Wall clock time and date at job start Sat Apr 11 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 S 1.65596 * 119.99970 * 2 1 4 4 O 1.42105 * 106.40432 * 311.45978 * 3 2 1 5 5 O 1.42103 * 106.40542 * 178.53639 * 3 2 1 6 6 N 1.65605 * 107.21956 * 64.99851 * 3 2 1 7 7 C 1.47086 * 120.87874 * 89.99901 * 6 3 2 8 8 C 1.53241 * 108.51824 * 231.20616 * 7 6 3 9 9 N 1.46898 * 109.34351 * 306.17186 * 8 7 6 10 10 C 1.46897 * 111.00298 * 187.25313 * 9 8 7 11 11 C 1.50694 * 109.47438 * 169.99969 * 10 9 8 12 12 C 1.38631 * 119.74861 * 89.99798 * 11 10 9 13 13 C 1.37621 * 120.24953 * 179.97438 * 12 11 10 14 14 C 1.40722 * 119.74281 * 0.02562 * 13 12 11 15 15 C 1.41397 * 120.24551 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99675 * 335.21328 * 15 14 13 17 17 C 1.39941 * 120.00117 * 154.93122 * 15 14 13 18 18 N 1.30831 * 120.00117 * 342.49004 * 17 15 14 19 19 Si 1.86797 * 120.00094 * 162.49029 * 17 15 14 20 20 H 1.48500 * 109.47305 * 94.51868 * 19 17 15 21 21 H 1.48502 * 109.47201 * 214.52371 * 19 17 15 22 22 H 1.48507 * 109.46854 * 334.52024 * 19 17 15 23 23 C 1.40717 * 119.51112 * 0.26461 * 14 13 12 24 24 C 1.37618 * 119.74540 * 359.47538 * 23 14 13 25 25 C 1.46902 * 111.26922 * 63.10360 * 9 8 7 26 26 C 1.47075 * 120.88231 * 270.02213 * 6 3 2 27 27 H 1.08999 * 109.46891 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47287 * 300.00132 * 1 2 3 29 29 H 1.09003 * 109.47042 * 59.99728 * 1 2 3 30 30 H 0.96998 * 120.00269 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.62506 * 111.50026 * 7 6 3 32 32 H 1.08994 * 109.62742 * 350.91746 * 7 6 3 33 33 H 1.09002 * 109.49274 * 186.20943 * 8 7 6 34 34 H 1.09000 * 109.49223 * 66.13464 * 8 7 6 35 35 H 1.09008 * 109.46958 * 49.99774 * 10 9 8 36 36 H 1.09003 * 109.47154 * 290.00264 * 10 9 8 37 37 H 1.07994 * 119.87767 * 359.97438 * 12 11 10 38 38 H 1.08002 * 120.13117 * 179.97438 * 13 12 11 39 39 H 0.96999 * 119.99768 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.12568 * 179.70310 * 23 14 13 41 41 H 1.07998 * 119.87988 * 180.27141 * 24 23 14 42 42 H 1.09001 * 109.49102 * 56.85635 * 25 9 8 43 43 H 1.08998 * 109.49365 * 176.93904 * 25 9 8 44 44 H 1.09000 * 109.62889 * 248.49765 * 26 6 3 45 45 H 1.08995 * 109.62898 * 9.08330 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7120 2.2329 -1.0216 5 8 3.6738 1.1003 0.0348 6 7 1.9591 2.1929 1.4336 7 6 2.7978 1.9668 2.6206 8 6 1.8874 1.5957 3.7961 9 7 0.8523 2.6260 3.9540 10 6 0.0648 2.3987 5.1731 11 6 -0.8144 3.5945 5.4335 12 6 -2.0906 3.6405 4.8940 13 6 -2.9025 4.7273 5.1256 14 6 -2.4324 5.7947 5.9131 15 6 -3.2574 6.9167 6.1575 16 1 -4.0475 7.1670 5.4651 17 6 -3.0537 7.6995 7.2995 18 7 -2.3567 7.2269 8.3008 19 14 -3.7771 9.4191 7.3944 20 1 -5.0906 9.3662 8.0852 21 1 -2.8548 10.3030 8.1515 22 1 -3.9611 9.9551 6.0217 23 6 -1.1330 5.7398 6.4505 24 6 -0.3406 4.6406 6.2102 25 6 -0.0163 2.6944 2.7713 26 6 0.8160 3.1105 1.5538 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.9501 -0.8400 0.0004 31 1 3.3495 2.8764 2.8577 32 1 3.4953 1.1521 2.4263 33 1 2.4798 1.5323 4.7090 34 1 1.4154 0.6328 3.6008 35 1 0.7376 2.2514 6.0180 36 1 -0.5563 1.5122 5.0444 37 1 -2.4491 2.8205 4.2896 38 1 -3.8962 4.7614 4.7040 39 1 -2.2153 7.7697 9.0921 40 1 -0.7605 6.5555 7.0523 41 1 0.6553 4.5943 6.6253 42 1 -0.4618 1.7162 2.5902 43 1 -0.8046 3.4278 2.9409 44 1 1.1773 4.1300 1.6884 45 1 0.2033 3.0519 0.6542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331346289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:45 Heat of formation + Delta-G solvation = -68.260416 kcal Electronic energy + Delta-G solvation = -27718.991008 eV Core-core repulsion = 23861.874100 eV Total energy + Delta-G solvation = -3857.116908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.27258 -39.02746 -38.46097 -37.02793 -36.19592 -35.87306 -35.02842 -32.25565 -31.95077 -31.03484 -29.02332 -26.88392 -26.75868 -24.79818 -24.34032 -22.78349 -21.88054 -21.42496 -20.15344 -19.16886 -19.12637 -18.57604 -17.43073 -17.15540 -16.45797 -16.31339 -16.12430 -15.98146 -15.65415 -15.44415 -15.31308 -15.06344 -14.70763 -14.65985 -14.20710 -13.85313 -13.74488 -13.61975 -13.58204 -13.31805 -13.27594 -13.08293 -12.95738 -12.68095 -12.64138 -12.58334 -12.46126 -12.21834 -12.08381 -11.91148 -11.77658 -11.35297 -11.17423 -10.96596 -10.59307 -10.18653 -9.27159 -9.22775 -8.98863 -8.60519 -6.28668 -0.49605 0.99809 1.21440 1.38720 1.49251 1.54669 1.82367 2.22229 2.50576 2.71040 3.17020 3.24353 3.63514 3.84677 4.04912 4.13043 4.18999 4.27429 4.33726 4.41359 4.46403 4.50899 4.61221 4.64478 4.70734 4.73486 4.84410 4.87947 4.90562 4.92722 5.03896 5.12194 5.13879 5.17401 5.20675 5.44150 5.49010 5.52525 5.77038 6.00403 6.10100 6.14776 6.18431 6.33578 6.37302 6.45494 6.77348 6.99646 7.10402 8.36600 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023120 B = 0.002451 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.804227 B =11420.273559 C =11648.449130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -1.121 6.121 3 S 2.805 3.195 4 O -1.008 7.008 5 O -1.004 7.004 6 N -1.004 6.004 7 C 0.127 3.873 8 C 0.044 3.956 9 N -0.544 5.544 10 C 0.129 3.871 11 C -0.191 4.191 12 C -0.080 4.080 13 C -0.242 4.242 14 C 0.080 3.920 15 C -0.504 4.504 16 H 0.072 0.928 17 C 0.035 3.965 18 N -0.827 5.827 19 Si 0.977 3.023 20 H -0.263 1.263 21 H -0.267 1.267 22 H -0.260 1.260 23 C -0.191 4.191 24 C -0.085 4.085 25 C 0.044 3.956 26 C 0.128 3.872 27 H 0.106 0.894 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.426 0.574 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.039 0.961 37 H 0.116 0.884 38 H 0.093 0.907 39 H 0.286 0.714 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.049 0.951 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.050 -15.208 -10.819 19.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.884 5.884 3 S 2.812 3.188 4 O -0.991 6.991 5 O -0.988 6.988 6 N -0.845 5.845 7 C 0.001 3.999 8 C -0.085 4.085 9 N -0.269 5.269 10 C 0.002 3.998 11 C -0.193 4.193 12 C -0.099 4.099 13 C -0.262 4.262 14 C 0.078 3.922 15 C -0.534 4.534 16 H 0.090 0.910 17 C -0.179 4.179 18 N -0.454 5.454 19 Si 0.798 3.202 20 H -0.188 1.188 21 H -0.192 1.192 22 H -0.184 1.184 23 C -0.211 4.211 24 C -0.104 4.104 25 C -0.086 4.086 26 C 0.003 3.997 27 H 0.125 0.875 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.261 0.739 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.114 0.886 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.133 0.867 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.119 0.881 42 H 0.067 0.933 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.822 -14.232 -11.258 19.761 hybrid contribution -0.927 -0.105 0.656 1.140 sum 6.895 -14.337 -10.603 19.118 Atomic orbital electron populations 1.21668 0.77569 1.05781 1.01891 1.55463 1.16840 1.24509 1.91609 1.01160 0.72107 0.72932 0.72588 1.93574 1.79629 1.69694 1.56223 1.93573 1.33357 1.84644 1.87260 1.57989 1.40054 1.58332 1.28123 1.21617 0.92040 1.02848 0.83345 1.22514 0.94034 0.92760 0.99228 1.61817 1.14891 1.47951 1.02262 1.20627 0.93968 0.93340 0.91852 1.19282 0.95637 0.98472 1.05876 1.20639 0.93760 0.96808 0.98651 1.21148 0.99609 0.96288 1.09125 1.17938 0.91971 0.92016 0.90325 1.19820 1.15832 1.10571 1.07205 0.91003 1.26696 0.94208 1.03132 0.93851 1.69883 1.32889 1.38102 1.04501 0.85268 0.78768 0.76723 0.79398 1.18756 1.19176 1.18407 1.21223 0.94741 0.99261 1.05827 1.20710 0.97758 0.93902 0.98005 1.22479 0.95357 1.00983 0.89747 1.21529 0.86361 0.93450 0.98407 0.87524 0.91963 0.92028 0.73857 0.90729 0.87688 0.88570 0.93472 0.90538 0.94301 0.86658 0.88876 0.90334 0.88919 0.88106 0.93287 0.90305 0.91331 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 11.16 127.77 1.43 2.24 16 2 N -1.12 -14.61 6.24 -206.53 -1.29 -15.90 16 3 S 2.80 58.32 6.15 -56.49 -0.35 57.97 16 4 O -1.01 -27.69 16.64 -128.00 -2.13 -29.82 16 5 O -1.00 -25.61 16.92 -128.00 -2.17 -27.77 16 6 N -1.00 -20.19 3.39 -512.16 -1.73 -21.92 16 7 C 0.13 2.32 6.53 86.35 0.56 2.89 16 8 C 0.04 0.81 5.62 86.38 0.49 1.29 16 9 N -0.54 -13.79 4.62 -899.81 -4.16 -17.95 16 10 C 0.13 3.67 5.11 85.56 0.44 4.10 16 11 C -0.19 -7.34 4.91 -19.68 -0.10 -7.43 16 12 C -0.08 -3.18 7.82 22.22 0.17 -3.01 16 13 C -0.24 -11.46 9.80 22.73 0.22 -11.24 16 14 C 0.08 4.27 5.56 -21.29 -0.12 4.15 16 15 C -0.50 -27.42 9.05 23.46 0.21 -27.21 16 16 H 0.07 3.79 7.91 -2.91 -0.02 3.76 16 17 C 0.04 1.81 5.14 85.25 0.44 2.25 16 18 N -0.83 -43.70 11.00 21.83 0.24 -43.46 16 19 Si 0.98 38.68 29.59 68.60 2.03 40.71 16 20 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 21 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 22 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 23 C -0.19 -9.96 8.69 22.73 0.20 -9.76 16 24 C -0.08 -3.77 9.67 22.22 0.21 -3.56 16 25 C 0.04 1.04 5.33 86.38 0.46 1.50 16 26 C 0.13 2.87 6.53 86.35 0.56 3.43 16 27 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.66 6.95 -2.39 -0.02 0.64 16 29 H 0.06 0.74 8.10 -2.39 -0.02 0.72 16 30 H 0.43 3.74 8.96 -96.75 -0.87 2.87 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.11 1.57 7.22 -2.39 -0.02 1.55 16 33 H 0.10 1.58 7.99 -2.39 -0.02 1.56 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.08 2.06 7.91 -2.38 -0.02 2.05 16 36 H 0.04 1.01 8.06 -2.39 -0.02 0.99 16 37 H 0.12 3.79 7.92 -2.91 -0.02 3.76 16 38 H 0.09 4.21 8.06 -2.91 -0.02 4.19 16 39 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 40 H 0.09 5.16 6.22 -2.91 -0.02 5.14 16 41 H 0.10 4.09 8.06 -2.91 -0.02 4.07 16 42 H 0.05 0.97 6.95 -2.39 -0.02 0.96 16 43 H 0.08 2.28 5.65 -2.39 -0.01 2.27 16 44 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.10 1.98 7.22 -2.39 -0.02 1.96 16 Total: -1.00 -68.48 370.84 -4.24 -72.72 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.14 Total: 25.76 kcal Atomic # 6 Polarization: -45.53 SS G_CDS: 5.18 Total: -40.34 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -6.94 Total: -99.23 kcal Atomic # 8 Polarization: -53.29 SS G_CDS: -4.30 Total: -57.59 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Atomic # 16 Polarization: 58.32 SS G_CDS: -0.35 Total: 57.97 kcal Total: -68.48 -4.24 -72.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331346289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.460 kcal (2) G-P(sol) polarization free energy of solvation -68.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds