Wall clock time and date at job start Sat Apr 11 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.47351 * 2 1 4 4 C 1.46497 * 120.00189 * 84.99965 * 3 2 1 5 5 C 1.50694 * 109.47115 * 275.00116 * 4 3 2 6 6 H 1.08000 * 120.00563 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 S 1.65605 * 119.99847 * 265.00016 * 3 2 1 14 14 O 1.42098 * 106.40230 * 23.54106 * 13 3 2 15 15 O 1.42103 * 106.39983 * 156.45849 * 13 3 2 16 16 N 1.65601 * 107.21978 * 270.00091 * 13 3 2 17 17 C 1.47416 * 125.65026 * 90.02353 * 16 13 3 18 18 C 1.54909 * 104.83376 * 155.83513 * 17 16 13 19 19 C 1.55150 * 101.58044 * 37.01226 * 18 17 16 20 20 C 1.47018 * 125.64770 * 269.71816 * 16 13 3 21 21 H 1.09001 * 109.88181 * 300.51583 * 20 16 13 22 22 C 1.50704 * 109.88580 * 61.67561 * 20 16 13 23 23 C 1.38653 * 120.78734 * 39.71925 * 22 20 16 24 24 C 1.38202 * 119.16247 * 179.79999 * 23 22 20 25 25 N 1.31874 * 120.76334 * 0.49000 * 24 23 22 26 26 C 1.31871 * 121.72660 * 359.73475 * 25 24 23 27 27 C 1.38209 * 120.76229 * 0.03000 * 26 25 24 28 28 H 1.09002 * 109.46652 * 299.99909 * 1 2 3 29 29 H 1.09001 * 109.46901 * 60.00002 * 1 2 3 30 30 H 1.08999 * 109.47068 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47031 * 239.99419 * 2 1 3 32 32 H 1.09001 * 109.46901 * 119.99997 * 2 1 3 33 33 H 1.09007 * 109.47078 * 154.99755 * 4 3 2 34 34 H 1.09003 * 109.46733 * 35.00478 * 4 3 2 35 35 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 36 36 H 1.09005 * 110.36723 * 274.67751 * 17 16 13 37 37 H 1.09001 * 110.36792 * 36.88896 * 17 16 13 38 38 H 1.09002 * 110.99924 * 155.08320 * 18 17 16 39 39 H 1.08992 * 111.00621 * 278.93263 * 18 17 16 40 40 H 1.09005 * 110.72203 * 82.86047 * 19 18 17 41 41 H 1.09002 * 110.72010 * 205.95932 * 19 18 17 42 42 H 1.08000 * 120.41500 * 359.97438 * 23 22 20 43 43 H 1.07998 * 119.61825 * 180.20601 * 24 23 22 44 44 H 1.07993 * 119.61895 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.41580 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1086 1.2638 5 6 0.8362 2.7288 1.6355 6 1 -0.0225 2.5949 0.9943 7 6 0.7228 3.4682 2.7939 8 7 1.7685 3.6317 3.5745 9 14 -0.9159 4.2375 3.2542 10 1 -0.7741 4.9748 4.5354 11 1 -1.3389 5.1778 2.1856 12 1 -1.9377 3.1709 3.4080 13 16 2.4123 2.1201 -1.4287 14 8 1.6869 1.4414 -2.4448 15 8 2.3058 3.5185 -1.1999 16 7 4.0145 1.8135 -1.7139 17 6 4.5491 0.6592 -2.4588 18 6 5.9331 1.1265 -2.9744 19 6 6.4342 1.9873 -1.7848 20 6 5.1390 2.6508 -1.2713 21 1 5.0424 3.6526 -1.6897 22 6 5.1644 2.7213 0.2339 23 6 4.8857 1.6008 1.0016 24 6 4.9226 1.7024 2.3794 25 7 5.2089 2.8494 2.9638 26 6 5.4747 3.9361 2.2656 27 6 5.4613 3.9094 0.8838 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.9082 2.8917 1.1512 34 1 2.4691 1.4182 2.0480 35 1 1.6889 4.1522 4.3892 36 1 4.6608 -0.2002 -1.7977 37 1 3.8950 0.4113 -3.2948 38 1 6.5932 0.2763 -3.1467 39 1 5.8309 1.7289 -3.8769 40 1 6.8811 1.3583 -1.0148 41 1 7.1446 2.7403 -2.1260 42 1 4.6456 0.6600 0.5288 43 1 4.7100 0.8335 2.9845 44 1 5.7045 4.8577 2.7795 45 1 5.6794 4.8028 0.3176 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336917154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:55 Heat of formation + Delta-G solvation = -50.369621 kcal Electronic energy + Delta-G solvation = -30338.406642 eV Core-core repulsion = 26482.065537 eV Total energy + Delta-G solvation = -3856.341105 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.27186 -39.21245 -38.32359 -37.64126 -36.85835 -34.56379 -33.74200 -32.12305 -31.76208 -31.28221 -29.31070 -28.59314 -24.68420 -24.51487 -24.17550 -23.47331 -22.62377 -21.90251 -19.88224 -18.89008 -18.62728 -18.27668 -17.69955 -17.21290 -16.77893 -16.44611 -16.35366 -16.11294 -15.46023 -14.98188 -14.88633 -14.70455 -14.44209 -14.31318 -14.19449 -14.11787 -13.95506 -13.52737 -13.45422 -13.18845 -13.13421 -13.00611 -12.84942 -12.78192 -12.70525 -12.47353 -12.29230 -12.22969 -12.12325 -12.00851 -11.63012 -11.54376 -11.49061 -10.55066 -10.45192 -10.11207 -9.95302 -9.84223 -9.63830 -8.06807 -6.16836 -0.40560 0.44994 0.49954 1.35927 1.38427 1.44682 2.04986 2.42146 2.60846 3.09735 3.20210 3.24458 3.59471 3.69967 3.84052 3.87651 4.01672 4.06848 4.23444 4.30945 4.42367 4.46468 4.47807 4.54049 4.64564 4.71873 4.78668 4.88794 4.94645 4.96376 5.00457 5.05652 5.08681 5.17990 5.21376 5.22550 5.31135 5.36274 5.48332 5.51719 5.58973 5.65535 5.81573 5.99275 6.05627 6.25449 6.86799 7.33388 7.48028 8.95427 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011789 B = 0.006660 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.558887 B = 4203.364630 C = 5570.163073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.127 3.873 3 N -0.995 5.995 4 C 0.287 3.713 5 C -0.551 4.551 6 H 0.043 0.957 7 C 0.023 3.977 8 N -0.892 5.892 9 Si 0.935 3.065 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.270 1.270 13 S 2.798 3.202 14 O -1.007 7.007 15 O -1.008 7.008 16 N -1.013 6.013 17 C 0.101 3.899 18 C -0.116 4.116 19 C -0.106 4.106 20 C 0.188 3.812 21 H 0.080 0.920 22 C -0.079 4.079 23 C -0.146 4.146 24 C 0.101 3.899 25 N -0.487 5.487 26 C 0.091 3.909 27 C -0.167 4.167 28 H 0.049 0.951 29 H 0.034 0.966 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.027 0.973 34 H 0.025 0.975 35 H 0.260 0.740 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.114 0.886 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.143 0.857 43 H 0.152 0.848 44 H 0.157 0.843 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.185 -8.541 -10.540 18.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.836 5.836 4 C 0.164 3.836 5 C -0.591 4.591 6 H 0.062 0.938 7 C -0.179 4.179 8 N -0.531 5.531 9 Si 0.762 3.238 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.195 1.195 13 S 2.810 3.190 14 O -0.991 6.991 15 O -0.992 6.992 16 N -0.853 5.853 17 C -0.023 4.023 18 C -0.154 4.154 19 C -0.145 4.145 20 C 0.082 3.918 21 H 0.098 0.902 22 C -0.089 4.089 23 C -0.166 4.166 24 C -0.056 4.056 25 N -0.196 5.196 26 C -0.065 4.065 27 C -0.187 4.187 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.045 0.955 34 H 0.043 0.957 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.132 0.868 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.121 0.879 42 H 0.160 0.840 43 H 0.169 0.831 44 H 0.174 0.826 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 12.564 -7.908 -9.999 17.899 hybrid contribution -1.431 0.776 0.143 1.634 sum 11.133 -7.132 -9.856 16.491 Atomic orbital electron populations 1.22223 0.97085 1.02390 1.01219 1.21237 0.94405 0.81098 1.03120 1.57730 1.78736 1.23993 1.23170 1.18732 0.95049 0.90228 0.79611 1.21815 0.97588 1.32848 1.06822 0.93837 1.25514 0.99056 0.96677 0.96623 1.70034 1.29589 1.40175 1.13271 0.85976 0.81735 0.78871 0.77202 1.20498 1.21198 1.19465 1.01117 0.72772 0.72504 0.72652 1.93495 1.70934 1.76521 1.58152 1.93549 1.86204 1.33326 1.86166 1.59155 1.22003 1.35945 1.68215 1.22409 0.96725 0.87573 0.95552 1.22787 0.94262 1.00888 0.97504 1.22679 0.93475 0.99969 0.98352 1.20382 0.87955 0.95361 0.88098 0.90162 1.20747 0.97668 0.93712 0.96766 1.21924 1.00328 0.99669 0.94717 1.22699 0.94572 0.95565 0.92784 1.67534 1.10346 0.99836 1.41918 1.22804 0.95313 0.96863 0.91557 1.22113 1.01861 0.98671 0.96042 0.93217 0.94725 0.89532 0.89397 0.89439 0.95523 0.95671 0.93114 0.89803 0.90300 0.86789 0.90090 0.89548 0.87892 0.83955 0.83120 0.82582 0.83634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.94 9.83 71.98 0.71 -5.24 16 2 C 0.13 4.16 6.09 86.38 0.53 4.68 16 3 N -1.00 -40.23 2.40 -519.86 -1.25 -41.48 16 4 C 0.29 13.94 2.69 85.63 0.23 14.17 16 5 C -0.55 -31.11 8.41 25.60 0.22 -30.89 16 6 H 0.04 2.52 6.89 -2.91 -0.02 2.50 16 7 C 0.02 1.29 5.46 84.66 0.46 1.75 16 8 N -0.89 -51.41 13.29 21.45 0.28 -51.13 16 9 Si 0.94 45.79 29.54 68.60 2.03 47.82 16 10 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 11 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 12 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 13 S 2.80 112.69 5.98 -56.49 -0.34 112.35 16 14 O -1.01 -41.88 16.43 -128.00 -2.10 -43.98 16 15 O -1.01 -50.39 16.69 -128.00 -2.14 -52.53 16 16 N -1.01 -28.94 2.81 -488.15 -1.37 -30.31 16 17 C 0.10 1.95 7.11 86.86 0.62 2.57 16 18 C -0.12 -1.47 7.08 31.98 0.23 -1.24 16 19 C -0.11 -1.64 6.45 31.78 0.21 -1.43 16 20 C 0.19 4.86 3.07 44.59 0.14 4.99 16 21 H 0.08 2.18 8.06 -2.39 -0.02 2.16 16 22 C -0.08 -2.44 3.46 -19.67 -0.07 -2.51 16 23 C -0.15 -4.56 6.17 22.36 0.14 -4.42 16 24 C 0.10 3.57 9.16 84.68 0.78 4.35 16 25 N -0.49 -19.15 10.36 -195.84 -2.03 -21.18 16 26 C 0.09 3.27 11.18 84.68 0.95 4.22 16 27 C -0.17 -5.40 9.58 22.36 0.21 -5.19 16 28 H 0.05 2.01 6.59 -2.39 -0.02 2.00 16 29 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.09 2.36 7.61 -2.39 -0.02 2.34 16 32 H 0.09 2.57 8.00 -2.39 -0.02 2.55 16 33 H 0.03 1.40 4.97 -2.38 -0.01 1.39 16 34 H 0.03 1.26 6.68 -2.39 -0.02 1.24 16 35 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 36 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.08 1.57 7.78 -2.39 -0.02 1.55 16 38 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.09 1.27 7.80 -2.38 -0.02 1.25 16 41 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.14 3.79 7.81 -2.91 -0.02 3.77 16 43 H 0.15 4.91 8.06 -2.91 -0.02 4.89 16 44 H 0.16 4.97 8.06 -2.91 -0.02 4.95 16 45 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -76.00 368.06 -0.59 -76.59 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.98 Total: 18.02 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 5.33 Total: -14.18 kcal Atomic # 7 Polarization: -139.73 SS G_CDS: -4.36 Total: -144.10 kcal Atomic # 8 Polarization: -92.27 SS G_CDS: -4.24 Total: -96.51 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Atomic # 16 Polarization: 112.69 SS G_CDS: -0.34 Total: 112.35 kcal Total: -76.00 -0.59 -76.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336917154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.224 kcal (2) G-P(sol) polarization free energy of solvation -75.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds