Wall clock time and date at job start Sat Apr 11 2020 05:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45202 * 109.47548 * 2 1 4 4 C 1.34218 * 117.00461 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00190 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00496 * 179.97438 * 4 3 2 7 7 S 1.81398 * 109.47356 * 180.02562 * 6 4 3 8 8 C 1.76197 * 102.99805 * 180.02562 * 7 6 4 9 9 C 1.39237 * 120.04812 * 180.02562 * 8 7 6 10 10 N 1.32010 * 120.07397 * 179.97438 * 9 8 7 11 11 C 1.32094 * 120.18058 * 359.97438 * 10 9 8 12 12 C 1.39136 * 120.09376 * 0.02562 * 11 10 9 13 13 N 1.38993 * 120.03477 * 180.02562 * 12 11 10 14 14 C 1.46501 * 120.00069 * 359.97438 * 13 12 11 15 15 C 1.53004 * 109.46739 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.47235 * 299.99477 * 15 14 13 17 17 C 1.52993 * 109.47506 * 59.99875 * 15 14 13 18 18 C 1.50703 * 109.46895 * 180.02562 * 15 14 13 19 19 H 1.08005 * 119.99848 * 359.97438 * 18 15 14 20 20 C 1.37873 * 120.00059 * 179.97438 * 18 15 14 21 21 N 1.31520 * 120.00078 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 120.00040 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.47353 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47552 * 120.00045 * 22 20 18 25 25 H 1.48503 * 109.46949 * 239.99745 * 22 20 18 26 26 N 1.32751 * 119.92254 * 359.97438 * 12 11 10 27 27 H 1.09000 * 109.46859 * 59.99660 * 1 2 3 28 28 H 1.08999 * 109.47398 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46879 * 300.00187 * 1 2 3 30 30 H 1.08996 * 109.47299 * 240.00146 * 2 1 3 31 31 H 1.09007 * 109.47136 * 119.99733 * 2 1 3 32 32 H 1.09005 * 109.46414 * 60.00035 * 6 4 3 33 33 H 1.09002 * 109.46888 * 300.00732 * 6 4 3 34 34 H 1.07998 * 119.96646 * 359.97184 * 9 8 7 35 35 H 1.07999 * 119.95301 * 179.97438 * 11 10 9 36 36 H 0.96999 * 120.00078 * 179.97438 * 13 12 11 37 37 H 1.08998 * 109.46835 * 299.99602 * 14 13 12 38 38 H 1.08997 * 109.47320 * 60.00442 * 14 13 12 39 39 H 1.09002 * 109.46728 * 60.00163 * 16 15 14 40 40 H 1.08997 * 109.47348 * 180.02562 * 16 15 14 41 41 H 1.09000 * 109.47384 * 300.00758 * 16 15 14 42 42 H 1.09003 * 109.47098 * 59.99993 * 17 15 14 43 43 H 1.08997 * 109.47158 * 179.97438 * 17 15 14 44 44 H 1.08997 * 109.47164 * 299.99716 * 17 15 14 45 45 H 0.96999 * 119.99661 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 16 5.7323 2.8424 0.0001 8 6 6.2180 4.5361 0.0002 9 6 7.5687 4.8740 -0.0002 10 7 7.9332 6.1428 -0.0006 11 6 7.0190 7.0963 -0.0012 12 6 5.6672 6.7668 -0.0008 13 7 4.7063 7.7711 -0.0019 14 6 5.1167 9.1775 -0.0030 15 6 3.8746 10.0711 -0.0035 16 6 3.0393 9.7826 -1.2525 17 6 3.0395 9.7844 1.2460 18 6 4.2967 11.5178 -0.0052 19 1 5.3459 11.7742 -0.0055 20 6 3.3435 12.5140 -0.0064 21 7 2.0659 12.2017 -0.0066 22 14 3.8667 14.3072 -0.0093 23 1 5.3493 14.3903 -0.0092 24 1 3.3330 14.9767 -1.2226 25 1 3.3335 14.9803 1.2023 26 7 5.2963 5.4922 -0.0003 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 3.5844 3.4700 0.8896 33 1 3.5852 3.4690 -0.8904 34 1 8.3191 4.0974 -0.0001 35 1 7.3213 8.1332 -0.0011 36 1 3.7641 7.5409 -0.0020 37 1 5.7113 9.3831 0.8870 38 1 5.7119 9.3817 -0.8930 39 1 2.7341 8.7362 -1.2517 40 1 2.1548 10.4195 -1.2531 41 1 3.6343 9.9868 -2.1427 42 1 3.6346 9.9899 2.1358 43 1 2.1550 10.4213 1.2458 44 1 2.7343 8.7380 1.2467 45 1 1.3954 12.9026 -0.0079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413411653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:55 Heat of formation + Delta-G solvation = -41.524616 kcal Electronic energy + Delta-G solvation = -26222.204904 eV Core-core repulsion = 22366.247347 eV Total energy + Delta-G solvation = -3855.957557 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.81039 -40.70380 -37.33213 -37.06144 -34.64483 -33.68010 -32.37210 -31.42660 -30.42657 -29.33721 -26.00119 -25.83419 -25.14502 -24.39056 -23.84558 -22.90577 -21.60519 -19.07534 -18.44894 -17.99093 -17.46560 -17.17346 -16.76638 -16.39078 -16.04797 -15.62319 -15.23559 -14.87913 -14.83299 -14.20607 -14.07546 -13.72974 -13.65315 -13.33506 -13.14448 -12.96769 -12.80032 -12.29088 -12.23613 -12.01979 -11.77052 -11.44770 -11.31599 -11.30711 -11.06452 -10.96980 -10.94995 -10.85720 -10.73354 -10.65801 -10.28487 -10.28150 -9.69386 -9.52251 -9.05746 -8.89700 -8.49893 -8.15376 -7.38161 -6.12476 -4.23830 0.87522 0.93268 1.45380 1.76687 1.80452 2.38706 3.20412 3.29473 3.31443 3.42055 3.86485 4.21206 4.30959 4.51199 4.55843 4.57824 4.65968 4.67160 4.85021 4.96942 5.05009 5.14739 5.24556 5.31470 5.36785 5.49237 5.57234 5.88933 6.00392 6.02924 6.30108 6.33149 6.57510 6.73133 6.81451 6.88082 6.89230 7.21146 7.28062 7.43676 7.57685 7.65327 7.73368 7.88999 7.98594 8.12679 8.26984 8.76555 9.42972 10.88932 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013111 B = 0.002384 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.023250 B =11739.726127 C =13667.781742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.350 6.350 4 C 0.483 3.517 5 O -0.494 6.494 6 C -0.117 4.117 7 S 0.014 5.986 8 C 0.108 3.892 9 C -0.012 4.012 10 N -0.386 5.386 11 C -0.019 4.019 12 C 0.382 3.618 13 N -0.692 5.692 14 C 0.130 3.870 15 C 0.060 3.940 16 C -0.132 4.132 17 C -0.132 4.132 18 C -0.509 4.509 19 H 0.059 0.941 20 C 0.067 3.933 21 N -0.884 5.884 22 Si 0.894 3.106 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 N -0.525 5.525 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.164 0.836 35 H 0.169 0.831 36 H 0.407 0.593 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.007 0.993 40 H 0.087 0.913 41 H 0.027 0.973 42 H 0.027 0.973 43 H 0.086 0.914 44 H 0.007 0.993 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.097 -20.136 0.013 20.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.267 6.267 4 C 0.324 3.676 5 O -0.381 6.381 6 C -0.266 4.266 7 S 0.251 5.749 8 C -0.145 4.145 9 C -0.179 4.179 10 N -0.099 5.099 11 C -0.191 4.191 12 C 0.137 3.863 13 N -0.321 5.321 14 C 0.007 3.993 15 C 0.059 3.941 16 C -0.190 4.190 17 C -0.190 4.190 18 C -0.548 4.548 19 H 0.077 0.923 20 C -0.135 4.135 21 N -0.522 5.522 22 Si 0.722 3.278 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 N -0.254 5.254 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.181 0.819 35 H 0.186 0.814 36 H 0.244 0.756 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.026 0.974 40 H 0.105 0.895 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.105 0.895 44 H 0.026 0.974 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.764 -21.170 0.013 21.184 hybrid contribution -1.040 2.013 0.000 2.266 sum -0.277 -19.157 0.013 19.159 Atomic orbital electron populations 1.21826 0.92271 1.03143 1.03859 1.23121 0.95599 0.79534 1.02880 1.86501 1.23421 1.32974 1.83830 1.22597 0.81201 0.90983 0.72774 1.90718 1.60125 1.42472 1.44771 1.23149 0.97543 0.95258 1.10662 1.85989 0.99872 0.97553 1.91452 1.24013 0.93745 0.98336 0.98383 1.22729 0.93059 0.94219 1.07928 1.68195 1.36302 1.00057 1.05324 1.23086 0.88104 1.00284 1.07624 1.19457 0.89913 0.87322 0.89645 1.45201 1.07317 1.04275 1.75317 1.21997 1.00424 0.76736 1.00171 1.18327 0.89439 0.93295 0.93052 1.21843 1.02592 0.97139 0.97422 1.21839 1.02582 0.97148 0.97422 1.20967 0.93054 0.89345 1.51394 0.92262 1.24886 0.94897 0.99070 0.94629 1.69813 0.99700 1.32502 1.50154 0.86501 0.78856 0.84826 0.77615 1.19713 1.21016 1.21021 1.68288 1.35443 0.99356 1.22344 0.91259 0.90022 0.91265 0.90932 0.90932 0.84755 0.84756 0.81873 0.81437 0.75600 0.92380 0.92372 0.97415 0.89473 0.95360 0.95358 0.89487 0.97405 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.29 37.16 0.38 -0.44 16 2 C 0.06 0.47 6.19 37.16 0.23 0.70 16 3 O -0.35 -3.48 10.22 -39.22 -0.40 -3.88 16 4 C 0.48 5.30 7.98 36.01 0.29 5.59 16 5 O -0.49 -6.46 15.61 -18.75 -0.29 -6.75 16 6 C -0.12 -1.22 5.82 36.01 0.21 -1.01 16 7 S 0.01 0.16 21.06 -107.50 -2.26 -2.10 16 8 C 0.11 1.50 7.00 -16.76 -0.12 1.38 16 9 C -0.01 -0.17 10.97 -17.10 -0.19 -0.35 16 10 N -0.39 -5.93 10.48 -12.68 -0.13 -6.06 16 11 C -0.02 -0.29 10.48 -17.11 -0.18 -0.47 16 12 C 0.38 6.12 7.66 -154.73 -1.19 4.94 16 13 N -0.69 -11.43 5.13 -60.34 -0.31 -11.74 16 14 C 0.13 2.35 3.73 -4.04 -0.02 2.33 16 15 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 16 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 17 C -0.13 -2.85 8.08 37.15 0.30 -2.54 16 18 C -0.51 -12.40 8.01 -34.44 -0.28 -12.68 16 19 H 0.06 1.43 7.74 -52.48 -0.41 1.03 16 20 C 0.07 1.68 5.15 -17.82 -0.09 1.59 16 21 N -0.88 -22.72 9.35 55.43 0.52 -22.20 16 22 Si 0.89 19.83 29.54 -169.99 -5.02 14.81 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 N -0.53 -7.99 9.63 -11.10 -0.11 -8.10 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 31 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 32 H 0.13 1.33 8.14 -51.92 -0.42 0.91 16 33 H 0.13 1.33 8.14 -51.92 -0.42 0.91 16 34 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.17 2.42 6.71 -52.49 -0.35 2.07 16 36 H 0.41 6.78 6.29 -40.82 -0.26 6.52 16 37 H 0.06 1.04 7.94 -51.93 -0.41 0.63 16 38 H 0.06 1.04 7.94 -51.93 -0.41 0.63 16 39 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 40 H 0.09 2.10 6.07 -51.93 -0.31 1.79 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.09 2.10 6.07 -51.93 -0.32 1.78 16 44 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 45 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 LS Contribution 384.38 15.07 5.79 5.79 Total: -1.00 -27.19 384.38 -9.18 -36.37 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.54 Total: 6.17 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -0.42 Total: -2.32 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.03 Total: -48.09 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -0.69 Total: -10.63 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -2.26 Total: -2.10 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -27.19 -9.18 -36.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413411653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.155 kcal (2) G-P(sol) polarization free energy of solvation -27.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds