Wall clock time and date at job start Sat Apr 11 2020 05:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.47351 * 2 1 4 4 C 1.46497 * 120.00189 * 84.99965 * 3 2 1 5 5 C 1.50694 * 109.47115 * 275.00116 * 4 3 2 6 6 H 1.08000 * 120.00563 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 S 1.65605 * 119.99847 * 265.00016 * 3 2 1 14 14 O 1.42098 * 106.40230 * 23.54106 * 13 3 2 15 15 O 1.42103 * 106.39983 * 156.45849 * 13 3 2 16 16 N 1.65601 * 107.21978 * 270.00091 * 13 3 2 17 17 C 1.47416 * 125.65026 * 90.02353 * 16 13 3 18 18 C 1.54909 * 104.83376 * 155.83513 * 17 16 13 19 19 C 1.55150 * 101.58044 * 37.01226 * 18 17 16 20 20 C 1.47018 * 125.64770 * 269.71816 * 16 13 3 21 21 H 1.09001 * 109.88181 * 300.51583 * 20 16 13 22 22 C 1.50704 * 109.88580 * 61.67561 * 20 16 13 23 23 C 1.38653 * 120.78734 * 39.71925 * 22 20 16 24 24 C 1.38202 * 119.16247 * 179.79999 * 23 22 20 25 25 N 1.31874 * 120.76334 * 0.49000 * 24 23 22 26 26 C 1.31871 * 121.72660 * 359.73475 * 25 24 23 27 27 C 1.38209 * 120.76229 * 0.03000 * 26 25 24 28 28 H 1.09002 * 109.46652 * 299.99909 * 1 2 3 29 29 H 1.09001 * 109.46901 * 60.00002 * 1 2 3 30 30 H 1.08999 * 109.47068 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47031 * 239.99419 * 2 1 3 32 32 H 1.09001 * 109.46901 * 119.99997 * 2 1 3 33 33 H 1.09007 * 109.47078 * 154.99755 * 4 3 2 34 34 H 1.09003 * 109.46733 * 35.00478 * 4 3 2 35 35 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 36 36 H 1.09005 * 110.36723 * 274.67751 * 17 16 13 37 37 H 1.09001 * 110.36792 * 36.88896 * 17 16 13 38 38 H 1.09002 * 110.99924 * 155.08320 * 18 17 16 39 39 H 1.08992 * 111.00621 * 278.93263 * 18 17 16 40 40 H 1.09005 * 110.72203 * 82.86047 * 19 18 17 41 41 H 1.09002 * 110.72010 * 205.95932 * 19 18 17 42 42 H 1.08000 * 120.41500 * 359.97438 * 23 22 20 43 43 H 1.07998 * 119.61825 * 180.20601 * 24 23 22 44 44 H 1.07993 * 119.61895 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.41580 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1086 1.2638 5 6 0.8362 2.7288 1.6355 6 1 -0.0225 2.5949 0.9943 7 6 0.7228 3.4682 2.7939 8 7 1.7685 3.6317 3.5745 9 14 -0.9159 4.2375 3.2542 10 1 -0.7741 4.9748 4.5354 11 1 -1.3389 5.1778 2.1856 12 1 -1.9377 3.1709 3.4080 13 16 2.4123 2.1201 -1.4287 14 8 1.6869 1.4414 -2.4448 15 8 2.3058 3.5185 -1.1999 16 7 4.0145 1.8135 -1.7139 17 6 4.5491 0.6592 -2.4588 18 6 5.9331 1.1265 -2.9744 19 6 6.4342 1.9873 -1.7848 20 6 5.1390 2.6508 -1.2713 21 1 5.0424 3.6526 -1.6897 22 6 5.1644 2.7213 0.2339 23 6 4.8857 1.6008 1.0016 24 6 4.9226 1.7024 2.3794 25 7 5.2089 2.8494 2.9638 26 6 5.4747 3.9361 2.2656 27 6 5.4613 3.9094 0.8838 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.9082 2.8917 1.1512 34 1 2.4691 1.4182 2.0480 35 1 1.6889 4.1522 4.3892 36 1 4.6608 -0.2002 -1.7977 37 1 3.8950 0.4113 -3.2948 38 1 6.5932 0.2763 -3.1467 39 1 5.8309 1.7289 -3.8769 40 1 6.8811 1.3583 -1.0148 41 1 7.1446 2.7403 -2.1260 42 1 4.6456 0.6600 0.5288 43 1 4.7100 0.8335 2.9845 44 1 5.7045 4.8577 2.7795 45 1 5.6794 4.8028 0.3176 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336917154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:56 Heat of formation + Delta-G solvation = -26.796458 kcal Electronic energy + Delta-G solvation = -30337.384433 eV Core-core repulsion = 26482.065537 eV Total energy + Delta-G solvation = -3855.318896 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.04986 -38.12993 -36.64624 -36.00586 -35.14596 -32.54767 -32.50878 -30.95309 -30.61243 -29.70577 -28.27472 -26.66593 -23.45904 -22.89298 -22.72053 -21.99287 -21.58770 -20.83244 -18.51805 -17.32326 -17.10165 -16.50508 -16.28020 -15.74772 -15.34776 -15.15129 -15.00267 -14.41496 -14.02298 -13.69720 -13.51514 -13.28758 -13.18061 -13.07549 -12.95975 -12.72916 -12.49098 -12.16015 -11.74771 -11.57930 -11.52500 -11.44625 -11.29405 -11.23513 -11.20799 -11.09060 -10.95298 -10.93427 -10.75931 -10.42604 -10.37409 -9.87451 -9.64028 -9.22262 -8.83779 -8.73451 -8.47314 -8.31525 -7.98238 -5.93843 -3.98221 1.13485 1.74742 1.77527 3.36889 3.40796 3.44885 3.49268 4.09654 4.38494 4.40054 4.51081 4.65346 4.70980 4.99768 5.07098 5.10779 5.20592 5.36145 5.40877 5.42052 5.46556 5.58175 5.68233 5.69040 5.72174 5.77555 5.83356 5.88003 5.93708 6.08890 6.12809 6.13814 6.23198 6.30638 6.42657 6.47690 6.54083 6.73127 6.83320 7.00230 7.26006 7.30595 7.50078 7.69508 7.99600 8.31753 8.65397 9.00888 9.64838 11.11766 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011789 B = 0.006660 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.558887 B = 4203.364630 C = 5570.163073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.136 3.864 3 N -0.990 5.990 4 C 0.262 3.738 5 C -0.533 4.533 6 H 0.057 0.943 7 C 0.066 3.934 8 N -0.877 5.877 9 Si 0.887 3.113 10 H -0.287 1.287 11 H -0.278 1.278 12 H -0.278 1.278 13 S 2.787 3.213 14 O -0.994 6.994 15 O -0.957 6.957 16 N -1.018 6.018 17 C 0.115 3.885 18 C -0.128 4.128 19 C -0.117 4.117 20 C 0.196 3.804 21 H 0.087 0.913 22 C -0.076 4.076 23 C -0.150 4.150 24 C 0.119 3.881 25 N -0.456 5.456 26 C 0.111 3.889 27 C -0.158 4.158 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.032 0.968 35 H 0.261 0.739 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.125 0.875 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.907 -6.896 -9.038 16.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.009 3.991 3 N -0.832 5.832 4 C 0.140 3.860 5 C -0.572 4.572 6 H 0.075 0.925 7 C -0.137 4.137 8 N -0.515 5.515 9 Si 0.715 3.285 10 H -0.213 1.213 11 H -0.203 1.203 12 H -0.204 1.204 13 S 2.797 3.203 14 O -0.978 6.978 15 O -0.941 6.941 16 N -0.855 5.855 17 C -0.010 4.010 18 C -0.167 4.167 19 C -0.156 4.156 20 C 0.089 3.911 21 H 0.105 0.895 22 C -0.085 4.085 23 C -0.170 4.170 24 C -0.039 4.039 25 N -0.164 5.164 26 C -0.046 4.046 27 C -0.178 4.178 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.143 0.857 43 H 0.163 0.837 44 H 0.164 0.836 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.305 -6.238 -8.488 15.452 hybrid contribution -1.052 0.300 -0.252 1.123 sum 10.253 -5.938 -8.740 14.723 Atomic orbital electron populations 1.22249 0.96367 1.00767 1.03658 1.20934 0.94882 0.82429 1.00807 1.57836 1.77824 1.22944 1.24566 1.19264 0.97466 0.90799 0.78463 1.21463 0.96378 1.32480 1.06922 0.92457 1.24889 0.96402 0.96057 0.96367 1.69936 1.28526 1.39822 1.13228 0.86738 0.84535 0.79572 0.77610 1.21316 1.20333 1.20415 1.01811 0.71750 0.73718 0.72975 1.93524 1.69615 1.76663 1.57983 1.93619 1.84843 1.30093 1.85574 1.59602 1.23495 1.34262 1.68116 1.21986 0.95277 0.88348 0.95436 1.22763 0.95845 0.99958 0.98113 1.22671 0.95616 0.99409 0.97867 1.20106 0.86440 0.95132 0.89436 0.89512 1.20436 0.98621 0.94016 0.95467 1.21796 1.01013 0.98847 0.95332 1.22476 0.94034 0.95628 0.91729 1.67586 1.09125 0.98934 1.40767 1.22514 0.94751 0.96665 0.90645 1.21831 1.02177 0.97557 0.96270 0.90243 0.92952 0.93142 0.92424 0.91193 0.93905 0.95036 0.92889 0.91873 0.90163 0.90080 0.90617 0.90289 0.90104 0.85715 0.83735 0.83613 0.85547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 9.83 37.16 0.37 -2.70 16 2 C 0.14 2.34 6.09 -4.04 -0.02 2.32 16 3 N -0.99 -20.24 2.40 -115.67 -0.28 -20.51 16 4 C 0.26 6.29 2.69 -5.20 -0.01 6.28 16 5 C -0.53 -14.75 8.41 -34.44 -0.29 -15.04 16 6 H 0.06 1.61 6.89 -52.49 -0.36 1.25 16 7 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 8 N -0.88 -24.89 13.29 55.43 0.74 -24.16 16 9 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 13 S 2.79 56.78 5.98 -107.50 -0.64 56.13 16 14 O -0.99 -21.08 16.43 -57.17 -0.94 -22.02 16 15 O -0.96 -23.48 16.69 -57.17 -0.95 -24.44 16 16 N -1.02 -15.54 2.81 -105.65 -0.30 -15.83 16 17 C 0.12 1.31 7.11 -2.53 -0.02 1.29 16 18 C -0.13 -1.10 7.08 -24.59 -0.17 -1.28 16 19 C -0.12 -1.13 6.45 -24.90 -0.16 -1.29 16 20 C 0.20 2.71 3.07 -68.11 -0.21 2.51 16 21 H 0.09 1.23 8.06 -51.93 -0.42 0.81 16 22 C -0.08 -1.20 3.46 -104.32 -0.36 -1.56 16 23 C -0.15 -2.40 6.17 -39.44 -0.24 -2.64 16 24 C 0.12 2.09 9.16 -17.55 -0.16 1.93 16 25 N -0.46 -8.78 10.36 -13.25 -0.14 -8.91 16 26 C 0.11 1.96 11.18 -17.55 -0.20 1.76 16 27 C -0.16 -2.57 9.58 -39.44 -0.38 -2.95 16 28 H 0.08 1.60 6.59 -51.93 -0.34 1.26 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.86 7.61 -51.93 -0.40 0.46 16 32 H 0.07 1.10 8.00 -51.93 -0.42 0.68 16 33 H 0.04 1.11 4.97 -51.92 -0.26 0.85 16 34 H 0.03 0.78 6.68 -51.93 -0.35 0.43 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.92 7.78 -51.93 -0.40 0.52 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.74 7.80 -51.93 -0.41 0.34 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.12 1.79 7.81 -52.49 -0.41 1.38 16 43 H 0.15 2.33 8.06 -52.49 -0.42 1.91 16 44 H 0.15 2.25 8.06 -52.49 -0.42 1.83 16 45 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 368.06 15.07 5.55 5.55 Total: -1.00 -34.20 368.06 -10.64 -44.84 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.70 Total: 1.93 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -1.96 Total: -9.61 kcal Atomic # 7 Polarization: -69.44 SS G_CDS: 0.03 Total: -69.42 kcal Atomic # 8 Polarization: -44.57 SS G_CDS: -1.89 Total: -46.46 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 56.78 SS G_CDS: -0.64 Total: 56.13 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.20 -10.64 -44.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336917154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.046 kcal (2) G-P(sol) polarization free energy of solvation -34.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds