Wall clock time and date at job start Sat Apr 11 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46506 * 119.99982 * 2 1 4 4 C 1.50700 * 109.46903 * 269.99529 * 3 2 1 5 5 H 1.08003 * 120.00305 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00061 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99886 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00082 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47306 * 59.99354 * 8 6 4 10 10 H 1.48505 * 109.47043 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47015 * 299.99318 * 8 6 4 12 12 C 1.34776 * 120.00121 * 179.97438 * 2 1 3 13 13 O 1.21362 * 119.99810 * 174.33800 * 12 2 1 14 14 C 1.49340 * 119.99918 * 354.34730 * 12 2 1 15 15 O 1.21374 * 119.99775 * 359.62916 * 14 12 2 16 16 N 1.34774 * 119.99622 * 179.63541 * 14 12 2 17 17 C 1.39559 * 119.99617 * 185.22836 * 16 14 12 18 18 C 1.38795 * 120.57150 * 326.64034 * 17 16 14 19 19 N 1.31807 * 120.76659 * 180.02562 * 18 17 16 20 20 C 1.31959 * 122.08550 * 0.02562 * 19 18 17 21 21 C 1.37973 * 121.05979 * 359.97230 * 20 19 18 22 22 C 1.39699 * 119.10433 * 0.02562 * 21 20 19 23 23 C 1.48278 * 120.93903 * 179.72800 * 22 21 20 24 24 C 1.39394 * 120.12776 * 129.71947 * 23 22 21 25 25 C 1.38007 * 119.86839 * 179.74281 * 24 23 22 26 26 C 1.38330 * 120.13028 * 0.51736 * 25 24 23 27 27 C 1.38333 * 120.25178 * 359.75758 * 26 25 24 28 28 C 1.38005 * 120.12874 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47713 * 264.09040 * 1 2 3 30 30 H 1.09004 * 109.47134 * 24.09186 * 1 2 3 31 31 H 1.08999 * 109.46894 * 144.08766 * 1 2 3 32 32 H 1.08998 * 109.46864 * 29.99622 * 3 2 1 33 33 H 1.08999 * 109.47370 * 149.99723 * 3 2 1 34 34 H 0.96995 * 119.99642 * 180.02562 * 7 6 4 35 35 H 0.96996 * 120.00647 * 5.22193 * 16 14 12 36 36 H 1.07996 * 119.61431 * 0.02562 * 18 17 16 37 37 H 1.08001 * 119.46672 * 179.97438 * 20 19 18 38 38 H 1.08003 * 120.44853 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.06334 * 359.97438 * 24 23 22 40 40 H 1.08000 * 119.93095 * 180.28186 * 25 24 23 41 41 H 1.08000 * 119.87576 * 179.74282 * 26 25 24 42 42 H 1.07999 * 119.93119 * 179.97438 * 27 26 25 43 43 H 1.07996 * 120.06402 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1270 2.8774 -1.6728 7 7 3.5542 3.6176 -0.6732 8 14 3.4378 3.4168 -3.4340 9 1 2.1400 3.5951 -4.1335 10 1 4.1804 4.7029 -3.4340 11 1 4.2396 2.3817 -4.1346 12 6 2.1388 -1.1672 0.0005 13 8 3.3480 -1.1697 -0.1032 14 6 1.3976 -2.4573 0.1285 15 8 0.1889 -2.4543 0.2388 16 7 2.0709 -3.6248 0.1216 17 6 1.3725 -4.8330 0.1311 18 6 0.1630 -4.9440 0.8028 19 7 -0.4995 -6.0834 0.8147 20 6 -0.0523 -7.1608 0.1978 21 6 1.1410 -7.1409 -0.4945 22 6 1.8819 -5.9573 -0.5377 23 6 3.1725 -5.8920 -1.2648 24 6 3.4082 -4.8684 -2.1812 25 6 4.6135 -4.8097 -2.8510 26 6 5.5825 -5.7700 -2.6223 27 6 5.3518 -6.7913 -1.7182 28 6 4.1526 -6.8571 -1.0385 29 1 -0.3634 -0.1058 1.0222 30 1 -0.3633 0.9382 -0.4195 31 1 -0.3633 -0.8323 -0.6028 32 1 1.6083 2.0284 0.5138 33 1 3.1499 1.1385 0.5139 34 1 4.0310 4.4434 -0.8505 35 1 3.0408 -3.6253 0.1100 36 1 -0.2399 -4.0869 1.3217 37 1 -0.6297 -8.0727 0.2354 38 1 1.4975 -8.0284 -0.9963 39 1 2.6507 -4.1208 -2.3640 40 1 4.7989 -4.0145 -3.5579 41 1 6.5226 -5.7225 -3.1518 42 1 6.1118 -7.5386 -1.5440 43 1 3.9738 -7.6546 -0.3326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338833631.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:15 Heat of formation + Delta-G solvation = -7.094856 kcal Electronic energy + Delta-G solvation = -28646.360314 eV Core-core repulsion = 24656.451792 eV Total energy + Delta-G solvation = -3989.908522 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.49372 -41.17696 -39.81975 -39.45688 -37.34456 -36.18400 -34.71854 -34.25966 -31.91086 -31.43896 -30.60299 -30.02838 -27.84135 -26.51278 -25.32124 -24.90506 -23.51330 -22.96097 -22.35486 -21.11775 -19.16809 -18.77573 -18.66950 -18.44811 -17.50482 -17.41473 -17.13026 -17.01383 -16.50409 -16.21772 -15.79784 -15.74398 -15.30465 -15.16057 -14.81954 -14.72242 -14.35935 -14.24403 -14.19594 -13.97980 -13.87425 -13.63558 -13.41959 -13.10857 -12.92556 -12.63301 -12.42174 -12.27958 -12.24110 -12.10096 -12.08041 -11.77289 -10.87697 -10.66631 -10.58248 -10.46203 -9.93155 -9.75953 -9.66527 -9.36166 -8.26318 -6.40882 -0.39433 -0.08854 0.39013 0.42124 0.62492 1.17682 1.37959 1.40605 1.48815 2.03911 2.34175 2.48540 2.67189 2.84677 3.04296 3.18212 3.31228 3.56693 3.74393 3.90362 4.01009 4.01797 4.19531 4.23805 4.38727 4.50268 4.56146 4.59977 4.65729 4.69061 4.83082 4.92020 4.95611 5.05005 5.07073 5.09048 5.11452 5.38870 5.47034 5.49149 5.55925 5.64345 5.67432 5.78583 5.96862 5.99199 6.26707 6.53040 6.64829 6.90573 6.95188 7.29296 8.81296 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011528 B = 0.003451 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.271876 B = 8112.723533 C = 9976.465692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.570 5.570 3 C 0.257 3.743 4 C -0.548 4.548 5 H 0.053 0.947 6 C 0.014 3.986 7 N -0.924 5.924 8 Si 0.966 3.034 9 H -0.264 1.264 10 H -0.276 1.276 11 H -0.275 1.275 12 C 0.490 3.510 13 O -0.551 6.551 14 C 0.520 3.480 15 O -0.501 6.501 16 N -0.630 5.630 17 C 0.086 3.914 18 C 0.089 3.911 19 N -0.488 5.488 20 C 0.086 3.914 21 C -0.130 4.130 22 C -0.025 4.025 23 C -0.072 4.072 24 C -0.116 4.116 25 C -0.130 4.130 26 C -0.112 4.112 27 C -0.117 4.117 28 C -0.096 4.096 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.036 0.964 33 H 0.013 0.987 34 H 0.269 0.731 35 H 0.425 0.575 36 H 0.160 0.840 37 H 0.195 0.805 38 H 0.176 0.824 39 H 0.100 0.900 40 H 0.125 0.875 41 H 0.145 0.855 42 H 0.156 0.844 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.265 -25.490 -1.120 25.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.300 5.300 3 C 0.137 3.863 4 C -0.586 4.586 5 H 0.071 0.929 6 C -0.186 4.186 7 N -0.563 5.563 8 Si 0.791 3.209 9 H -0.188 1.188 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.271 3.729 13 O -0.431 6.431 14 C 0.303 3.697 15 O -0.376 6.376 16 N -0.276 5.276 17 C -0.010 4.010 18 C -0.069 4.069 19 N -0.197 5.197 20 C -0.071 4.071 21 C -0.150 4.150 22 C -0.035 4.035 23 C -0.072 4.072 24 C -0.135 4.135 25 C -0.148 4.148 26 C -0.130 4.130 27 C -0.135 4.135 28 C -0.114 4.114 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.054 0.946 33 H 0.031 0.969 34 H 0.078 0.922 35 H 0.264 0.736 36 H 0.177 0.823 37 H 0.212 0.788 38 H 0.193 0.807 39 H 0.118 0.882 40 H 0.143 0.857 41 H 0.163 0.837 42 H 0.174 0.826 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.217 -25.242 -0.597 25.346 hybrid contribution 1.449 1.253 -1.176 2.248 sum -0.768 -23.989 -1.773 24.067 Atomic orbital electron populations 1.22191 0.77056 1.03754 1.03117 1.48108 1.09040 1.05892 1.67004 1.19059 0.91451 0.78952 0.96832 1.21576 1.37477 1.06979 0.92594 0.92872 1.25792 0.94665 0.96162 1.01966 1.70022 1.38499 1.14769 1.33038 0.85484 0.78787 0.77528 0.79144 1.18826 1.20141 1.20056 1.20027 0.87385 0.85324 0.80155 1.90729 1.14815 1.87148 1.50381 1.20186 0.87338 0.85034 0.77165 1.90674 1.13576 1.86834 1.46494 1.42968 1.11590 1.02796 1.70285 1.18982 0.95938 0.85853 1.00256 1.22962 0.91244 0.96450 0.96270 1.67746 1.33496 0.99487 1.19002 1.23362 0.94049 0.97117 0.92543 1.22448 0.94994 0.97717 0.99823 1.19199 0.95436 0.93299 0.95580 1.18633 0.93265 0.97331 0.97961 1.21224 0.97721 0.97516 0.96997 1.21313 0.93661 0.99688 1.00161 1.21599 0.99448 0.93987 0.97954 1.21488 0.97474 0.98814 0.95695 1.21482 0.92672 0.97761 0.99460 0.91081 0.90861 0.89258 0.94632 0.96926 0.92166 0.73615 0.82264 0.78787 0.80692 0.88178 0.85744 0.83725 0.82601 0.83181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.87 9.26 127.77 1.18 4.05 16 2 N -0.57 -25.22 2.86 -852.85 -2.44 -27.65 16 3 C 0.26 13.66 5.09 85.63 0.44 14.10 16 4 C -0.55 -31.12 9.39 25.60 0.24 -30.88 16 5 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.79 5.46 84.65 0.46 1.25 16 7 N -0.92 -54.51 13.29 21.45 0.28 -54.22 16 8 Si 0.97 44.07 29.54 68.60 2.03 46.09 16 9 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 C 0.49 20.89 7.72 87.23 0.67 21.56 16 13 O -0.55 -26.72 16.12 -3.29 -0.05 -26.77 16 14 C 0.52 18.01 7.62 87.24 0.66 18.68 16 15 O -0.50 -17.23 10.61 -3.32 -0.04 -17.26 16 16 N -0.63 -18.57 4.23 -303.97 -1.29 -19.86 16 17 C 0.09 2.27 6.29 38.57 0.24 2.51 16 18 C 0.09 2.45 9.89 84.83 0.84 3.29 16 19 N -0.49 -11.96 10.34 -195.54 -2.02 -13.98 16 20 C 0.09 1.45 11.16 84.61 0.94 2.39 16 21 C -0.13 -2.00 9.65 22.56 0.22 -1.78 16 22 C -0.02 -0.53 5.51 -19.73 -0.11 -0.64 16 23 C -0.07 -1.47 5.04 -20.05 -0.10 -1.57 16 24 C -0.12 -2.83 8.39 22.49 0.19 -2.64 16 25 C -0.13 -2.88 10.03 22.24 0.22 -2.65 16 26 C -0.11 -1.89 10.04 22.31 0.22 -1.67 16 27 C -0.12 -1.63 10.03 22.24 0.22 -1.41 16 28 C -0.10 -1.46 9.55 22.49 0.21 -1.24 16 29 H 0.07 2.25 8.13 -2.39 -0.02 2.23 16 30 H 0.07 2.57 8.03 -2.38 -0.02 2.55 16 31 H 0.09 3.05 5.85 -2.39 -0.01 3.04 16 32 H 0.04 1.90 8.07 -2.39 -0.02 1.88 16 33 H 0.01 0.75 7.51 -2.39 -0.02 0.73 16 34 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 35 H 0.42 12.41 7.17 -92.71 -0.66 11.74 16 36 H 0.16 4.76 6.08 -2.91 -0.02 4.74 16 37 H 0.20 1.74 8.06 -2.91 -0.02 1.71 16 38 H 0.18 1.43 8.06 -2.91 -0.02 1.40 16 39 H 0.10 2.82 7.72 -2.91 -0.02 2.80 16 40 H 0.12 2.70 8.06 -2.91 -0.02 2.68 16 41 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 42 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 43 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -70.79 371.46 3.64 -67.15 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.39 Total: 23.16 kcal Atomic # 6 Polarization: 16.58 SS G_CDS: 6.77 Total: 23.35 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -5.46 Total: -115.72 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -0.09 Total: -44.03 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -70.79 3.64 -67.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338833631.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.056 kcal (2) G-P(sol) polarization free energy of solvation -70.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds