Wall clock time and date at job start Sat Apr 11 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46502 * 119.99804 * 2 1 4 4 C 1.50699 * 109.47298 * 269.99717 * 3 2 1 5 5 H 1.07995 * 120.00029 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99966 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00151 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99970 * 180.02562 * 6 4 3 9 9 H 1.48508 * 109.47086 * 60.00731 * 8 6 4 10 10 H 1.48506 * 109.47255 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47269 * 300.00743 * 8 6 4 12 12 C 1.34780 * 120.00190 * 180.02562 * 2 1 3 13 13 O 1.21357 * 120.00076 * 174.35267 * 12 2 1 14 14 C 1.49343 * 119.99917 * 354.34227 * 12 2 1 15 15 O 1.21385 * 119.99890 * 359.90440 * 14 12 2 16 16 N 1.34777 * 120.00000 * 179.90358 * 14 12 2 17 17 C 1.39549 * 119.99579 * 185.08762 * 16 14 12 18 18 C 1.39064 * 119.94972 * 144.46628 * 17 16 14 19 19 C 1.37813 * 120.04535 * 179.97438 * 18 17 16 20 20 C 1.39457 * 119.95358 * 359.97438 * 19 18 17 21 21 C 1.48263 * 120.04442 * 179.97438 * 20 19 18 22 22 C 1.39395 * 119.73051 * 180.02562 * 21 20 19 23 23 C 1.38366 * 119.06494 * 180.02562 * 22 21 20 24 24 C 1.38806 * 118.52081 * 359.97438 * 23 22 21 25 25 C 1.38237 * 119.37028 * 0.25305 * 24 23 22 26 26 N 1.31770 * 120.90167 * 359.50400 * 25 24 23 27 27 C 1.39455 * 119.90527 * 0.25560 * 20 19 18 28 28 C 1.37816 * 119.95064 * 359.51199 * 27 20 19 29 29 H 1.08995 * 109.47592 * 264.04169 * 1 2 3 30 30 H 1.09001 * 109.47205 * 24.04443 * 1 2 3 31 31 H 1.09003 * 109.47161 * 144.04135 * 1 2 3 32 32 H 1.08993 * 109.47039 * 30.00619 * 3 2 1 33 33 H 1.09003 * 109.46900 * 150.00236 * 3 2 1 34 34 H 0.97003 * 120.00355 * 179.97438 * 7 6 4 35 35 H 0.96999 * 120.00184 * 5.08445 * 16 14 12 36 36 H 1.08003 * 119.97710 * 359.97323 * 18 17 16 37 37 H 1.08003 * 120.02181 * 180.02562 * 19 18 17 38 38 H 1.07999 * 120.46222 * 359.97438 * 22 21 20 39 39 H 1.08005 * 120.73875 * 180.02562 * 23 22 21 40 40 H 1.07996 * 120.31731 * 179.97438 * 24 23 22 41 41 H 1.08004 * 119.54527 * 179.72621 * 25 24 23 42 42 H 1.08001 * 120.02058 * 179.74291 * 27 20 19 43 43 H 1.08002 * 119.96979 * 180.23500 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0975 1.0963 -2.2417 6 6 3.1259 2.8780 -1.6727 7 7 3.5531 3.6182 -0.6731 8 14 3.4367 3.4177 -3.4338 9 1 2.1389 3.5950 -4.1336 10 1 4.1793 4.7037 -3.4338 11 1 4.2393 2.3831 -4.1342 12 6 2.1389 -1.1672 -0.0005 13 8 3.3480 -1.1697 -0.1039 14 6 1.3976 -2.4575 0.1264 15 8 0.1884 -2.4549 0.2318 16 7 2.0714 -3.6248 0.1239 17 6 1.3735 -4.8331 0.1354 18 6 1.8682 -5.9273 -0.5658 19 6 1.1809 -7.1218 -0.5554 20 6 -0.0113 -7.2328 0.1595 21 6 -0.7528 -8.5167 0.1716 22 6 -1.9441 -8.6203 0.8880 23 6 -2.6244 -9.8251 0.8903 24 6 -2.0914 -10.8886 0.1751 25 6 -0.9028 -10.7174 -0.5096 26 7 -0.2770 -9.5578 -0.4994 27 6 -0.5082 -6.1329 0.8581 28 6 0.1848 -4.9417 0.8489 29 1 -0.3634 -0.1067 1.0220 30 1 -0.3634 0.9385 -0.4187 31 1 -0.3633 -0.8319 -0.6035 32 1 1.6084 2.0283 0.5139 33 1 3.1498 1.1384 0.5138 34 1 4.0300 4.4441 -0.8502 35 1 3.0413 -3.6249 0.1141 36 1 2.7918 -5.8410 -1.1191 37 1 1.5657 -7.9715 -1.0998 38 1 -2.3301 -7.7723 1.4341 39 1 -3.5501 -9.9354 1.4358 40 1 -2.5981 -11.8422 0.1573 41 1 -0.4832 -11.5443 -1.0634 42 1 -1.4334 -6.2156 1.4090 43 1 -0.1977 -4.0908 1.3930 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354315107.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:45 Heat of formation + Delta-G solvation = 13.001915 kcal Electronic energy + Delta-G solvation = -27285.110463 eV Core-core repulsion = 23296.073402 eV Total energy + Delta-G solvation = -3989.037061 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.99425 -40.46326 -39.02576 -37.76484 -35.71276 -34.55881 -32.93509 -32.61631 -32.23222 -31.08189 -29.02885 -28.04885 -26.28805 -24.96575 -24.30832 -23.75169 -22.56398 -22.14768 -21.08870 -19.54917 -18.06422 -17.57526 -17.16998 -16.67575 -16.54831 -16.27420 -15.86736 -15.57700 -15.12961 -14.88216 -14.52726 -14.45447 -14.40688 -14.20103 -13.73879 -13.62316 -13.27917 -13.12864 -12.84667 -12.57811 -12.39660 -12.13861 -12.06560 -11.87431 -11.44638 -11.29376 -11.00369 -10.86906 -10.67508 -10.55058 -10.23158 -10.22663 -9.79695 -9.73317 -9.51268 -9.15319 -8.83730 -8.49943 -8.05124 -7.83389 -6.11440 -4.16852 0.23763 0.90471 1.25882 1.36705 1.90751 2.64373 3.29830 3.32286 3.33842 3.37395 3.65166 3.82876 3.85926 3.98297 4.30146 4.39633 4.48073 4.64302 4.70079 4.73473 4.78957 4.88499 5.11790 5.18611 5.23316 5.31091 5.33561 5.44912 5.68778 5.78425 5.86100 5.91351 6.04510 6.08359 6.15263 6.22430 6.33511 6.39683 6.47305 6.74677 6.83662 7.13279 7.23635 7.32683 7.63091 7.78164 7.86522 8.10540 8.15159 8.57627 8.87171 9.48137 10.96705 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028375 B = 0.001910 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.558086 B =14659.039662 C =14954.106329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.562 5.562 3 C 0.243 3.757 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.494 3.506 13 O -0.521 6.521 14 C 0.509 3.491 15 O -0.500 6.500 16 N -0.653 5.653 17 C 0.165 3.835 18 C -0.149 4.149 19 C -0.057 4.057 20 C -0.077 4.077 21 C 0.179 3.821 22 C -0.167 4.167 23 C -0.071 4.071 24 C -0.183 4.183 25 C 0.105 3.895 26 N -0.482 5.482 27 C -0.079 4.079 28 C -0.125 4.125 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.047 0.953 34 H 0.265 0.735 35 H 0.424 0.576 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.157 0.843 42 H 0.129 0.871 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.252 -26.657 4.481 29.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.293 5.293 3 C 0.124 3.876 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.274 3.726 13 O -0.398 6.398 14 C 0.293 3.707 15 O -0.374 6.374 16 N -0.299 5.299 17 C 0.069 3.931 18 C -0.169 4.169 19 C -0.077 4.077 20 C -0.079 4.079 21 C 0.044 3.956 22 C -0.187 4.187 23 C -0.097 4.097 24 C -0.203 4.203 25 C -0.053 4.053 26 N -0.191 5.191 27 C -0.098 4.098 28 C -0.145 4.145 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.262 0.738 36 H 0.150 0.850 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.174 0.826 42 H 0.147 0.853 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.594 -26.255 4.069 28.603 hybrid contribution -0.244 0.234 -0.538 0.636 sum -10.838 -26.022 3.531 28.409 Atomic orbital electron populations 1.22049 0.79460 1.03374 1.01609 1.48134 1.07624 1.06745 1.66795 1.19525 0.92612 0.77303 0.98129 1.21330 1.37079 1.06583 0.91904 0.92282 1.24928 0.95160 0.96218 0.97670 1.69914 1.38049 1.14346 1.30881 0.86508 0.78441 0.77838 0.84358 1.20156 1.21104 1.20101 1.19504 0.87560 0.84348 0.81216 1.90753 1.13342 1.86449 1.49261 1.21023 0.87745 0.85681 0.76235 1.90676 1.13908 1.87069 1.45789 1.43285 1.11650 1.03450 1.71529 1.17956 0.93906 0.85358 0.95833 1.20977 1.02328 0.92764 1.00864 1.21051 0.93106 0.97004 0.96494 1.18451 0.96191 0.91320 1.01923 1.19799 0.91535 0.92036 0.92253 1.22139 0.96211 0.99073 1.01259 1.21547 0.99210 0.92487 0.96474 1.22175 0.98105 1.00234 0.99789 1.22732 0.91985 0.94564 0.95985 1.67647 1.33540 0.99602 1.18286 1.21068 0.99324 0.91456 0.97965 1.21232 0.95252 0.98446 0.99606 0.93102 0.91026 0.90003 0.94076 0.93512 0.92510 0.73755 0.84950 0.84371 0.84399 0.84689 0.84811 0.82606 0.85280 0.83683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.38 9.27 59.84 0.55 1.94 16 2 N -0.56 -12.10 2.86 -183.52 -0.52 -12.63 16 3 C 0.24 6.22 5.09 -5.19 -0.03 6.19 16 4 C -0.53 -14.81 9.39 -34.44 -0.32 -15.13 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.49 10.18 7.72 -11.63 -0.09 10.09 16 13 O -0.52 -12.10 16.12 5.49 0.09 -12.01 16 14 C 0.51 8.56 7.60 -11.64 -0.09 8.47 16 15 O -0.50 -8.47 10.70 5.47 0.06 -8.41 16 16 N -0.65 -9.08 5.31 -10.28 -0.05 -9.13 16 17 C 0.16 2.10 6.29 -83.74 -0.53 1.57 16 18 C -0.15 -1.65 9.95 -39.43 -0.39 -2.05 16 19 C -0.06 -0.63 9.56 -39.28 -0.38 -1.00 16 20 C -0.08 -0.85 5.88 -104.87 -0.62 -1.47 16 21 C 0.18 1.86 6.73 -82.95 -0.56 1.31 16 22 C -0.17 -1.36 9.46 -39.10 -0.37 -1.73 16 23 C -0.07 -0.47 10.16 -39.32 -0.40 -0.87 16 24 C -0.18 -1.15 10.11 -39.37 -0.40 -1.55 16 25 C 0.11 0.82 11.17 -17.58 -0.20 0.62 16 26 N -0.48 -5.05 9.43 -9.78 -0.09 -5.14 16 27 C -0.08 -0.83 9.41 -39.28 -0.37 -1.20 16 28 C -0.13 -1.55 8.68 -39.43 -0.34 -1.89 16 29 H 0.05 0.81 8.13 -51.93 -0.42 0.38 16 30 H 0.07 1.25 8.03 -51.93 -0.42 0.83 16 31 H 0.08 1.40 5.84 -51.93 -0.30 1.10 16 32 H 0.04 1.06 8.07 -51.93 -0.42 0.64 16 33 H 0.05 1.31 7.51 -51.93 -0.39 0.93 16 34 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.42 5.35 8.30 -40.82 -0.34 5.01 16 36 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 37 H 0.14 1.40 7.53 -52.48 -0.40 1.00 16 38 H 0.14 0.87 6.18 -52.49 -0.32 0.54 16 39 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 40 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 41 H 0.16 0.78 8.06 -52.48 -0.42 0.36 16 42 H 0.13 1.03 6.17 -52.49 -0.32 0.70 16 43 H 0.15 1.90 6.23 -52.49 -0.33 1.57 16 LS Contribution 370.82 15.07 5.59 5.59 Total: -1.00 -33.03 370.82 -8.73 -41.76 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -4.90 Total: 3.64 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: -4.62 Total: 4.98 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 0.07 Total: -52.12 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: 0.15 Total: -20.42 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.03 -8.73 -41.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354315107.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.764 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds