Wall clock time and date at job start Sat Apr 11 2020 05:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45202 * 109.47548 * 2 1 4 4 C 1.34218 * 117.00461 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00190 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00496 * 179.97438 * 4 3 2 7 7 S 1.81398 * 109.47356 * 180.02562 * 6 4 3 8 8 C 1.76197 * 102.99805 * 180.02562 * 7 6 4 9 9 C 1.39237 * 120.04812 * 180.02562 * 8 7 6 10 10 N 1.32010 * 120.07397 * 179.97438 * 9 8 7 11 11 C 1.32094 * 120.18058 * 359.97438 * 10 9 8 12 12 C 1.39136 * 120.09376 * 0.02562 * 11 10 9 13 13 N 1.38993 * 120.03477 * 180.02562 * 12 11 10 14 14 C 1.46501 * 120.00069 * 359.97438 * 13 12 11 15 15 C 1.53004 * 109.46739 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.47235 * 299.99477 * 15 14 13 17 17 C 1.52993 * 109.47506 * 59.99875 * 15 14 13 18 18 C 1.50703 * 109.46895 * 180.02562 * 15 14 13 19 19 H 1.08005 * 119.99848 * 359.97438 * 18 15 14 20 20 C 1.37873 * 120.00059 * 179.97438 * 18 15 14 21 21 N 1.31520 * 120.00078 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 120.00040 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.47353 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47552 * 120.00045 * 22 20 18 25 25 H 1.48503 * 109.46949 * 239.99745 * 22 20 18 26 26 N 1.32751 * 119.92254 * 359.97438 * 12 11 10 27 27 H 1.09000 * 109.46859 * 59.99660 * 1 2 3 28 28 H 1.08999 * 109.47398 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46879 * 300.00187 * 1 2 3 30 30 H 1.08996 * 109.47299 * 240.00146 * 2 1 3 31 31 H 1.09007 * 109.47136 * 119.99733 * 2 1 3 32 32 H 1.09005 * 109.46414 * 60.00035 * 6 4 3 33 33 H 1.09002 * 109.46888 * 300.00732 * 6 4 3 34 34 H 1.07998 * 119.96646 * 359.97184 * 9 8 7 35 35 H 1.07999 * 119.95301 * 179.97438 * 11 10 9 36 36 H 0.96999 * 120.00078 * 179.97438 * 13 12 11 37 37 H 1.08998 * 109.46835 * 299.99602 * 14 13 12 38 38 H 1.08997 * 109.47320 * 60.00442 * 14 13 12 39 39 H 1.09002 * 109.46728 * 60.00163 * 16 15 14 40 40 H 1.08997 * 109.47348 * 180.02562 * 16 15 14 41 41 H 1.09000 * 109.47384 * 300.00758 * 16 15 14 42 42 H 1.09003 * 109.47098 * 59.99993 * 17 15 14 43 43 H 1.08997 * 109.47158 * 179.97438 * 17 15 14 44 44 H 1.08997 * 109.47164 * 299.99716 * 17 15 14 45 45 H 0.96999 * 119.99661 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 16 5.7323 2.8424 0.0001 8 6 6.2180 4.5361 0.0002 9 6 7.5687 4.8740 -0.0002 10 7 7.9332 6.1428 -0.0006 11 6 7.0190 7.0963 -0.0012 12 6 5.6672 6.7668 -0.0008 13 7 4.7063 7.7711 -0.0019 14 6 5.1167 9.1775 -0.0030 15 6 3.8746 10.0711 -0.0035 16 6 3.0393 9.7826 -1.2525 17 6 3.0395 9.7844 1.2460 18 6 4.2967 11.5178 -0.0052 19 1 5.3459 11.7742 -0.0055 20 6 3.3435 12.5140 -0.0064 21 7 2.0659 12.2017 -0.0066 22 14 3.8667 14.3072 -0.0093 23 1 5.3493 14.3903 -0.0092 24 1 3.3330 14.9767 -1.2226 25 1 3.3335 14.9803 1.2023 26 7 5.2963 5.4922 -0.0003 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 3.5844 3.4700 0.8896 33 1 3.5852 3.4690 -0.8904 34 1 8.3191 4.0974 -0.0001 35 1 7.3213 8.1332 -0.0011 36 1 3.7641 7.5409 -0.0020 37 1 5.7113 9.3831 0.8870 38 1 5.7119 9.3817 -0.8930 39 1 2.7341 8.7362 -1.2517 40 1 2.1548 10.4195 -1.2531 41 1 3.6343 9.9868 -2.1427 42 1 3.6346 9.9899 2.1358 43 1 2.1550 10.4213 1.2458 44 1 2.7343 8.7380 1.2467 45 1 1.3954 12.9026 -0.0079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413411653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:54 Heat of formation + Delta-G solvation = -54.998497 kcal Electronic energy + Delta-G solvation = -26222.789175 eV Core-core repulsion = 22366.247347 eV Total energy + Delta-G solvation = -3856.541828 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.87775 -41.62546 -38.84427 -37.88218 -36.06245 -34.94417 -33.12899 -32.98025 -31.20038 -30.61577 -27.57867 -27.56919 -26.79338 -25.60302 -24.56052 -24.00160 -22.41035 -20.70538 -19.53501 -18.93971 -18.64157 -18.01969 -17.95244 -17.59601 -17.33093 -16.83875 -16.48288 -16.33625 -15.66929 -15.57242 -15.18439 -15.00923 -14.67684 -14.46506 -14.21280 -14.16415 -13.70584 -13.54026 -13.37184 -13.10315 -12.96450 -12.85833 -12.60975 -12.55661 -12.53755 -12.47839 -12.31506 -12.11204 -11.87046 -11.76796 -11.72982 -11.59432 -11.31562 -11.20624 -10.70239 -10.38329 -10.18258 -9.25796 -8.48764 -8.01241 -6.17046 -0.19815 -0.05235 0.29308 0.83000 0.90983 1.43324 1.48639 1.56426 1.62471 2.13404 2.48736 2.71447 3.23713 3.43683 3.47337 3.55022 3.81716 3.84670 3.99814 4.03235 4.17385 4.24173 4.32811 4.33745 4.43756 4.51675 4.70553 4.77868 4.90850 4.92758 5.04972 5.08660 5.09220 5.18954 5.23100 5.34529 5.43312 5.65640 5.67860 5.69317 6.12456 6.20137 6.39490 6.41983 6.45632 6.55067 6.87884 6.93039 7.51523 8.97996 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013111 B = 0.002384 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.023250 B =11739.726127 C =13667.781742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.354 6.354 4 C 0.489 3.511 5 O -0.518 6.518 6 C -0.117 4.117 7 S 0.032 5.968 8 C 0.101 3.899 9 C -0.009 4.009 10 N -0.398 5.398 11 C -0.031 4.031 12 C 0.371 3.629 13 N -0.694 5.694 14 C 0.146 3.854 15 C 0.053 3.947 16 C -0.122 4.122 17 C -0.122 4.122 18 C -0.520 4.520 19 H 0.057 0.943 20 C 0.025 3.975 21 N -0.903 5.903 22 Si 0.945 3.055 23 H -0.268 1.268 24 H -0.286 1.286 25 H -0.286 1.286 26 N -0.528 5.528 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.191 0.809 35 H 0.173 0.827 36 H 0.405 0.595 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.027 0.973 40 H 0.059 0.941 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.059 0.941 44 H 0.028 0.972 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.491 -21.647 0.014 21.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.019 4.019 3 O -0.271 6.271 4 C 0.332 3.668 5 O -0.407 6.407 6 C -0.265 4.265 7 S 0.270 5.730 8 C -0.151 4.151 9 C -0.177 4.177 10 N -0.111 5.111 11 C -0.202 4.202 12 C 0.127 3.873 13 N -0.324 5.324 14 C 0.023 3.977 15 C 0.053 3.947 16 C -0.180 4.180 17 C -0.180 4.180 18 C -0.559 4.559 19 H 0.075 0.925 20 C -0.175 4.175 21 N -0.542 5.542 22 Si 0.772 3.228 23 H -0.193 1.193 24 H -0.213 1.213 25 H -0.213 1.213 26 N -0.257 5.257 27 H 0.086 0.914 28 H 0.121 0.879 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.207 0.793 35 H 0.190 0.810 36 H 0.243 0.757 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.046 0.954 40 H 0.078 0.922 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.077 0.923 44 H 0.046 0.954 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.160 -22.686 0.014 22.715 hybrid contribution -1.178 2.289 0.000 2.574 sum -0.018 -20.397 0.014 20.397 Atomic orbital electron populations 1.21853 0.90519 1.04531 1.03714 1.23407 0.96973 0.78400 1.03157 1.86504 1.22692 1.34541 1.83369 1.22608 0.81446 0.90743 0.72048 1.90708 1.60681 1.43214 1.46129 1.23199 0.96677 0.95254 1.11409 1.85998 1.00911 0.95265 1.90828 1.24368 0.93908 0.99139 0.97727 1.23232 0.93807 0.94323 1.06300 1.68223 1.36466 1.00685 1.05760 1.23175 0.88065 1.00751 1.08170 1.19465 0.89868 0.87536 0.90383 1.44906 1.07277 1.03667 1.76538 1.21613 0.98552 0.77180 1.00357 1.18316 0.90780 0.92779 0.92848 1.21683 1.01275 0.97759 0.97278 1.21680 1.01264 0.97768 0.97277 1.21313 0.92907 0.91074 1.50605 0.92498 1.25490 0.95072 1.02032 0.94903 1.69942 1.00237 1.33016 1.50994 0.85709 0.78574 0.81395 0.77125 1.19271 1.21260 1.21268 1.68292 1.35974 0.99252 1.22221 0.91378 0.87872 0.91385 0.90691 0.90691 0.84013 0.84016 0.79262 0.80981 0.75736 0.92247 0.92240 0.95369 0.92242 0.95829 0.95822 0.92257 0.95358 0.93256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.29 71.98 0.74 -0.58 16 2 C 0.05 0.73 6.19 71.98 0.45 1.18 16 3 O -0.35 -6.54 10.22 -51.30 -0.52 -7.07 16 4 C 0.49 10.04 7.98 71.24 0.57 10.60 16 5 O -0.52 -12.89 15.61 21.97 0.34 -12.55 16 6 C -0.12 -2.23 5.82 71.24 0.41 -1.81 16 7 S 0.03 0.69 21.06 -56.49 -1.19 -0.50 16 8 C 0.10 2.61 7.00 84.79 0.59 3.21 16 9 C -0.01 -0.22 10.97 84.91 0.93 0.71 16 10 N -0.40 -11.60 10.48 -194.04 -2.03 -13.63 16 11 C -0.03 -0.92 10.48 84.87 0.89 -0.03 16 12 C 0.37 11.40 7.66 132.96 1.02 12.42 16 13 N -0.69 -22.06 5.13 -344.81 -1.77 -23.83 16 14 C 0.15 5.18 3.73 86.38 0.32 5.50 16 15 C 0.05 2.27 0.50 -52.93 -0.03 2.25 16 16 C -0.12 -5.22 8.08 71.98 0.58 -4.64 16 17 C -0.12 -5.22 8.08 71.98 0.58 -4.64 16 18 C -0.52 -25.30 8.01 25.60 0.21 -25.09 16 19 H 0.06 2.73 7.74 -2.91 -0.02 2.71 16 20 C 0.02 1.23 5.15 84.65 0.44 1.67 16 21 N -0.90 -47.04 9.35 21.45 0.20 -46.84 16 22 Si 0.94 40.78 29.54 68.60 2.03 42.80 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 26 N -0.53 -15.17 9.63 -189.02 -1.82 -16.99 16 27 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.98 8.13 -2.39 -0.02 0.96 16 31 H 0.07 0.98 8.13 -2.38 -0.02 0.96 16 32 H 0.14 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.14 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.19 3.67 8.06 -2.91 -0.02 3.65 16 35 H 0.17 4.83 6.71 -2.91 -0.02 4.81 16 36 H 0.41 12.93 6.29 -92.71 -0.58 12.35 16 37 H 0.06 2.07 7.94 -2.39 -0.02 2.05 16 38 H 0.06 2.08 7.94 -2.39 -0.02 2.06 16 39 H 0.03 1.05 6.86 -2.39 -0.02 1.03 16 40 H 0.06 2.89 6.07 -2.39 -0.01 2.88 16 41 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.06 2.88 6.07 -2.39 -0.01 2.87 16 44 H 0.03 1.05 6.86 -2.39 -0.02 1.03 16 45 H 0.26 13.04 8.31 -92.71 -0.77 12.27 16 Total: -1.00 -56.90 384.38 3.36 -53.54 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.43 Total: 24.33 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 7.70 Total: 0.73 kcal Atomic # 7 Polarization: -95.87 SS G_CDS: -5.42 Total: -101.29 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.18 Total: -19.62 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.80 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -1.19 Total: -0.50 kcal Total: -56.90 3.36 -53.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413411653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.461 kcal (2) G-P(sol) polarization free energy of solvation -56.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds