Wall clock time and date at job start Sat Apr 11 2020 05:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99608 * 2 1 4 4 C 1.50699 * 109.47001 * 275.57011 * 3 2 1 5 5 H 1.07991 * 119.99915 * 4.71824 * 4 3 2 6 6 C 1.37880 * 119.99535 * 184.71428 * 4 3 2 7 7 N 1.31514 * 120.00380 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99513 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47193 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47102 * 120.00417 * 8 6 4 11 11 H 1.48500 * 109.47382 * 239.99996 * 8 6 4 12 12 S 1.65598 * 120.00147 * 179.97438 * 2 1 3 13 13 O 1.42106 * 106.39814 * 159.56680 * 12 2 1 14 14 O 1.42094 * 106.40202 * 26.64927 * 12 2 1 15 15 N 1.65598 * 107.21821 * 273.10542 * 12 2 1 16 16 C 1.46505 * 119.99785 * 62.78052 * 15 12 2 17 17 C 1.50698 * 109.46868 * 164.43777 * 16 15 12 18 18 C 1.38308 * 119.91829 * 270.01224 * 17 16 15 19 19 C 1.38019 * 119.90877 * 180.02562 * 18 17 16 20 20 C 1.39079 * 120.03337 * 359.97438 * 19 18 17 21 21 C 1.38601 * 120.02546 * 359.87850 * 20 19 18 22 22 C 1.38123 * 119.91992 * 90.00023 * 17 16 15 23 23 C 1.50596 * 121.50154 * 180.23320 * 21 20 19 24 24 C 1.52855 * 110.49007 * 339.34264 * 23 21 20 25 25 C 1.53437 * 108.94723 * 51.27091 * 24 23 21 26 26 N 1.39922 * 119.13227 * 179.63987 * 20 19 18 27 27 H 1.09002 * 109.47051 * 270.00004 * 1 2 3 28 28 H 1.08994 * 109.47396 * 29.99818 * 1 2 3 29 29 H 1.09004 * 109.46913 * 150.00458 * 1 2 3 30 30 H 1.09000 * 109.47320 * 35.57385 * 3 2 1 31 31 H 1.09001 * 109.47107 * 155.57149 * 3 2 1 32 32 H 0.97002 * 120.00081 * 179.97438 * 7 6 4 33 33 H 0.97003 * 120.00162 * 242.77024 * 15 12 2 34 34 H 1.08990 * 109.47204 * 44.43454 * 16 15 12 35 35 H 1.09008 * 109.46614 * 284.43497 * 16 15 12 36 36 H 1.07991 * 120.04582 * 0.09174 * 18 17 16 37 37 H 1.07999 * 119.98419 * 179.97438 * 19 18 17 38 38 H 1.08005 * 119.84688 * 359.96811 * 22 17 16 39 39 H 1.09004 * 109.30084 * 219.03616 * 23 21 20 40 40 H 1.08995 * 109.14058 * 99.55617 * 23 21 20 41 41 H 1.08999 * 109.57905 * 171.14330 * 24 23 21 42 42 H 1.08997 * 109.57726 * 291.40390 * 24 23 21 43 43 H 1.09003 * 109.79069 * 56.43936 * 25 24 23 44 44 H 1.08996 * 109.79356 * 177.28877 * 25 24 23 45 45 H 0.96991 * 120.54270 * 346.72804 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3291 1.7728 -1.4141 5 1 1.8445 1.2456 -2.2225 6 6 3.0682 2.9070 -1.6756 7 7 3.6587 3.5487 -0.6912 8 14 3.2320 3.5312 -3.4286 9 1 2.4792 2.6374 -4.3448 10 1 2.6814 4.9076 -3.5174 11 1 4.6653 3.5456 -3.8171 12 16 2.2930 -1.4341 0.0006 13 8 3.5999 -1.1430 -0.4754 14 8 1.4386 -2.3910 -0.6103 15 7 2.4639 -1.9008 1.5803 16 6 1.2786 -2.1950 2.3895 17 6 1.6905 -2.9474 3.6286 18 6 1.7387 -4.3295 3.6123 19 6 2.1154 -5.0183 4.7475 20 6 2.4466 -4.3233 5.9057 21 6 2.4010 -2.9381 5.9203 22 6 2.0191 -2.2549 4.7776 23 6 2.7576 -2.1520 7.1543 24 6 2.6485 -3.0320 8.3994 25 6 3.4433 -4.3239 8.1676 26 7 2.8185 -5.0408 7.0479 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8901 -0.5138 30 1 1.6552 2.0014 0.5978 31 1 3.1894 1.1157 0.4250 32 1 4.1790 4.3464 -0.8753 33 1 3.3488 -1.9794 1.9698 34 1 0.5844 -2.8028 1.8093 35 1 0.7931 -1.2619 2.6755 36 1 1.4829 -4.8689 2.7124 37 1 2.1531 -6.0976 4.7363 38 1 1.9804 -1.1756 4.7844 39 1 2.0780 -1.3053 7.2511 40 1 3.7795 -1.7847 7.0611 41 1 3.0575 -2.5009 9.2590 42 1 1.6022 -3.2752 8.5843 43 1 4.4763 -4.0819 7.9178 44 1 3.4147 -4.9410 9.0656 45 1 2.6651 -5.9971 7.1010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420436664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:58 Heat of formation + Delta-G solvation = -54.607966 kcal Electronic energy + Delta-G solvation = -27228.690643 eV Core-core repulsion = 23372.165749 eV Total energy + Delta-G solvation = -3856.524894 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.27000 -37.24764 -36.48859 -35.43679 -35.07093 -34.53572 -33.52221 -32.39324 -30.59167 -29.75398 -27.72529 -26.03939 -25.01492 -24.46316 -22.95948 -22.27850 -22.18682 -19.58962 -18.79241 -17.63734 -17.22173 -16.72784 -16.47517 -16.40411 -15.89134 -15.34074 -14.93587 -14.69976 -14.44484 -14.20076 -13.88501 -13.69432 -13.56776 -13.44534 -13.22561 -13.15034 -12.78039 -12.39311 -12.24181 -12.12100 -11.97824 -11.55116 -11.46206 -11.35640 -11.26259 -11.09452 -11.03377 -10.94674 -10.77663 -10.64904 -10.46149 -10.10675 -10.00030 -9.70581 -9.22066 -8.79989 -8.41319 -8.01419 -7.53970 -6.03108 -4.06862 1.19226 1.32889 1.56185 3.19005 3.33353 3.41000 3.46079 3.53867 3.83165 4.25738 4.40440 4.48042 4.55007 4.65656 4.77808 4.82312 5.00434 5.13368 5.14530 5.23810 5.27428 5.32374 5.39486 5.44740 5.50809 5.59521 5.64744 5.72056 5.82110 5.85115 6.01691 6.03162 6.07599 6.18649 6.34880 6.37180 6.60922 6.66313 6.70987 7.13660 7.18933 7.33773 7.47736 7.48499 7.68786 7.94905 8.24799 8.96053 9.58329 11.05569 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019637 B = 0.002598 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.552155 B =10774.676024 C =11543.991507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.996 5.996 3 C 0.256 3.744 4 C -0.529 4.529 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.282 1.282 12 S 2.782 3.218 13 O -0.965 6.965 14 O -1.000 7.000 15 N -1.131 6.131 16 C 0.168 3.832 17 C -0.144 4.144 18 C -0.060 4.060 19 C -0.193 4.193 20 C 0.217 3.783 21 C -0.157 4.157 22 C -0.058 4.058 23 C -0.072 4.072 24 C -0.138 4.138 25 C 0.123 3.877 26 N -0.755 5.755 27 H 0.038 0.962 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.032 0.968 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.413 0.587 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.477 -15.504 20.045 25.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.839 5.839 3 C 0.134 3.866 4 C -0.568 4.568 5 H 0.079 0.921 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.208 1.208 12 S 2.790 3.210 13 O -0.949 6.949 14 O -0.983 6.983 15 N -0.890 5.890 16 C 0.042 3.958 17 C -0.147 4.147 18 C -0.079 4.079 19 C -0.215 4.215 20 C 0.115 3.885 21 C -0.161 4.161 22 C -0.077 4.077 23 C -0.110 4.110 24 C -0.176 4.176 25 C -0.002 4.002 26 N -0.386 5.386 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.246 0.754 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -4.166 -15.665 19.364 25.253 hybrid contribution 0.374 0.273 -0.370 0.593 sum -3.792 -15.391 18.994 24.739 Atomic orbital electron populations 1.21377 0.80348 1.03489 1.00117 1.57597 1.14194 1.23315 1.88766 1.19062 0.91245 0.78675 0.97581 1.21545 1.31602 1.10182 0.93502 0.92111 1.24941 0.95075 0.96582 0.97465 1.69929 1.33293 1.18959 1.31242 0.86464 0.78036 0.78435 0.84629 1.19647 1.20990 1.20808 1.01923 0.73331 0.72910 0.72882 1.93639 1.38706 1.84583 1.77962 1.93514 1.69059 1.61135 1.74591 1.56330 1.13964 1.85679 1.32978 1.19992 0.87108 0.98709 0.89955 1.19569 1.06322 0.93679 0.95179 1.20853 0.96216 0.93521 0.97353 1.20637 1.09063 0.99387 0.92407 1.17570 0.93642 0.90702 0.86586 1.19269 1.08542 0.91686 0.96598 1.20855 0.95904 0.99674 0.91297 1.20291 1.01986 0.97416 0.91258 1.21874 1.01206 0.96433 0.98081 1.21512 0.96069 0.93619 0.88970 1.44645 1.68951 1.09626 1.15427 0.94324 0.90452 0.91615 0.95041 0.93947 0.92776 0.75450 0.90251 0.91371 0.85779 0.86293 0.85739 0.90579 0.90998 0.90598 0.91300 0.92411 0.90478 0.76572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.59 10.69 59.85 0.64 2.23 16 2 N -1.00 -20.77 3.23 -123.05 -0.40 -21.16 16 3 C 0.26 6.48 5.10 -5.19 -0.03 6.46 16 4 C -0.53 -15.02 9.38 -34.44 -0.32 -15.34 16 5 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 8 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 S 2.78 56.06 6.09 -107.50 -0.65 55.41 16 13 O -0.97 -23.63 16.99 -57.17 -0.97 -24.60 16 14 O -1.00 -21.11 16.34 -57.17 -0.93 -22.04 16 15 N -1.13 -17.37 6.04 -11.65 -0.07 -17.45 16 16 C 0.17 2.17 6.38 -5.19 -0.03 2.14 16 17 C -0.14 -1.71 5.28 -104.64 -0.55 -2.26 16 18 C -0.06 -0.67 9.70 -39.64 -0.38 -1.06 16 19 C -0.19 -1.96 9.88 -39.35 -0.39 -2.34 16 20 C 0.22 2.19 6.48 -83.72 -0.54 1.65 16 21 C -0.16 -1.64 5.76 -104.44 -0.60 -2.24 16 22 C -0.06 -0.65 9.31 -39.53 -0.37 -1.02 16 23 C -0.07 -0.60 5.78 -28.01 -0.16 -0.76 16 24 C -0.14 -0.89 6.11 -26.58 -0.16 -1.05 16 25 C 0.12 0.75 7.12 -3.60 -0.03 0.73 16 26 N -0.75 -5.72 5.79 -58.10 -0.34 -6.06 16 27 H 0.04 0.53 8.05 -51.93 -0.42 0.11 16 28 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 29 H 0.07 1.06 7.05 -51.93 -0.37 0.69 16 30 H 0.03 0.80 8.11 -51.93 -0.42 0.38 16 31 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.41 5.90 8.65 -34.47 -0.30 5.60 16 34 H 0.08 1.00 7.74 -51.93 -0.40 0.60 16 35 H 0.07 0.81 7.99 -51.92 -0.42 0.40 16 36 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 39 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.40 2.29 8.86 -40.82 -0.36 1.93 16 LS Contribution 382.19 15.07 5.76 5.76 Total: -1.00 -35.19 382.19 -11.76 -46.95 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.84 Total: 3.00 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -3.03 Total: -11.20 kcal Atomic # 7 Polarization: -70.27 SS G_CDS: -0.07 Total: -70.34 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -1.91 Total: -46.65 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 56.06 SS G_CDS: -0.65 Total: 55.41 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.19 -11.76 -46.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420436664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.660 kcal (2) G-P(sol) polarization free energy of solvation -35.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds