Wall clock time and date at job start Sat Apr 11 2020 05:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.46786 * 2 1 4 4 C 1.46498 * 120.00063 * 269.99808 * 3 2 1 5 5 C 1.50696 * 109.47410 * 270.00612 * 4 3 2 6 6 H 1.07999 * 119.99887 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99942 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00150 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00120 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46943 * 59.99605 * 9 7 5 11 11 H 1.48496 * 109.47189 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47056 * 299.99782 * 9 7 5 13 13 C 1.34778 * 119.99450 * 90.00592 * 3 2 1 14 14 O 1.21286 * 119.99657 * 179.97438 * 13 3 2 15 15 C 1.50694 * 120.00400 * 359.97438 * 13 3 2 16 16 N 1.46501 * 109.47175 * 180.02562 * 15 13 3 17 17 C 1.39844 * 120.00072 * 180.02562 * 16 15 13 18 18 C 1.38836 * 120.08129 * 359.97438 * 17 16 15 19 19 C 1.38142 * 119.95174 * 180.02562 * 18 17 16 20 20 N 1.48005 * 119.94356 * 179.97438 * 19 18 17 21 21 O 1.21798 * 120.00444 * 353.57161 * 20 19 18 22 22 O 1.21806 * 119.99807 * 173.57162 * 20 19 18 23 23 C 1.38277 * 120.11162 * 0.02562 * 19 18 17 24 24 C 1.50702 * 119.91952 * 179.97438 * 23 19 18 25 25 C 1.38281 * 120.16393 * 359.97438 * 23 19 18 26 26 C 1.38290 * 120.04599 * 359.68013 * 25 23 19 27 27 F 1.35096 * 120.05434 * 180.29555 * 26 25 23 28 28 H 1.09000 * 109.47235 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46976 * 299.99595 * 1 2 3 30 30 H 1.08995 * 109.47214 * 59.99660 * 1 2 3 31 31 H 1.09003 * 109.46503 * 240.00331 * 2 1 3 32 32 H 1.08995 * 109.47214 * 120.00340 * 2 1 3 33 33 H 1.09001 * 109.47182 * 30.00893 * 4 3 2 34 34 H 1.09005 * 109.46695 * 150.00632 * 4 3 2 35 35 H 0.97005 * 119.99974 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.47219 * 300.00197 * 15 13 3 37 37 H 1.09002 * 109.47291 * 60.00129 * 15 13 3 38 38 H 0.97001 * 120.00174 * 359.97438 * 16 15 13 39 39 H 1.08000 * 120.02050 * 359.97438 * 18 17 16 40 40 H 1.08999 * 109.47471 * 83.08842 * 24 23 19 41 41 H 1.08996 * 109.47573 * 203.09696 * 24 23 19 42 42 H 1.09008 * 109.46927 * 323.09448 * 24 23 19 43 43 H 1.08000 * 119.98038 * 179.97438 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3425 1.2302 -1.0963 7 6 4.1492 2.3906 -2.8775 8 7 3.3492 3.1267 -3.6175 9 14 5.9136 2.0977 -3.4165 10 1 6.1415 0.6411 -3.5944 11 1 6.1610 2.7976 -4.7026 12 1 6.8408 2.6209 -2.3813 13 6 2.2430 2.0165 1.1673 14 8 2.6476 3.1598 1.1673 15 6 1.9914 1.3062 2.4723 16 7 2.3083 2.2039 3.5859 17 6 2.1530 1.7643 4.9043 18 6 1.6982 0.4777 5.1599 19 6 1.5452 0.0465 6.4634 20 7 1.0598 -1.3249 6.7356 21 8 0.6845 -2.0317 5.8174 22 8 1.0355 -1.7467 7.8780 23 6 1.8440 0.8943 7.5141 24 6 1.6750 0.4195 8.9344 25 6 2.2974 2.1766 7.2649 26 6 2.4597 2.6128 5.9627 27 9 2.9083 3.8636 5.7191 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.5816 1.6878 -2.0283 34 1 2.0955 3.1411 -1.1383 35 1 3.6752 3.5172 -4.4435 36 1 0.9434 1.0124 2.5299 37 1 2.6213 0.4185 2.5302 38 1 2.6266 3.1029 3.4087 39 1 1.4633 -0.1851 4.3403 40 1 2.5573 -0.1448 9.2363 41 1 1.5508 1.2793 9.5926 42 1 0.7945 -0.2196 9.0015 43 1 2.5294 2.8364 8.0878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296743311.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:30 Heat of formation + Delta-G solvation = -70.443060 kcal Electronic energy + Delta-G solvation = -29225.958637 eV Core-core repulsion = 24802.533906 eV Total energy + Delta-G solvation = -4423.424731 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.20998 -43.28754 -41.20195 -40.42908 -37.81829 -37.34091 -36.79175 -34.95495 -32.89146 -32.71902 -31.66232 -30.09775 -28.56524 -27.93788 -26.06287 -24.84721 -24.28754 -23.68110 -22.79683 -20.66325 -20.03274 -19.68765 -18.89633 -18.66691 -18.60820 -18.24708 -17.73663 -17.28067 -17.07977 -16.61958 -16.47199 -16.30610 -15.60648 -15.27734 -14.99004 -14.85574 -14.71009 -14.59732 -14.35123 -14.15454 -14.06702 -13.62582 -13.56448 -13.31079 -13.18752 -13.06779 -12.67841 -12.65023 -12.51762 -12.45899 -12.22401 -12.19328 -11.95310 -11.78076 -11.68268 -11.42976 -10.84671 -10.67417 -10.46720 -9.56349 -8.81050 -8.26281 -6.40963 -1.28332 -0.09300 0.22544 0.35603 1.34897 1.38283 1.45451 1.60412 1.73515 2.06432 2.30031 2.42293 2.76921 3.04043 3.23776 3.39550 3.46648 3.57348 3.89536 4.01406 4.13298 4.21452 4.29394 4.39719 4.40206 4.45347 4.53921 4.61467 4.78627 4.88403 4.95737 5.03322 5.04443 5.07242 5.12568 5.17248 5.37504 5.49639 5.52015 5.70128 5.78203 6.00932 6.22931 6.58172 6.60965 6.69899 7.17465 7.33271 8.80806 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015389 B = 0.002658 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.059916 B =10530.773846 C =11453.546219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.594 5.594 4 C 0.262 3.738 5 C -0.545 4.545 6 H 0.055 0.945 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.492 3.508 14 O -0.590 6.590 15 C 0.112 3.888 16 N -0.728 5.728 17 C 0.185 3.815 18 C -0.119 4.119 19 C -0.020 4.020 20 N 0.034 4.966 21 O -0.196 6.196 22 O -0.148 6.148 23 C -0.043 4.043 24 C -0.124 4.124 25 C -0.094 4.094 26 C 0.073 3.927 27 F -0.131 7.131 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.026 0.974 34 H -0.002 1.002 35 H 0.267 0.733 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.412 0.588 39 H 0.168 0.832 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.406 -7.786 24.171 25.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.324 5.324 4 C 0.141 3.859 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.790 3.210 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.204 1.204 13 C 0.280 3.720 14 O -0.471 6.471 15 C -0.015 4.015 16 N -0.360 5.360 17 C 0.078 3.922 18 C -0.144 4.144 19 C -0.104 4.104 20 N 0.548 4.452 21 O -0.403 6.403 22 O -0.366 6.366 23 C -0.047 4.047 24 C -0.180 4.180 25 C -0.114 4.114 26 C 0.049 3.951 27 F -0.110 7.110 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.123 0.877 33 H 0.044 0.956 34 H 0.017 0.983 35 H 0.076 0.924 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.251 0.749 39 H 0.186 0.814 40 H 0.111 0.889 41 H 0.117 0.883 42 H 0.106 0.894 43 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -5.041 -6.575 23.574 24.987 hybrid contribution 0.928 0.572 -1.292 1.691 sum -4.113 -6.003 22.281 23.440 Atomic orbital electron populations 1.22177 0.94370 1.03790 1.01802 1.21871 0.95461 0.80919 1.04541 1.48222 1.62991 1.15233 1.05977 1.18748 0.95402 0.91599 0.80158 1.21668 0.97852 1.32146 1.06648 0.92693 1.25834 1.02278 0.94456 0.96453 1.70038 1.37801 1.34069 1.14809 0.85497 0.79109 0.79051 0.77346 1.18435 1.20458 1.20380 1.20941 0.77825 0.86644 0.86567 1.90657 1.48381 1.20475 1.87610 1.21341 1.04343 0.93167 0.82632 1.44457 1.72776 1.17817 1.00902 1.17493 0.97621 0.92477 0.84597 1.20209 1.03061 0.94874 0.96219 1.20678 1.10987 0.82991 0.95761 1.43646 0.98184 1.03089 1.00255 1.94560 1.51270 1.56158 1.38311 1.94450 1.58444 1.76777 1.06954 1.19701 0.96322 0.91926 0.96720 1.21276 1.04736 1.03434 0.88594 1.21113 0.99506 0.95638 0.95120 1.17693 1.03279 0.80588 0.93529 1.91540 1.86589 1.37749 1.95109 0.88436 0.92013 0.94187 0.90500 0.87685 0.95644 0.98349 0.92370 0.86122 0.86608 0.74937 0.81448 0.88853 0.88256 0.89395 0.79153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 10.24 71.98 0.74 -2.88 16 2 C 0.09 2.55 5.93 86.38 0.51 3.07 16 3 N -0.59 -23.22 2.46 -826.15 -2.03 -25.25 16 4 C 0.26 13.60 5.16 85.63 0.44 14.05 16 5 C -0.54 -30.50 9.39 25.60 0.24 -30.26 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.51 5.46 84.65 0.46 0.98 16 8 N -0.93 -55.32 13.29 21.45 0.28 -55.03 16 9 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 10 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 C 0.49 18.62 7.74 87.66 0.68 19.30 16 14 O -0.59 -28.38 15.25 -3.05 -0.05 -28.43 16 15 C 0.11 2.74 3.95 85.63 0.34 3.08 16 16 N -0.73 -18.41 5.71 -342.91 -1.96 -20.37 16 17 C 0.19 3.82 6.66 38.21 0.25 4.08 16 18 C -0.12 -2.22 8.82 22.39 0.20 -2.03 16 19 C -0.02 -0.37 6.83 36.36 0.25 -0.12 16 20 N 0.03 0.74 4.45 -46.50 -0.21 0.54 16 21 O -0.20 -4.80 18.46 18.89 0.35 -4.46 16 22 O -0.15 -3.13 15.35 18.88 0.29 -2.84 16 23 C -0.04 -0.60 5.88 -19.84 -0.12 -0.72 16 24 C -0.12 -1.20 8.67 71.24 0.62 -0.58 16 25 C -0.09 -1.20 9.64 22.29 0.21 -0.98 16 26 C 0.07 1.37 7.31 22.48 0.16 1.53 16 27 F -0.13 -2.87 16.64 44.97 0.75 -2.12 16 28 H 0.10 1.55 8.14 -2.39 -0.02 1.54 16 29 H 0.06 1.23 7.22 -2.38 -0.02 1.22 16 30 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 2.27 8.07 -2.39 -0.02 2.25 16 32 H 0.11 2.04 6.44 -2.39 -0.02 2.03 16 33 H 0.03 1.35 8.07 -2.39 -0.02 1.33 16 34 H 0.00 -0.10 7.42 -2.38 -0.02 -0.12 16 35 H 0.27 15.02 8.31 -92.70 -0.77 14.24 16 36 H 0.12 2.26 6.99 -2.39 -0.02 2.24 16 37 H 0.12 2.29 7.21 -2.39 -0.02 2.28 16 38 H 0.41 12.35 6.93 -92.71 -0.64 11.71 16 39 H 0.17 2.78 6.30 -2.91 -0.02 2.77 16 40 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 41 H 0.10 0.44 8.03 -2.39 -0.02 0.42 16 42 H 0.09 1.07 5.86 -2.38 -0.01 1.05 16 43 H 0.19 1.13 8.05 -2.91 -0.02 1.11 16 Total: -1.00 -73.39 371.29 4.88 -68.51 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.43 Total: 14.76 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 4.99 Total: 8.51 kcal Atomic # 7 Polarization: -96.20 SS G_CDS: -3.91 Total: -100.11 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: 0.59 Total: -35.73 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.75 Total: -2.12 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -73.39 4.88 -68.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296743311.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.933 kcal (2) G-P(sol) polarization free energy of solvation -73.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds