Wall clock time and date at job start Sat Apr 11 2020 05:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46506 * 119.99982 * 2 1 4 4 C 1.50700 * 109.46903 * 269.99529 * 3 2 1 5 5 H 1.08003 * 120.00305 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00061 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99886 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00082 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47306 * 59.99354 * 8 6 4 10 10 H 1.48505 * 109.47043 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47015 * 299.99318 * 8 6 4 12 12 C 1.34776 * 120.00121 * 179.97438 * 2 1 3 13 13 O 1.21362 * 119.99810 * 174.33800 * 12 2 1 14 14 C 1.49340 * 119.99918 * 354.34730 * 12 2 1 15 15 O 1.21374 * 119.99775 * 359.62916 * 14 12 2 16 16 N 1.34774 * 119.99622 * 179.63541 * 14 12 2 17 17 C 1.39559 * 119.99617 * 185.22836 * 16 14 12 18 18 C 1.38795 * 120.57150 * 326.64034 * 17 16 14 19 19 N 1.31807 * 120.76659 * 180.02562 * 18 17 16 20 20 C 1.31959 * 122.08550 * 0.02562 * 19 18 17 21 21 C 1.37973 * 121.05979 * 359.97230 * 20 19 18 22 22 C 1.39699 * 119.10433 * 0.02562 * 21 20 19 23 23 C 1.48278 * 120.93903 * 179.72800 * 22 21 20 24 24 C 1.39394 * 120.12776 * 129.71947 * 23 22 21 25 25 C 1.38007 * 119.86839 * 179.74281 * 24 23 22 26 26 C 1.38330 * 120.13028 * 0.51736 * 25 24 23 27 27 C 1.38333 * 120.25178 * 359.75758 * 26 25 24 28 28 C 1.38005 * 120.12874 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47713 * 264.09040 * 1 2 3 30 30 H 1.09004 * 109.47134 * 24.09186 * 1 2 3 31 31 H 1.08999 * 109.46894 * 144.08766 * 1 2 3 32 32 H 1.08998 * 109.46864 * 29.99622 * 3 2 1 33 33 H 1.08999 * 109.47370 * 149.99723 * 3 2 1 34 34 H 0.96995 * 119.99642 * 180.02562 * 7 6 4 35 35 H 0.96996 * 120.00647 * 5.22193 * 16 14 12 36 36 H 1.07996 * 119.61431 * 0.02562 * 18 17 16 37 37 H 1.08001 * 119.46672 * 179.97438 * 20 19 18 38 38 H 1.08003 * 120.44853 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.06334 * 359.97438 * 24 23 22 40 40 H 1.08000 * 119.93095 * 180.28186 * 25 24 23 41 41 H 1.08000 * 119.87576 * 179.74282 * 26 25 24 42 42 H 1.07999 * 119.93119 * 179.97438 * 27 26 25 43 43 H 1.07996 * 120.06402 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1270 2.8774 -1.6728 7 7 3.5542 3.6176 -0.6732 8 14 3.4378 3.4168 -3.4340 9 1 2.1400 3.5951 -4.1335 10 1 4.1804 4.7029 -3.4340 11 1 4.2396 2.3817 -4.1346 12 6 2.1388 -1.1672 0.0005 13 8 3.3480 -1.1697 -0.1032 14 6 1.3976 -2.4573 0.1285 15 8 0.1889 -2.4543 0.2388 16 7 2.0709 -3.6248 0.1216 17 6 1.3725 -4.8330 0.1311 18 6 0.1630 -4.9440 0.8028 19 7 -0.4995 -6.0834 0.8147 20 6 -0.0523 -7.1608 0.1978 21 6 1.1410 -7.1409 -0.4945 22 6 1.8819 -5.9573 -0.5377 23 6 3.1725 -5.8920 -1.2648 24 6 3.4082 -4.8684 -2.1812 25 6 4.6135 -4.8097 -2.8510 26 6 5.5825 -5.7700 -2.6223 27 6 5.3518 -6.7913 -1.7182 28 6 4.1526 -6.8571 -1.0385 29 1 -0.3634 -0.1058 1.0222 30 1 -0.3633 0.9382 -0.4195 31 1 -0.3633 -0.8323 -0.6028 32 1 1.6083 2.0284 0.5138 33 1 3.1499 1.1385 0.5139 34 1 4.0310 4.4434 -0.8505 35 1 3.0408 -3.6253 0.1100 36 1 -0.2399 -4.0869 1.3217 37 1 -0.6297 -8.0727 0.2354 38 1 1.4975 -8.0284 -0.9963 39 1 2.6507 -4.1208 -2.3640 40 1 4.7989 -4.0145 -3.5579 41 1 6.5226 -5.7225 -3.1518 42 1 6.1118 -7.5386 -1.5440 43 1 3.9738 -7.6546 -0.3326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338833631.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:16 Heat of formation + Delta-G solvation = 11.745321 kcal Electronic energy + Delta-G solvation = -28645.543343 eV Core-core repulsion = 24656.451792 eV Total energy + Delta-G solvation = -3989.091551 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.33037 -39.95544 -38.95341 -38.02140 -35.90538 -34.72278 -33.39003 -32.61938 -31.14649 -30.51149 -29.67931 -28.10211 -26.33458 -24.91463 -24.44589 -23.48967 -22.56466 -21.73491 -21.46211 -19.70594 -17.95368 -17.52940 -17.37352 -16.69946 -16.38126 -16.30083 -15.86741 -15.42657 -15.11712 -14.99961 -14.83452 -14.46911 -14.21615 -14.01186 -13.60432 -13.51549 -13.39748 -13.21099 -13.08035 -12.55609 -12.43093 -12.15722 -11.95208 -11.54552 -11.37783 -11.32216 -11.14450 -11.03613 -10.78773 -10.59786 -10.25043 -10.01773 -9.75442 -9.66942 -9.16610 -8.98403 -8.87125 -8.52025 -8.39987 -7.86949 -6.13474 -4.18994 0.51486 0.86556 1.18225 1.38324 1.80706 2.53942 3.27695 3.31863 3.34519 3.47191 3.56225 3.71643 3.91502 4.14850 4.37128 4.42477 4.55971 4.66123 4.72150 4.76991 4.84155 4.92541 5.06380 5.21371 5.24718 5.32631 5.43822 5.52626 5.78077 5.82312 5.86505 5.87322 5.98724 6.08364 6.21600 6.28425 6.32305 6.41110 6.59362 6.71743 6.74490 7.02724 7.21189 7.29443 7.67324 7.81302 7.86838 8.08161 8.11562 8.53886 8.84805 9.46023 10.94790 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011528 B = 0.003451 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.271876 B = 8112.723533 C = 9976.465692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.560 5.560 3 C 0.243 3.757 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.494 3.506 13 O -0.518 6.518 14 C 0.508 3.492 15 O -0.499 6.499 16 N -0.644 5.644 17 C 0.110 3.890 18 C 0.102 3.898 19 N -0.466 5.466 20 C 0.079 3.921 21 C -0.143 4.143 22 C -0.028 4.028 23 C -0.062 4.062 24 C -0.096 4.096 25 C -0.111 4.111 26 C -0.110 4.110 27 C -0.121 4.121 28 C -0.100 4.100 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.042 0.958 33 H 0.047 0.953 34 H 0.266 0.734 35 H 0.424 0.576 36 H 0.176 0.824 37 H 0.158 0.842 38 H 0.139 0.861 39 H 0.123 0.877 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.378 -22.347 -0.133 22.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.292 5.292 3 C 0.125 3.875 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.532 5.532 8 Si 0.728 3.272 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.274 3.726 13 O -0.395 6.395 14 C 0.292 3.708 15 O -0.373 6.373 16 N -0.292 5.292 17 C 0.012 3.988 18 C -0.057 4.057 19 N -0.175 5.175 20 C -0.078 4.078 21 C -0.163 4.163 22 C -0.038 4.038 23 C -0.062 4.062 24 C -0.114 4.114 25 C -0.129 4.129 26 C -0.128 4.128 27 C -0.139 4.139 28 C -0.119 4.119 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.263 0.737 36 H 0.193 0.807 37 H 0.175 0.825 38 H 0.157 0.843 39 H 0.141 0.859 40 H 0.147 0.853 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.297 -22.066 0.380 22.188 hybrid contribution 1.459 0.446 -1.498 2.139 sum -0.838 -21.619 -1.118 21.664 Atomic orbital electron populations 1.22063 0.79394 1.03397 1.01725 1.48139 1.07653 1.06688 1.66676 1.19530 0.92607 0.77241 0.98139 1.21323 1.37078 1.06644 0.91870 0.92297 1.24923 0.95146 0.96208 0.97638 1.69915 1.38022 1.14348 1.30892 0.86518 0.78452 0.77865 0.84371 1.20139 1.21079 1.20118 1.19425 0.87551 0.84215 0.81399 1.90765 1.13233 1.86353 1.49195 1.21116 0.87748 0.85653 0.76235 1.90675 1.13910 1.86942 1.45758 1.43214 1.11700 1.02979 1.71280 1.18904 0.95533 0.85951 0.98382 1.23183 0.90837 0.96140 0.95571 1.67736 1.32950 0.99011 1.17808 1.22684 0.93806 0.96948 0.94342 1.22056 0.95876 0.97483 1.00900 1.18998 0.95132 0.93337 0.96364 1.18594 0.92761 0.96872 0.97938 1.21308 0.97602 0.97084 0.95417 1.21201 0.93233 0.98791 0.99668 1.21302 0.99234 0.94465 0.97841 1.21094 0.97078 0.98823 0.96919 1.21176 0.93184 0.97987 0.99516 0.92961 0.90948 0.90047 0.94042 0.93504 0.92483 0.73650 0.80689 0.82490 0.84318 0.85857 0.85314 0.85761 0.85719 0.85751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.36 9.26 59.84 0.55 1.91 16 2 N -0.56 -11.92 2.86 -183.51 -0.52 -12.45 16 3 C 0.24 6.16 5.09 -5.19 -0.03 6.14 16 4 C -0.53 -14.64 9.39 -34.44 -0.32 -14.96 16 5 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 8 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 12 C 0.49 10.06 7.72 -11.64 -0.09 9.97 16 13 O -0.52 -11.88 16.12 5.49 0.09 -11.80 16 14 C 0.51 8.49 7.62 -11.64 -0.09 8.40 16 15 O -0.50 -8.40 10.61 5.48 0.06 -8.34 16 16 N -0.64 -9.19 4.23 -10.02 -0.04 -9.23 16 17 C 0.11 1.45 6.29 -83.33 -0.52 0.93 16 18 C 0.10 1.41 9.89 -17.36 -0.17 1.24 16 19 N -0.47 -6.05 10.34 -13.16 -0.14 -6.18 16 20 C 0.08 0.79 11.16 -17.59 -0.20 0.60 16 21 C -0.14 -1.35 9.65 -39.13 -0.38 -1.72 16 22 C -0.03 -0.32 5.51 -104.41 -0.58 -0.89 16 23 C -0.06 -0.67 5.04 -104.91 -0.53 -1.20 16 24 C -0.10 -1.15 8.39 -39.24 -0.33 -1.48 16 25 C -0.11 -1.22 10.03 -39.63 -0.40 -1.62 16 26 C -0.11 -1.03 10.04 -39.51 -0.40 -1.43 16 27 C -0.12 -1.04 10.03 -39.63 -0.40 -1.44 16 28 C -0.10 -0.92 9.55 -39.24 -0.37 -1.30 16 29 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 30 H 0.07 1.25 8.03 -51.93 -0.42 0.84 16 31 H 0.08 1.38 5.85 -51.93 -0.30 1.08 16 32 H 0.04 1.06 8.07 -51.93 -0.42 0.64 16 33 H 0.05 1.31 7.51 -51.93 -0.39 0.92 16 34 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.42 5.93 7.17 -40.82 -0.29 5.63 16 36 H 0.18 2.53 6.08 -52.49 -0.32 2.21 16 37 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 39 H 0.12 1.62 7.72 -52.49 -0.41 1.21 16 40 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 43 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 371.46 15.07 5.60 5.60 Total: -1.00 -31.61 371.46 -8.63 -40.24 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.05 Total: 6.10 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -4.34 Total: 4.80 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.03 Total: -52.92 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: 0.15 Total: -20.13 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.61 -8.63 -40.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338833631.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.987 kcal (2) G-P(sol) polarization free energy of solvation -31.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds