15 H -0.278 1.278 16 C 0.112 3.888 17 C -0.040 4.040 18 C 0.243 3.757 19 N -0.484 5.484 20 C -0.141 4.141 21 C -0.011 4.011 22 C -0.111 4.111 23 C -0.079 4.079 24 C -0.126 4.126 25 C -0.069 4.069 26 C -0.167 4.167 27 C 0.539 3.461 28 O -0.562 6.562 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.017 0.983 34 H 0.266 0.734 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.184 0.816 40 H 0.168 0.832 41 H 0.167 0.833 42 H 0.158 0.842 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.248 -10.546 -0.690 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.227 5.227 3 C -0.008 4.008 4 C 0.343 3.657 5 O -0.433 6.433 6 N -0.306 5.306 7 C 0.138 3.862 8 C -0.583 4.583 9 H 0.075 0.925 10 C -0.180 4.180 11 N -0.560 5.560 12 Si 0.776 3.224 13 H -0.191 1.191 14 H -0.210 1.210 15 H -0.204 1.204 16 C -0.012 4.012 17 C -0.080 4.080 18 C -0.074 4.074 19 N -0.161 5.161 20 C -0.165 4.165 21 C -0.013 4.013 22 C -0.129 4.129 23 C -0.097 4.097 24 C -0.144 4.144 25 C -0.088 4.088 26 C -0.170 4.170 27 C 0.336 3.664 28 O -0.443 6.443 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.202 0.798 40 H 0.185 0.815 41 H 0.184 0.816 42 H 0.175 0.825 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 18.100 -11.308 0.242 21.343 hybrid contribution -2.012 0.148 -0.468 2.071 sum 16.088 -11.160 -0.226 19.581 Atomic orbital electron populations 1.22138 0.77158 1.04701 1.03975 1.45060 1.08809 1.04724 1.64107 1.19866 0.93551 0.84483 1.02903 1.18092 0.79396 0.83870 0.84311 1.90853 1.54638 1.65476 1.32374 1.48096 1.46958 1.30646 1.04893 1.19025 0.87261 0.82176 0.97697 1.21677 0.92382 0.93223 1.51056 0.92471 1.25596 1.02827 0.94877 0.94744 1.69993 1.34397 1.00899 1.50664 0.85721 0.80087 0.77728 0.78836 1.19067 1.20956 1.20378 1.21495 0.94628 0.98383 0.86727 1.19895 0.96650 1.03452 0.88047 1.29056 0.92235 0.92057 0.94080 1.81236 1.10782 1.10905 1.13218 1.21986 0.89076 0.99704 1.05703 1.19085 0.94887 0.90370 0.96957 1.21576 0.90860 1.00928 0.99570 1.21798 1.02194 0.91298 0.94364 1.21579 0.92748 1.00275 0.99763 1.21187 0.95152 0.96524 0.95977 1.19959 0.90562 0.96055 1.10452 1.18632 0.89037 0.81968 0.76766 1.90810 1.69861 1.31087 1.52564 0.91042 0.88595 0.90002 0.93609 0.96484 0.92488 0.88437 0.90277 0.84949 0.84562 0.79844 0.81455 0.81552 0.82452 0.85276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.97 9.91 127.77 1.27 3.23 16 2 N -0.51 -15.78 3.04 -654.68 -1.99 -17.76 16 3 C 0.10 2.71 4.50 40.03 0.18 2.89 16 4 C 0.56 19.48 5.02 86.67 0.44 19.92 16 5 O -0.56 -24.80 16.66 -4.04 -0.07 -24.87 16 6 N -0.58 -19.28 2.38 -830.00 -1.98 -21.26 16 7 C 0.26 11.36 5.19 85.63 0.44 11.80 16 8 C -0.54 -27.22 9.39 25.60 0.24 -26.98 16 9 H 0.06 2.81 7.54 -2.91 -0.02 2.79 16 10 C 0.02 1.03 5.46 84.66 0.46 1.49 16 11 N -0.92 -50.44 13.29 21.45 0.28 -50.15 16 12 Si 0.95 41.64 29.54 68.60 2.03 43.67 16 13 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 14 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 15 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 16 C 0.11 2.78 5.20 86.38 0.45 3.23 16 17 C -0.04 -0.69 6.01 28.79 0.17 -0.52 16 18 C 0.24 5.26 15.43 89.44 1.38 6.64 16 19 N -0.48 -13.34 18.54 20.00 0.37 -12.97 16 20 C -0.14 -2.98 8.34 23.76 0.20 -2.78 16 21 C -0.01 -0.23 5.89 -20.08 -0.12 -0.35 16 22 C -0.11 -1.44 9.86 22.49 0.22 -1.21 16 23 C -0.08 -0.83 10.01 22.31 0.22 -0.60 16 24 C -0.13 -1.69 10.01 22.33 0.22 -1.47 16 25 C -0.07 -1.45 9.65 22.44 0.22 -1.23 16 26 C -0.17 -4.22 5.90 -19.95 -0.12 -4.34 16 27 C 0.54 16.99 7.62 86.54 0.66 17.65 16 28 O -0.56 -20.49 16.10 -4.50 -0.07 -20.56 16 29 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.10 2.86 7.49 -2.39 -0.02 2.85 16 31 H 0.08 2.82 6.27 -2.39 -0.01 2.80 16 32 H 0.05 1.97 8.07 -2.38 -0.02 1.95 16 33 H 0.02 0.88 7.36 -2.39 -0.02 0.86 16 34 H 0.27 13.96 8.31 -92.70 -0.77 13.19 16 35 H 0.10 2.53 8.05 -2.38 -0.02 2.52 16 36 H 0.08 1.90 6.90 -2.39 -0.02 1.88 16 37 H 0.13 1.68 5.88 -2.39 -0.01 1.67 16 38 H 0.14 2.07 8.14 -2.38 -0.02 2.05 16 39 H 0.18 2.62 7.31 -2.91 -0.02 2.60 16 40 H 0.17 1.07 8.06 -2.91 -0.02 1.04 16 41 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 42 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 43 H 0.13 2.77 7.77 -2.91 -0.02 2.75 16 Total: -1.00 -73.34 375.65 6.17 -67.17 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 1.06 Total: 9.36 kcal Atomic # 6 Polarization: 20.84 SS G_CDS: 6.54 Total: 27.38 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -3.31 Total: -102.15 kcal Atomic # 8 Polarization: -45.29 SS G_CDS: -0.14 Total: -45.43 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -73.34 6.17 -67.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285109744.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.334 kcal (2) G-P(sol) polarization free energy of solvation -73.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds