Wall clock time and date at job start Sat Apr 11 2020 05:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00020 * 2 1 4 4 C 1.50706 * 109.46949 * 89.99910 * 3 2 1 5 5 H 1.07995 * 120.00167 * 359.72205 * 4 3 2 6 6 C 1.37879 * 119.99394 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48507 * 109.46754 * 210.00056 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 C 1.39008 * 119.99895 * 179.97438 * 2 1 3 13 13 C 1.39140 * 119.70106 * 185.00217 * 12 2 1 14 14 C 1.38298 * 119.09032 * 180.02562 * 13 12 2 15 15 C 1.38882 * 118.50817 * 359.97438 * 14 13 12 16 16 S 1.76201 * 120.33543 * 179.97438 * 15 14 13 17 17 O 1.42098 * 106.40062 * 203.54010 * 16 15 14 18 18 O 1.42104 * 106.40145 * 336.45308 * 16 15 14 19 19 N 1.65599 * 107.22387 * 89.99729 * 16 15 14 20 20 C 1.46926 * 120.62952 * 269.72364 * 19 16 15 21 21 C 1.53615 * 108.54474 * 126.36545 * 20 19 16 22 22 C 1.53045 * 109.24481 * 54.85391 * 21 20 19 23 23 C 1.53044 * 109.53473 * 298.51542 * 22 21 20 24 24 C 1.46918 * 120.63010 * 89.99635 * 19 16 15 25 25 C 1.38024 * 119.33173 * 359.97438 * 15 14 13 26 26 N 1.31973 * 120.85234 * 359.73166 * 25 15 14 27 27 H 1.09001 * 109.47412 * 89.99916 * 1 2 3 28 28 H 1.09000 * 109.47567 * 210.00198 * 1 2 3 29 29 H 1.09002 * 109.47279 * 329.99646 * 1 2 3 30 30 H 1.09000 * 109.47175 * 329.99936 * 3 2 1 31 31 H 1.09001 * 109.47297 * 209.99443 * 3 2 1 32 32 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 33 33 H 1.07998 * 120.45389 * 359.97438 * 13 12 2 34 34 H 1.08006 * 120.74568 * 179.97438 * 14 13 12 35 35 H 1.09004 * 109.58392 * 246.19752 * 20 19 16 36 36 H 1.09001 * 109.58738 * 6.61959 * 20 19 16 37 37 H 1.08999 * 109.63574 * 294.86601 * 21 20 19 38 38 H 1.08999 * 109.46106 * 174.74001 * 21 20 19 39 39 H 1.08997 * 109.46217 * 178.48979 * 22 21 20 40 40 H 1.09003 * 109.45353 * 58.52781 * 22 21 20 41 41 H 1.08997 * 109.49665 * 301.40719 * 23 22 21 42 42 H 1.08997 * 109.49401 * 181.31188 * 23 22 21 43 43 H 1.09004 * 109.58978 * 353.37926 * 24 19 16 44 44 H 1.09005 * 109.58475 * 113.79830 * 24 19 16 45 45 H 1.07994 * 119.57230 * 179.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 1.4209 5 1 2.0938 1.0983 2.2417 6 6 3.1268 2.8775 1.6727 7 7 3.5542 3.6176 0.6731 8 14 3.4388 3.4163 3.4339 9 1 4.7337 2.8588 3.9003 10 1 3.4871 4.8993 3.4966 11 1 2.3435 2.9195 4.3050 12 6 2.1600 -1.2039 0.0005 13 6 3.5474 -1.1989 0.1059 14 6 4.2261 -2.4038 0.1046 15 6 3.4921 -3.5780 -0.0018 16 16 4.3077 -5.1399 -0.0090 17 8 3.4303 -6.0477 -0.6611 18 8 5.6379 -4.8959 -0.4452 19 7 4.4165 -5.6435 1.5648 20 6 5.5852 -5.2936 2.3836 21 6 5.0936 -4.6238 3.6757 22 6 4.0918 -5.5472 4.3729 23 6 2.8850 -5.7756 3.4598 24 6 3.3490 -6.4536 2.1670 25 6 2.1172 -3.5091 -0.1020 26 7 1.4954 -2.3451 -0.0923 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.6084 2.0284 -0.5138 31 1 3.1499 1.1384 -0.5137 32 1 4.0310 4.4434 0.8504 33 1 4.0868 -0.2668 0.1868 34 1 5.3029 -2.4311 0.1846 35 1 6.1445 -6.1970 2.6270 36 1 6.2239 -4.6032 1.8326 37 1 4.6098 -3.6769 3.4362 38 1 5.9416 -4.4423 4.3360 39 1 3.7609 -5.0871 5.3040 40 1 4.5691 -6.5028 4.5898 41 1 2.4221 -4.8178 3.2224 42 1 2.1615 -6.4144 3.9663 43 1 2.5118 -6.5290 1.4731 44 1 3.7297 -7.4498 2.3930 45 1 1.5426 -4.4197 -0.1854 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298193171.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:33 Heat of formation + Delta-G solvation = -54.904724 kcal Electronic energy + Delta-G solvation = -28206.505851 eV Core-core repulsion = 24349.968089 eV Total energy + Delta-G solvation = -3856.537762 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.25967 -39.26639 -38.36027 -37.74831 -36.91982 -34.86546 -33.50809 -33.33004 -31.93246 -31.60794 -29.90322 -27.16769 -25.49247 -25.29577 -24.31217 -24.07863 -22.51422 -21.34150 -19.86364 -19.10630 -18.77354 -18.51999 -17.87647 -17.83799 -16.76187 -16.53610 -15.87910 -15.77165 -15.50330 -15.48529 -15.22671 -15.09599 -14.62209 -14.53180 -14.46695 -14.26628 -14.06787 -13.92296 -13.49023 -13.36681 -13.19270 -13.12092 -12.95730 -12.86790 -12.78748 -12.64770 -12.31580 -12.11208 -12.07160 -11.93303 -11.77767 -11.43670 -11.41000 -11.19218 -10.79457 -10.69365 -10.52572 -9.91583 -8.75996 -8.22019 -6.44084 -0.58497 -0.04248 0.33561 1.37209 1.38689 1.48497 1.97700 2.06498 2.36361 2.65011 2.85787 3.02184 3.26740 3.47736 3.73489 3.82866 4.01473 4.04786 4.05631 4.19066 4.31758 4.34833 4.42836 4.51017 4.60611 4.67094 4.67367 4.81263 4.86870 4.87780 4.88786 4.89478 4.97958 5.00909 5.09093 5.11905 5.25591 5.27436 5.37665 5.51777 5.53637 5.59021 5.70361 5.91422 5.96822 6.45954 6.64576 7.00756 7.28446 8.77736 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012560 B = 0.003711 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.850940 B = 7544.172532 C = 8415.259663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.588 5.588 3 C 0.261 3.739 4 C -0.546 4.546 5 H 0.052 0.948 6 C 0.021 3.979 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.270 1.270 12 C 0.434 3.566 13 C -0.261 4.261 14 C 0.054 3.946 15 C -0.807 4.807 16 S 2.727 3.273 17 O -0.978 6.978 18 O -0.985 6.985 19 N -0.993 5.993 20 C 0.115 3.885 21 C -0.138 4.138 22 C -0.115 4.115 23 C -0.136 4.136 24 C 0.114 3.886 25 C 0.244 3.756 26 N -0.571 5.571 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.026 0.974 31 H 0.023 0.977 32 H 0.270 0.730 33 H 0.130 0.870 34 H 0.157 0.843 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.047 0.953 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.048 0.952 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.802 -19.722 6.341 20.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.293 5.293 3 C 0.140 3.860 4 C -0.585 4.585 5 H 0.070 0.930 6 C -0.179 4.179 7 N -0.560 5.560 8 Si 0.786 3.214 9 H -0.198 1.198 10 H -0.204 1.204 11 H -0.195 1.195 12 C 0.197 3.803 13 C -0.287 4.287 14 C 0.028 3.972 15 C -0.900 4.900 16 S 2.818 3.182 17 O -0.969 6.969 18 O -0.976 6.976 19 N -0.833 5.833 20 C -0.009 4.009 21 C -0.177 4.177 22 C -0.152 4.152 23 C -0.175 4.175 24 C -0.010 4.010 25 C 0.080 3.920 26 N -0.291 5.291 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.148 0.852 34 H 0.174 0.826 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.067 0.933 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 0.142 -19.637 5.493 20.392 hybrid contribution 0.663 1.761 0.922 2.096 sum 0.806 -17.876 6.415 19.009 Atomic orbital electron populations 1.21615 0.78266 1.02830 1.01554 1.47273 1.06965 1.03305 1.71778 1.19109 0.91525 0.78804 0.96553 1.21612 1.37166 1.07074 0.92607 0.92991 1.25697 0.94812 0.96045 1.01395 1.70013 1.38368 1.14780 1.32833 0.85507 0.78751 0.77512 0.79639 1.19812 1.20406 1.19489 1.18878 0.89048 0.86515 0.85887 1.21639 0.93906 1.00215 1.12956 1.21058 1.00307 0.89913 0.85876 1.31389 1.06890 1.21447 1.30296 1.00761 0.72409 0.72467 0.72570 1.93512 1.67838 1.62298 1.73229 1.93512 1.37274 1.86491 1.80288 1.57637 1.29461 1.65649 1.30561 1.21727 0.85937 1.01377 0.91906 1.22016 1.00303 0.98633 0.96795 1.21460 0.95626 1.00275 0.97856 1.21936 0.98528 1.01058 0.96017 1.21689 0.89197 0.94613 0.95520 1.22495 0.90081 0.95397 0.83993 1.67336 1.40239 0.97607 1.23895 0.92500 0.90519 0.91344 0.95612 0.95924 0.92138 0.85188 0.82559 0.88595 0.89752 0.93401 0.89413 0.91820 0.90114 0.93277 0.88917 0.89056 0.88664 0.79439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.54 10.42 127.77 1.33 4.87 16 2 N -0.59 -25.13 2.97 -733.21 -2.18 -27.31 16 3 C 0.26 12.82 4.79 85.63 0.41 13.23 16 4 C -0.55 -28.67 9.34 25.60 0.24 -28.43 16 5 H 0.05 2.78 7.81 -2.91 -0.02 2.75 16 6 C 0.02 1.11 5.46 84.66 0.46 1.57 16 7 N -0.92 -51.06 13.29 21.45 0.28 -50.78 16 8 Si 0.96 41.63 29.54 68.60 2.03 43.66 16 9 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 10 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 12 C 0.43 17.81 7.37 133.06 0.98 18.79 16 13 C -0.26 -10.43 9.19 22.50 0.21 -10.23 16 14 C 0.05 1.81 9.64 22.44 0.22 2.03 16 15 C -0.81 -24.28 5.99 22.37 0.13 -24.15 16 16 S 2.73 71.03 5.70 -56.49 -0.32 70.71 16 17 O -0.98 -28.10 16.01 -128.00 -2.05 -30.15 16 18 O -0.99 -30.24 16.06 -128.00 -2.06 -32.30 16 19 N -0.99 -19.34 3.28 -512.31 -1.68 -21.02 16 20 C 0.12 1.94 6.41 86.51 0.55 2.49 16 21 C -0.14 -2.24 6.10 30.82 0.19 -2.05 16 22 C -0.11 -1.54 5.88 30.62 0.18 -1.36 16 23 C -0.14 -1.97 6.08 30.67 0.19 -1.78 16 24 C 0.11 1.73 6.37 86.36 0.55 2.28 16 25 C 0.24 7.56 10.68 84.62 0.90 8.46 16 26 N -0.57 -20.94 9.16 -193.26 -1.77 -22.72 16 27 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.08 2.54 7.45 -2.39 -0.02 2.53 16 29 H 0.07 2.39 8.07 -2.39 -0.02 2.37 16 30 H 0.03 1.33 8.07 -2.39 -0.02 1.31 16 31 H 0.02 1.19 6.39 -2.39 -0.02 1.17 16 32 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 33 H 0.13 5.70 6.22 -2.91 -0.02 5.68 16 34 H 0.16 4.49 7.71 -2.91 -0.02 4.46 16 35 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.54 7.12 -2.39 -0.02 1.52 16 37 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.09 1.38 7.13 -2.38 -0.02 1.36 16 44 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 45 H 0.19 4.56 7.62 -2.91 -0.02 4.54 16 Total: -1.00 -65.95 376.20 -0.22 -66.17 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.98 Total: 18.01 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 6.54 Total: -14.28 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -5.35 Total: -121.82 kcal Atomic # 8 Polarization: -58.34 SS G_CDS: -4.11 Total: -62.45 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: 71.03 SS G_CDS: -0.32 Total: 70.71 kcal Total: -65.95 -0.22 -66.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298193171.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.268 kcal (2) G-P(sol) polarization free energy of solvation -65.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds