Wall clock time and date at job start Sat Apr 11 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 S 1.65596 * 119.99970 * 2 1 4 4 O 1.42105 * 106.40432 * 311.45978 * 3 2 1 5 5 O 1.42103 * 106.40542 * 178.53639 * 3 2 1 6 6 N 1.65605 * 107.21956 * 64.99851 * 3 2 1 7 7 C 1.47086 * 120.87874 * 89.99901 * 6 3 2 8 8 C 1.53241 * 108.51824 * 231.20616 * 7 6 3 9 9 N 1.46898 * 109.34351 * 306.17186 * 8 7 6 10 10 C 1.46897 * 111.00298 * 187.25313 * 9 8 7 11 11 C 1.50694 * 109.47438 * 169.99969 * 10 9 8 12 12 C 1.38631 * 119.74861 * 89.99798 * 11 10 9 13 13 C 1.37621 * 120.24953 * 179.97438 * 12 11 10 14 14 C 1.40722 * 119.74281 * 0.02562 * 13 12 11 15 15 C 1.41397 * 120.24551 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99675 * 335.21328 * 15 14 13 17 17 C 1.39941 * 120.00117 * 154.93122 * 15 14 13 18 18 N 1.30831 * 120.00117 * 342.49004 * 17 15 14 19 19 Si 1.86797 * 120.00094 * 162.49029 * 17 15 14 20 20 H 1.48500 * 109.47305 * 94.51868 * 19 17 15 21 21 H 1.48502 * 109.47201 * 214.52371 * 19 17 15 22 22 H 1.48507 * 109.46854 * 334.52024 * 19 17 15 23 23 C 1.40717 * 119.51112 * 0.26461 * 14 13 12 24 24 C 1.37618 * 119.74540 * 359.47538 * 23 14 13 25 25 C 1.46902 * 111.26922 * 63.10360 * 9 8 7 26 26 C 1.47075 * 120.88231 * 270.02213 * 6 3 2 27 27 H 1.08999 * 109.46891 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47287 * 300.00132 * 1 2 3 29 29 H 1.09003 * 109.47042 * 59.99728 * 1 2 3 30 30 H 0.96998 * 120.00269 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.62506 * 111.50026 * 7 6 3 32 32 H 1.08994 * 109.62742 * 350.91746 * 7 6 3 33 33 H 1.09002 * 109.49274 * 186.20943 * 8 7 6 34 34 H 1.09000 * 109.49223 * 66.13464 * 8 7 6 35 35 H 1.09008 * 109.46958 * 49.99774 * 10 9 8 36 36 H 1.09003 * 109.47154 * 290.00264 * 10 9 8 37 37 H 1.07994 * 119.87767 * 359.97438 * 12 11 10 38 38 H 1.08002 * 120.13117 * 179.97438 * 13 12 11 39 39 H 0.96999 * 119.99768 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.12568 * 179.70310 * 23 14 13 41 41 H 1.07998 * 119.87988 * 180.27141 * 24 23 14 42 42 H 1.09001 * 109.49102 * 56.85635 * 25 9 8 43 43 H 1.08998 * 109.49365 * 176.93904 * 25 9 8 44 44 H 1.09000 * 109.62889 * 248.49765 * 26 6 3 45 45 H 1.08995 * 109.62898 * 9.08330 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7120 2.2329 -1.0216 5 8 3.6738 1.1003 0.0348 6 7 1.9591 2.1929 1.4336 7 6 2.7978 1.9668 2.6206 8 6 1.8874 1.5957 3.7961 9 7 0.8523 2.6260 3.9540 10 6 0.0648 2.3987 5.1731 11 6 -0.8144 3.5945 5.4335 12 6 -2.0906 3.6405 4.8940 13 6 -2.9025 4.7273 5.1256 14 6 -2.4324 5.7947 5.9131 15 6 -3.2574 6.9167 6.1575 16 1 -4.0475 7.1670 5.4651 17 6 -3.0537 7.6995 7.2995 18 7 -2.3567 7.2269 8.3008 19 14 -3.7771 9.4191 7.3944 20 1 -5.0906 9.3662 8.0852 21 1 -2.8548 10.3030 8.1515 22 1 -3.9611 9.9551 6.0217 23 6 -1.1330 5.7398 6.4505 24 6 -0.3406 4.6406 6.2102 25 6 -0.0163 2.6944 2.7713 26 6 0.8160 3.1105 1.5538 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.9501 -0.8400 0.0004 31 1 3.3495 2.8764 2.8577 32 1 3.4953 1.1521 2.4263 33 1 2.4798 1.5323 4.7090 34 1 1.4154 0.6328 3.6008 35 1 0.7376 2.2514 6.0180 36 1 -0.5563 1.5122 5.0444 37 1 -2.4491 2.8205 4.2896 38 1 -3.8962 4.7614 4.7040 39 1 -2.2153 7.7697 9.0921 40 1 -0.7605 6.5555 7.0523 41 1 0.6553 4.5943 6.6253 42 1 -0.4618 1.7162 2.5902 43 1 -0.8046 3.4278 2.9409 44 1 1.1773 4.1300 1.6884 45 1 0.2033 3.0519 0.6542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331346289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:46 Heat of formation + Delta-G solvation = -45.784652 kcal Electronic energy + Delta-G solvation = -27718.016386 eV Core-core repulsion = 23861.874100 eV Total energy + Delta-G solvation = -3856.142286 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.11436 -37.47103 -37.45867 -36.02798 -35.23799 -34.84789 -33.45743 -31.23985 -30.38964 -29.27477 -27.61517 -26.28562 -25.32532 -23.82199 -22.94483 -21.09855 -20.76929 -19.84137 -19.28298 -18.26725 -17.68381 -17.31883 -16.58475 -15.55860 -15.38642 -15.17384 -15.07924 -14.77403 -14.54165 -14.21924 -14.03135 -13.98849 -13.53769 -13.39219 -13.08996 -12.71296 -12.54041 -12.45313 -12.27063 -12.03809 -11.96221 -11.90971 -11.67092 -11.58015 -11.37717 -11.18553 -11.08102 -10.98367 -10.81976 -10.45946 -10.38349 -9.94901 -9.66725 -9.40401 -9.23934 -9.15144 -8.04341 -7.46656 -7.31986 -6.78716 -4.37230 0.38727 2.64023 2.71272 3.03425 3.06169 3.09063 3.15640 3.34441 3.91441 4.13483 4.14439 4.49621 4.66216 4.71587 4.97880 5.06164 5.11752 5.21237 5.23603 5.34475 5.41952 5.45374 5.60332 5.68444 5.73963 5.79373 5.90512 5.93840 6.03903 6.10134 6.17889 6.30810 6.37023 6.41112 6.66734 6.93013 7.04770 7.23578 7.27528 7.34371 7.37601 7.59009 7.84042 8.03378 8.10876 8.27787 8.62439 8.87464 8.95374 10.16091 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023120 B = 0.002451 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.804227 B =11420.273559 C =11648.449130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -1.133 6.133 3 S 2.788 3.212 4 O -0.976 6.976 5 O -0.981 6.981 6 N -1.005 6.005 7 C 0.129 3.871 8 C 0.041 3.959 9 N -0.528 5.528 10 C 0.122 3.878 11 C -0.210 4.210 12 C -0.085 4.085 13 C -0.227 4.227 14 C 0.114 3.886 15 C -0.463 4.463 16 H 0.077 0.923 17 C 0.076 3.924 18 N -0.793 5.793 19 Si 0.906 3.094 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.260 1.260 23 C -0.166 4.166 24 C -0.078 4.078 25 C 0.041 3.959 26 C 0.125 3.875 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.414 0.586 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.031 0.969 35 H 0.066 0.934 36 H 0.022 0.978 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.280 0.720 40 H 0.115 0.885 41 H 0.086 0.914 42 H 0.028 0.972 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.643 -13.000 -10.143 17.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.893 5.893 3 S 2.795 3.205 4 O -0.959 6.959 5 O -0.965 6.965 6 N -0.846 5.846 7 C 0.004 3.996 8 C -0.089 4.089 9 N -0.252 5.252 10 C -0.004 4.004 11 C -0.211 4.211 12 C -0.104 4.104 13 C -0.247 4.247 14 C 0.111 3.889 15 C -0.493 4.493 16 H 0.095 0.905 17 C -0.141 4.141 18 N -0.418 5.418 19 Si 0.730 3.270 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.184 1.184 23 C -0.185 4.185 24 C -0.097 4.097 25 C -0.088 4.088 26 C 0.000 4.000 27 H 0.098 0.902 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.247 0.753 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.133 0.867 41 H 0.105 0.895 42 H 0.046 0.954 43 H 0.121 0.879 44 H 0.102 0.898 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.399 -11.997 -10.572 17.619 hybrid contribution -0.884 -0.584 0.534 1.187 sum 6.515 -12.581 -10.038 17.364 Atomic orbital electron populations 1.21474 0.78657 1.04004 1.02043 1.55807 1.16272 1.25199 1.92033 1.01869 0.72801 0.72771 0.73088 1.93615 1.79200 1.68283 1.54787 1.93611 1.31612 1.84229 1.87002 1.58076 1.40264 1.58274 1.28030 1.21514 0.91959 1.02377 0.83784 1.22455 0.94857 0.93123 0.98488 1.61968 1.14506 1.46049 1.02723 1.20731 0.94003 0.95191 0.90466 1.18809 0.95409 0.98154 1.08767 1.20326 0.93980 0.96960 0.99160 1.20933 0.98829 0.95779 1.09127 1.17617 0.91430 0.90908 0.88923 1.19597 1.14777 1.08795 1.06097 0.90517 1.25902 0.93935 0.99590 0.94710 1.69828 1.31455 1.36599 1.03901 0.86339 0.79311 0.81799 0.79513 1.19628 1.20040 1.18408 1.21286 0.94115 0.98439 1.04691 1.20472 0.97399 0.94080 0.97708 1.22538 0.95863 1.00645 0.89773 1.21624 0.86091 0.94007 0.98319 0.90218 0.92111 0.91496 0.75294 0.90055 0.89533 0.89809 0.95104 0.91514 0.95946 0.89989 0.89196 0.90893 0.86690 0.89539 0.95356 0.87899 0.89839 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 11.16 59.85 0.67 1.25 16 2 N -1.13 -9.03 6.24 -16.63 -0.10 -9.13 16 3 S 2.79 31.59 6.15 -107.50 -0.66 30.93 16 4 O -0.98 -13.94 16.64 -57.17 -0.95 -14.90 16 5 O -0.98 -13.36 16.92 -57.17 -0.97 -14.33 16 6 N -1.00 -11.19 3.39 -113.23 -0.38 -11.58 16 7 C 0.13 1.36 6.53 -3.60 -0.02 1.33 16 8 C 0.04 0.45 5.62 -3.70 -0.02 0.43 16 9 N -0.53 -7.46 4.62 -235.76 -1.09 -8.55 16 10 C 0.12 1.94 5.11 -4.98 -0.03 1.92 16 11 C -0.21 -4.19 4.91 -104.33 -0.51 -4.71 16 12 C -0.09 -1.76 7.82 -39.66 -0.31 -2.07 16 13 C -0.23 -5.30 9.80 -38.87 -0.38 -5.68 16 14 C 0.11 2.93 5.56 -106.82 -0.59 2.34 16 15 C -0.46 -12.02 9.05 -37.74 -0.34 -12.36 16 16 H 0.08 1.92 7.91 -52.49 -0.41 1.50 16 17 C 0.08 1.89 5.14 -17.34 -0.09 1.80 16 18 N -0.79 -20.13 11.00 55.55 0.61 -19.52 16 19 Si 0.91 18.36 29.59 -169.99 -5.03 13.33 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 21 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 23 C -0.17 -4.17 8.69 -38.87 -0.34 -4.50 16 24 C -0.08 -1.72 9.67 -39.66 -0.38 -2.11 16 25 C 0.04 0.54 5.33 -3.70 -0.02 0.52 16 26 C 0.12 1.50 6.53 -3.60 -0.02 1.47 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.43 6.95 -51.93 -0.36 0.07 16 29 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.41 2.48 8.96 -34.46 -0.31 2.17 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.78 7.22 -51.93 -0.37 0.41 16 33 H 0.08 0.85 7.99 -51.93 -0.41 0.44 16 34 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 1.02 7.91 -51.92 -0.41 0.61 16 36 H 0.02 0.34 8.06 -51.93 -0.42 -0.08 16 37 H 0.08 1.47 7.92 -52.49 -0.42 1.06 16 38 H 0.09 1.99 8.06 -52.49 -0.42 1.57 16 39 H 0.28 6.47 8.30 -40.82 -0.34 6.14 16 40 H 0.12 3.02 6.22 -52.49 -0.33 2.69 16 41 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 42 H 0.03 0.34 6.95 -51.93 -0.36 -0.02 16 43 H 0.10 1.58 5.65 -51.93 -0.29 1.29 16 44 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.09 0.95 7.22 -51.93 -0.37 0.57 16 LS Contribution 370.84 15.07 5.59 5.59 Total: -1.00 -30.70 370.84 -11.95 -42.65 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.57 Total: 5.86 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -2.39 Total: -20.36 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -0.97 Total: -48.78 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -1.92 Total: -29.22 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Atomic # 16 Polarization: 31.59 SS G_CDS: -0.66 Total: 30.93 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.70 -11.95 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331346289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.133 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds