Wall clock time and date at job start Sat Apr 11 2020 05:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 109.46879 * 2 1 4 4 C 1.46500 * 119.99977 * 274.99379 * 3 2 1 5 5 C 1.50701 * 109.47694 * 275.41911 * 4 3 2 6 6 H 1.08003 * 119.99817 * 5.03084 * 5 4 3 7 7 C 1.37874 * 120.00278 * 185.02942 * 5 4 3 8 8 N 1.31513 * 119.99978 * 184.98721 * 7 5 4 9 9 Si 1.86800 * 119.99986 * 4.98452 * 7 5 4 10 10 H 1.48498 * 109.47123 * 89.99899 * 9 7 5 11 11 H 1.48503 * 109.47405 * 210.00318 * 9 7 5 12 12 H 1.48498 * 109.47181 * 330.00022 * 9 7 5 13 13 S 1.65602 * 120.00255 * 95.00153 * 3 2 1 14 14 O 1.42106 * 106.39600 * 341.56353 * 13 3 2 15 15 O 1.42098 * 106.40235 * 208.64729 * 13 3 2 16 16 N 1.65598 * 107.21925 * 95.10233 * 13 3 2 17 17 C 1.47424 * 125.64592 * 94.88823 * 16 13 3 18 18 C 1.54908 * 104.83275 * 204.16935 * 17 16 13 19 19 C 1.55152 * 101.58192 * 322.99433 * 18 17 16 20 20 C 1.47018 * 125.64911 * 274.93693 * 16 13 3 21 21 H 1.09004 * 109.88287 * 59.48514 * 20 16 13 22 22 C 1.50698 * 110.01615 * 298.38772 * 20 16 13 23 23 C 1.38650 * 120.78721 * 315.87868 * 22 20 16 24 24 C 1.38211 * 119.16305 * 179.75031 * 23 22 20 25 25 N 1.31874 * 120.75991 * 0.53407 * 24 23 22 26 26 C 1.31871 * 121.72486 * 359.73877 * 25 24 23 27 27 C 1.38198 * 120.76646 * 359.97438 * 26 25 24 28 28 H 1.09009 * 109.46997 * 60.00479 * 1 2 3 29 29 H 1.09001 * 109.46767 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47627 * 300.00321 * 1 2 3 31 31 H 1.09003 * 109.47768 * 240.00113 * 2 1 3 32 32 H 1.09002 * 109.47374 * 119.99518 * 2 1 3 33 33 H 1.09000 * 109.47176 * 35.42313 * 4 3 2 34 34 H 1.08998 * 109.47245 * 155.41367 * 4 3 2 35 35 H 0.97005 * 119.99662 * 185.00173 * 8 7 5 36 36 H 1.09006 * 110.36475 * 85.33586 * 17 16 13 37 37 H 1.08999 * 110.46056 * 323.05840 * 17 16 13 38 38 H 1.09000 * 111.00541 * 204.91488 * 18 17 16 39 39 H 1.09001 * 111.00152 * 81.06778 * 18 17 16 40 40 H 1.09007 * 110.72017 * 277.13554 * 19 18 17 41 41 H 1.09000 * 110.87680 * 153.93087 * 19 18 17 42 42 H 1.08007 * 120.42055 * 359.97438 * 23 22 20 43 43 H 1.07992 * 119.61672 * 180.28797 * 24 23 22 44 44 H 1.07999 * 119.61119 * 180.02562 * 26 25 24 45 45 H 1.07998 * 120.42126 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4905 1.7810 -1.8874 6 1 4.1306 1.0382 -1.4345 7 6 3.8924 2.4292 -3.0359 8 7 5.0084 2.0750 -3.6348 9 14 2.8515 3.8106 -3.7416 10 1 3.2845 5.1050 -3.1566 11 1 3.0193 3.8531 -5.2165 12 1 1.4233 3.5719 -3.4126 13 16 2.4121 2.1203 1.4287 14 8 1.7825 1.3677 2.4565 15 8 2.1899 3.5105 1.2359 16 7 4.0433 1.9329 1.6441 17 6 5.0784 2.9102 1.2610 18 6 6.3678 2.0713 1.0787 19 6 6.2201 1.0226 2.2126 20 6 4.6991 0.7640 2.2482 21 1 4.4619 -0.1319 1.6744 22 6 4.2412 0.5952 3.6740 23 6 4.1482 1.6870 4.5235 24 6 3.7194 1.4945 5.8233 25 7 3.4109 0.2891 6.2602 26 6 3.4927 -0.7725 5.4821 27 6 3.9081 -0.6563 4.1691 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3575 1.8153 -1.9427 34 1 2.0995 3.1805 -1.0747 35 1 5.3286 2.5775 -4.4003 36 1 5.2146 3.6481 2.0517 37 1 4.8105 3.4022 0.3260 38 1 7.2569 2.6842 1.2267 39 1 6.3856 1.5897 0.1010 40 1 6.5641 1.4311 3.1629 41 1 6.7611 0.1083 1.9690 42 1 4.4042 2.6760 4.1730 43 1 3.6399 2.3404 6.4898 44 1 3.2312 -1.7438 5.8753 45 1 3.9726 -1.5294 3.5367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336917153.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:52 Heat of formation + Delta-G solvation = -33.281316 kcal Electronic energy + Delta-G solvation = -29577.959031 eV Core-core repulsion = 25722.358930 eV Total energy + Delta-G solvation = -3855.600101 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.27617 -38.12059 -36.78414 -36.20799 -35.32024 -32.80647 -32.69605 -31.11200 -30.66793 -30.26860 -28.28993 -27.18192 -23.61380 -23.32588 -22.96424 -21.80120 -21.35450 -20.89519 -18.53668 -17.47400 -17.26357 -16.83517 -16.57126 -15.93055 -15.72545 -15.47383 -15.10789 -14.35285 -14.17906 -13.91739 -13.61599 -13.53676 -13.49603 -13.18572 -13.01195 -12.73857 -12.64032 -12.38689 -12.05103 -11.93746 -11.71340 -11.55809 -11.52856 -11.40875 -11.24354 -11.15645 -11.04150 -10.89905 -10.61561 -10.52350 -10.42879 -10.22996 -9.66709 -9.56902 -9.35381 -9.03719 -8.77215 -8.66709 -8.15526 -6.22666 -4.22963 1.07694 1.25306 1.37418 3.21670 3.28641 3.33837 3.37489 3.87875 4.02681 4.30393 4.48578 4.53826 4.59368 4.80755 4.87958 5.07922 5.13703 5.17605 5.23136 5.24926 5.32668 5.49744 5.64629 5.68704 5.69880 5.71481 5.80315 5.87148 5.93656 5.98173 6.01821 6.08530 6.16077 6.21134 6.33502 6.43923 6.51689 6.53010 6.61529 6.69074 6.79725 6.81835 7.06510 7.36182 7.49925 8.05172 8.35028 8.81335 9.38794 10.88973 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015429 B = 0.004902 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.280096 B = 5710.762684 C = 6461.636361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 N -0.986 5.986 4 C 0.215 3.785 5 C -0.538 4.538 6 H 0.082 0.918 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.863 3.137 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.264 1.264 13 S 2.795 3.205 14 O -0.982 6.982 15 O -0.980 6.980 16 N -1.003 6.003 17 C 0.125 3.875 18 C -0.126 4.126 19 C -0.116 4.116 20 C 0.192 3.808 21 H 0.085 0.915 22 C -0.039 4.039 23 C -0.157 4.157 24 C 0.097 3.903 25 N -0.490 5.490 26 C 0.098 3.902 27 C -0.156 4.156 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.035 0.965 34 H 0.039 0.961 35 H 0.265 0.735 36 H 0.057 0.943 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.129 0.871 43 H 0.151 0.849 44 H 0.152 0.848 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.233 -4.235 12.127 12.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.003 3.997 3 N -0.827 5.827 4 C 0.092 3.908 5 C -0.576 4.576 6 H 0.100 0.900 7 C -0.124 4.124 8 N -0.529 5.529 9 Si 0.689 3.311 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.189 1.189 13 S 2.805 3.195 14 O -0.966 6.966 15 O -0.965 6.965 16 N -0.840 5.840 17 C 0.000 4.000 18 C -0.165 4.165 19 C -0.155 4.155 20 C 0.085 3.915 21 H 0.103 0.897 22 C -0.048 4.048 23 C -0.177 4.177 24 C -0.059 4.059 25 N -0.200 5.200 26 C -0.059 4.059 27 C -0.176 4.176 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.147 0.853 43 H 0.169 0.831 44 H 0.170 0.830 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.329 -3.848 13.338 13.886 hybrid contribution 0.021 0.697 -1.807 1.937 sum 0.350 -3.151 11.531 11.959 Atomic orbital electron populations 1.22204 0.96892 1.01614 1.02169 1.21021 0.93583 0.82618 1.02526 1.57629 1.78433 1.23081 1.23520 1.19563 0.98348 0.91816 0.81103 1.21433 1.02119 1.24715 1.09374 0.90002 1.24809 0.95140 0.96780 0.95706 1.69895 1.21993 1.39088 1.21877 0.87057 0.81812 0.83530 0.78678 1.19693 1.21027 1.18883 1.01519 0.71832 0.73282 0.72879 1.93577 1.73788 1.73230 1.56053 1.93561 1.84212 1.32111 1.86577 1.59128 1.24352 1.26509 1.74059 1.21945 0.86917 0.90567 1.00571 1.22776 0.96998 0.97051 0.99635 1.22657 0.92611 1.00442 0.99773 1.20132 0.93666 0.89614 0.88069 0.89732 1.20644 0.94653 0.93544 0.96006 1.21924 1.01154 0.99707 0.94902 1.22640 0.94705 0.94769 0.93835 1.67613 1.14669 0.99389 1.38285 1.22630 0.95404 0.97359 0.90512 1.21923 1.00686 0.97672 0.97354 0.92249 0.92050 0.92778 0.89957 0.91539 0.94727 0.94321 0.92493 0.92468 0.89086 0.90432 0.89095 0.90863 0.90069 0.85273 0.83120 0.83030 0.84915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 10.24 37.16 0.38 -2.18 16 2 C 0.13 2.16 6.08 -4.04 -0.02 2.14 16 3 N -0.99 -19.52 2.83 -115.66 -0.33 -19.85 16 4 C 0.22 4.89 4.49 -5.19 -0.02 4.87 16 5 C -0.54 -13.49 9.93 -34.44 -0.34 -13.83 16 6 H 0.08 2.17 8.06 -52.48 -0.42 1.75 16 7 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.89 -24.74 13.95 55.43 0.77 -23.96 16 9 Si 0.86 20.22 27.36 -169.99 -4.65 15.57 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 12 H -0.26 -6.01 6.75 56.52 0.38 -5.63 16 13 S 2.79 54.67 6.29 -107.50 -0.68 53.99 16 14 O -0.98 -19.45 15.14 -57.17 -0.87 -20.32 16 15 O -0.98 -22.08 16.33 -57.17 -0.93 -23.02 16 16 N -1.00 -16.65 2.98 -105.64 -0.32 -16.96 16 17 C 0.13 1.96 6.94 -2.53 -0.02 1.94 16 18 C -0.13 -1.67 7.08 -24.59 -0.17 -1.85 16 19 C -0.12 -1.34 6.44 -24.90 -0.16 -1.50 16 20 C 0.19 2.67 3.32 -68.11 -0.23 2.44 16 21 H 0.08 1.14 8.03 -51.93 -0.42 0.73 16 22 C -0.04 -0.54 3.38 -104.32 -0.35 -0.89 16 23 C -0.16 -2.17 9.09 -39.44 -0.36 -2.53 16 24 C 0.10 1.31 11.18 -17.54 -0.20 1.11 16 25 N -0.49 -7.01 10.36 -13.25 -0.14 -7.14 16 26 C 0.10 1.24 11.18 -17.55 -0.20 1.04 16 27 C -0.16 -1.96 9.78 -39.44 -0.39 -2.35 16 28 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 32 H 0.07 1.02 7.47 -51.93 -0.39 0.63 16 33 H 0.03 0.78 7.74 -51.93 -0.40 0.38 16 34 H 0.04 0.93 5.97 -51.93 -0.31 0.62 16 35 H 0.27 7.00 8.32 -40.82 -0.34 6.66 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.07 0.77 7.67 -51.93 -0.40 0.37 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.13 1.67 7.94 -52.48 -0.42 1.26 16 43 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 44 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 45 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 379.43 15.07 5.72 5.72 Total: -1.00 -31.63 379.43 -10.57 -42.20 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.98 Total: 3.37 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -2.17 Total: -9.61 kcal Atomic # 7 Polarization: -67.91 SS G_CDS: -0.01 Total: -67.92 kcal Atomic # 8 Polarization: -41.54 SS G_CDS: -1.80 Total: -43.33 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.65 Total: 15.57 kcal Atomic # 16 Polarization: 54.67 SS G_CDS: -0.68 Total: 53.99 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.63 -10.57 -42.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336917153.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.922 kcal (2) G-P(sol) polarization free energy of solvation -31.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds