Wall clock time and date at job start Sat Apr 11 2020 05:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46502 * 119.99804 * 2 1 4 4 C 1.50699 * 109.47298 * 269.99717 * 3 2 1 5 5 H 1.07995 * 120.00029 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99966 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00151 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99970 * 180.02562 * 6 4 3 9 9 H 1.48508 * 109.47086 * 60.00731 * 8 6 4 10 10 H 1.48506 * 109.47255 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47269 * 300.00743 * 8 6 4 12 12 C 1.34780 * 120.00190 * 180.02562 * 2 1 3 13 13 O 1.21357 * 120.00076 * 174.35267 * 12 2 1 14 14 C 1.49343 * 119.99917 * 354.34227 * 12 2 1 15 15 O 1.21385 * 119.99890 * 359.90440 * 14 12 2 16 16 N 1.34777 * 120.00000 * 179.90358 * 14 12 2 17 17 C 1.39549 * 119.99579 * 185.08762 * 16 14 12 18 18 C 1.39064 * 119.94972 * 144.46628 * 17 16 14 19 19 C 1.37813 * 120.04535 * 179.97438 * 18 17 16 20 20 C 1.39457 * 119.95358 * 359.97438 * 19 18 17 21 21 C 1.48263 * 120.04442 * 179.97438 * 20 19 18 22 22 C 1.39395 * 119.73051 * 180.02562 * 21 20 19 23 23 C 1.38366 * 119.06494 * 180.02562 * 22 21 20 24 24 C 1.38806 * 118.52081 * 359.97438 * 23 22 21 25 25 C 1.38237 * 119.37028 * 0.25305 * 24 23 22 26 26 N 1.31770 * 120.90167 * 359.50400 * 25 24 23 27 27 C 1.39455 * 119.90527 * 0.25560 * 20 19 18 28 28 C 1.37816 * 119.95064 * 359.51199 * 27 20 19 29 29 H 1.08995 * 109.47592 * 264.04169 * 1 2 3 30 30 H 1.09001 * 109.47205 * 24.04443 * 1 2 3 31 31 H 1.09003 * 109.47161 * 144.04135 * 1 2 3 32 32 H 1.08993 * 109.47039 * 30.00619 * 3 2 1 33 33 H 1.09003 * 109.46900 * 150.00236 * 3 2 1 34 34 H 0.97003 * 120.00355 * 179.97438 * 7 6 4 35 35 H 0.96999 * 120.00184 * 5.08445 * 16 14 12 36 36 H 1.08003 * 119.97710 * 359.97323 * 18 17 16 37 37 H 1.08003 * 120.02181 * 180.02562 * 19 18 17 38 38 H 1.07999 * 120.46222 * 359.97438 * 22 21 20 39 39 H 1.08005 * 120.73875 * 180.02562 * 23 22 21 40 40 H 1.07996 * 120.31731 * 179.97438 * 24 23 22 41 41 H 1.08004 * 119.54527 * 179.72621 * 25 24 23 42 42 H 1.08001 * 120.02058 * 179.74291 * 27 20 19 43 43 H 1.08002 * 119.96979 * 180.23500 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0975 1.0963 -2.2417 6 6 3.1259 2.8780 -1.6727 7 7 3.5531 3.6182 -0.6731 8 14 3.4367 3.4177 -3.4338 9 1 2.1389 3.5950 -4.1336 10 1 4.1793 4.7037 -3.4338 11 1 4.2393 2.3831 -4.1342 12 6 2.1389 -1.1672 -0.0005 13 8 3.3480 -1.1697 -0.1039 14 6 1.3976 -2.4575 0.1264 15 8 0.1884 -2.4549 0.2318 16 7 2.0714 -3.6248 0.1239 17 6 1.3735 -4.8331 0.1354 18 6 1.8682 -5.9273 -0.5658 19 6 1.1809 -7.1218 -0.5554 20 6 -0.0113 -7.2328 0.1595 21 6 -0.7528 -8.5167 0.1716 22 6 -1.9441 -8.6203 0.8880 23 6 -2.6244 -9.8251 0.8903 24 6 -2.0914 -10.8886 0.1751 25 6 -0.9028 -10.7174 -0.5096 26 7 -0.2770 -9.5578 -0.4994 27 6 -0.5082 -6.1329 0.8581 28 6 0.1848 -4.9417 0.8489 29 1 -0.3634 -0.1067 1.0220 30 1 -0.3634 0.9385 -0.4187 31 1 -0.3633 -0.8319 -0.6035 32 1 1.6084 2.0283 0.5139 33 1 3.1498 1.1384 0.5138 34 1 4.0300 4.4441 -0.8502 35 1 3.0413 -3.6249 0.1141 36 1 2.7918 -5.8410 -1.1191 37 1 1.5657 -7.9715 -1.0998 38 1 -2.3301 -7.7723 1.4341 39 1 -3.5501 -9.9354 1.4358 40 1 -2.5981 -11.8422 0.1573 41 1 -0.4832 -11.5443 -1.0634 42 1 -1.4334 -6.2156 1.4090 43 1 -0.1977 -4.0908 1.3930 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354315107.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:44 Heat of formation + Delta-G solvation = -7.330191 kcal Electronic energy + Delta-G solvation = -27285.992129 eV Core-core repulsion = 23296.073402 eV Total energy + Delta-G solvation = -3989.918727 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.21408 -41.21818 -40.23379 -39.05152 -37.19540 -35.93632 -34.67087 -33.51861 -33.00239 -31.92715 -30.21125 -29.68824 -27.76777 -26.45596 -25.08952 -24.91564 -23.63074 -23.17029 -22.09537 -20.93529 -19.14473 -18.75153 -18.58915 -18.32411 -17.41375 -17.34044 -17.02062 -16.86014 -16.68003 -16.16789 -15.69068 -15.53238 -15.13724 -15.08983 -14.97957 -14.76823 -14.43091 -14.23058 -13.92670 -13.86243 -13.75818 -13.59843 -13.40336 -13.07464 -12.92610 -12.62678 -12.56288 -12.30657 -12.25931 -12.19971 -11.77942 -11.60173 -10.82024 -10.65498 -10.42035 -10.39760 -10.27103 -9.96353 -9.64203 -8.89763 -8.25086 -6.39558 -0.52598 0.24330 0.37608 0.40851 0.83206 1.28461 1.38984 1.41916 1.49999 2.09913 2.36509 2.56579 2.62653 3.05466 3.12374 3.19116 3.25956 3.68820 3.95041 3.99656 4.06311 4.16371 4.24053 4.35739 4.39383 4.46237 4.54738 4.58312 4.68816 4.81029 4.85730 4.96853 5.06242 5.08170 5.12981 5.19165 5.24046 5.29266 5.36953 5.43316 5.54522 5.68385 5.80847 5.87861 5.96282 5.98673 6.35954 6.62971 6.68574 6.95950 7.03412 7.30602 8.82216 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028375 B = 0.001910 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.558086 B =14659.039662 C =14954.106329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.571 5.571 3 C 0.256 3.744 4 C -0.548 4.548 5 H 0.053 0.947 6 C 0.013 3.987 7 N -0.923 5.923 8 Si 0.967 3.033 9 H -0.263 1.263 10 H -0.277 1.277 11 H -0.276 1.276 12 C 0.488 3.512 13 O -0.555 6.555 14 C 0.521 3.479 15 O -0.502 6.502 16 N -0.638 5.638 17 C 0.138 3.862 18 C -0.142 4.142 19 C -0.066 4.066 20 C -0.074 4.074 21 C 0.147 3.853 22 C -0.172 4.172 23 C -0.075 4.075 24 C -0.173 4.173 25 C 0.088 3.912 26 N -0.509 5.509 27 C -0.078 4.078 28 C -0.132 4.132 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.036 0.964 33 H 0.013 0.987 34 H 0.269 0.731 35 H 0.429 0.571 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.153 0.847 39 H 0.165 0.835 40 H 0.165 0.835 41 H 0.178 0.822 42 H 0.155 0.845 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.194 -29.016 3.941 32.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.302 5.302 3 C 0.136 3.864 4 C -0.586 4.586 5 H 0.071 0.929 6 C -0.187 4.187 7 N -0.562 5.562 8 Si 0.792 3.208 9 H -0.188 1.188 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.270 3.730 13 O -0.435 6.435 14 C 0.303 3.697 15 O -0.377 6.377 16 N -0.284 5.284 17 C 0.044 3.956 18 C -0.162 4.162 19 C -0.086 4.086 20 C -0.075 4.075 21 C 0.012 3.988 22 C -0.191 4.191 23 C -0.100 4.100 24 C -0.193 4.193 25 C -0.069 4.069 26 N -0.219 5.219 27 C -0.097 4.097 28 C -0.152 4.152 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.054 0.946 33 H 0.031 0.969 34 H 0.078 0.922 35 H 0.268 0.732 36 H 0.165 0.835 37 H 0.161 0.839 38 H 0.171 0.829 39 H 0.183 0.817 40 H 0.183 0.817 41 H 0.195 0.805 42 H 0.172 0.828 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.564 -28.658 3.538 31.491 hybrid contribution 0.284 0.727 -0.320 0.843 sum -12.281 -27.931 3.218 30.681 Atomic orbital electron populations 1.22185 0.77038 1.03721 1.03086 1.48114 1.09071 1.05935 1.67112 1.19057 0.91498 0.79093 0.96774 1.21585 1.37475 1.06908 0.92664 0.92884 1.25802 0.94719 0.96212 1.01986 1.70020 1.38491 1.14749 1.32987 0.85472 0.78766 0.77466 0.79144 1.18795 1.20170 1.20184 1.20158 0.87400 0.85511 0.79948 1.90720 1.14972 1.87259 1.50500 1.20086 0.87351 0.85015 0.77237 1.90671 1.13543 1.86932 1.46538 1.43083 1.11862 1.03052 1.70433 1.18092 0.94687 0.85034 0.97781 1.21111 1.02682 0.92183 1.00221 1.21182 0.93438 0.97045 0.96905 1.18722 0.95963 0.92005 1.00848 1.19855 0.92855 0.91904 0.94201 1.22387 0.95523 1.00446 1.00770 1.21974 1.00013 0.91781 0.96246 1.22577 0.97229 1.01452 0.98021 1.23217 0.92776 0.94355 0.96588 1.67577 1.34728 1.00537 1.19030 1.21266 0.99995 0.90537 0.97898 1.21258 0.95321 0.98937 0.99707 0.91096 0.91026 0.89140 0.94615 0.96932 0.92201 0.73201 0.83450 0.83861 0.82910 0.81714 0.81707 0.80529 0.82793 0.84532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.85 9.27 127.77 1.18 4.04 16 2 N -0.57 -25.17 2.86 -852.88 -2.44 -27.60 16 3 C 0.26 13.60 5.09 85.63 0.44 14.03 16 4 C -0.55 -31.23 9.39 25.60 0.24 -30.99 16 5 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.71 5.46 84.65 0.46 1.18 16 7 N -0.92 -54.53 13.29 21.45 0.28 -54.24 16 8 Si 0.97 44.36 29.54 68.60 2.03 46.38 16 9 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 C 0.49 20.63 7.72 87.24 0.67 21.30 16 13 O -0.55 -26.77 16.12 -3.27 -0.05 -26.82 16 14 C 0.52 17.55 7.60 87.24 0.66 18.22 16 15 O -0.50 -16.71 10.70 -3.35 -0.04 -16.75 16 16 N -0.64 -17.75 5.31 -304.78 -1.62 -19.37 16 17 C 0.14 3.46 6.29 38.31 0.24 3.70 16 18 C -0.14 -3.07 9.95 22.37 0.22 -2.84 16 19 C -0.07 -1.41 9.56 22.46 0.21 -1.20 16 20 C -0.07 -1.55 5.88 -20.02 -0.12 -1.67 16 21 C 0.15 2.86 6.73 41.96 0.28 3.14 16 22 C -0.17 -2.41 9.46 22.58 0.21 -2.20 16 23 C -0.07 -0.73 10.16 22.44 0.23 -0.50 16 24 C -0.17 -1.61 10.11 22.41 0.23 -1.39 16 25 C 0.09 1.19 11.17 84.70 0.95 2.14 16 26 N -0.51 -10.08 9.43 -184.86 -1.74 -11.82 16 27 C -0.08 -1.54 9.41 22.46 0.21 -1.33 16 28 C -0.13 -3.18 8.68 22.37 0.19 -2.99 16 29 H 0.07 2.19 8.13 -2.39 -0.02 2.17 16 30 H 0.07 2.48 8.03 -2.39 -0.02 2.46 16 31 H 0.09 3.04 5.84 -2.39 -0.01 3.02 16 32 H 0.04 1.91 8.07 -2.39 -0.02 1.89 16 33 H 0.01 0.75 7.51 -2.39 -0.02 0.73 16 34 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 35 H 0.43 10.96 8.30 -92.71 -0.77 10.19 16 36 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 37 H 0.14 2.85 7.53 -2.91 -0.02 2.83 16 38 H 0.15 1.52 6.18 -2.91 -0.02 1.50 16 39 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 40 H 0.17 0.45 8.06 -2.91 -0.02 0.43 16 41 H 0.18 1.39 8.06 -2.91 -0.02 1.36 16 42 H 0.15 2.14 6.17 -2.91 -0.02 2.12 16 43 H 0.14 3.51 6.23 -2.91 -0.02 3.49 16 Total: -1.00 -72.54 370.82 3.25 -69.29 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.30 Total: 18.29 kcal Atomic # 6 Polarization: 16.12 SS G_CDS: 6.52 Total: 22.64 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -5.51 Total: -113.03 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -0.09 Total: -43.57 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -72.54 3.25 -69.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354315107.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.960 kcal (2) G-P(sol) polarization free energy of solvation -72.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds