Wall clock time and date at job start Sat Apr 11 2020 05:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 O 1.21287 * 120.00070 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00136 * 180.02562 * 4 3 2 7 7 C 1.46503 * 120.00242 * 180.02562 * 6 4 3 8 8 C 1.50708 * 109.47208 * 180.02562 * 7 6 4 9 9 C 1.33388 * 125.20084 * 90.00339 * 8 7 6 10 10 C 1.38420 * 114.91722 * 179.97438 * 9 8 7 11 11 C 1.33394 * 114.92370 * 0.02562 * 10 9 8 12 12 S 1.75880 * 125.20000 * 269.69608 * 8 7 6 13 13 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 14 14 O 1.21283 * 119.99750 * 180.02562 * 13 2 1 15 15 C 1.50702 * 119.99928 * 0.28128 * 13 2 1 16 16 H 1.08995 * 109.47357 * 39.71838 * 15 13 2 17 17 N 1.46895 * 109.46992 * 159.72213 * 15 13 2 18 18 C 1.52995 * 109.46732 * 279.72068 * 15 13 2 19 19 C 1.53009 * 109.47136 * 174.99999 * 18 15 13 20 20 C 1.50698 * 109.47293 * 179.97438 * 19 18 15 21 21 H 1.08004 * 119.99938 * 0.02562 * 20 19 18 22 22 C 1.37874 * 119.99700 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00235 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99716 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46806 * 90.00562 * 24 22 20 26 26 H 1.48506 * 109.46941 * 210.00199 * 24 22 20 27 27 H 1.48494 * 109.47401 * 330.00370 * 24 22 20 28 28 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 29 29 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 30 30 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 31 31 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 32 32 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 33 33 H 0.97003 * 120.00364 * 0.02562 * 6 4 3 34 34 H 1.08994 * 109.47101 * 299.99895 * 7 6 4 35 35 H 1.08996 * 109.47135 * 60.00066 * 7 6 4 36 36 H 1.07994 * 122.54171 * 359.94987 * 9 8 7 37 37 H 1.08003 * 122.54276 * 180.02562 * 10 9 8 38 38 H 1.07998 * 125.20078 * 180.02562 * 11 10 9 39 39 H 1.00901 * 111.00088 * 60.00223 * 17 15 13 40 40 H 1.00898 * 111.00134 * 183.95339 * 17 15 13 41 41 H 1.08995 * 109.47790 * 294.99945 * 18 15 13 42 42 H 1.09001 * 109.47648 * 55.00468 * 18 15 13 43 43 H 1.09003 * 109.46899 * 300.00304 * 19 18 15 44 44 H 1.09001 * 109.46469 * 59.99747 * 19 18 15 45 45 H 0.97000 * 120.00058 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 8 2.0543 1.0213 -2.3427 6 7 3.1115 2.8510 -1.6671 7 6 3.3553 3.2742 -3.0484 8 6 4.1099 4.5787 -3.0484 9 6 5.4384 4.6985 -3.0492 10 6 5.9065 6.0012 -3.0497 11 6 4.9581 6.9393 -3.0487 12 16 3.3735 6.1759 -3.0551 13 6 2.1390 -1.1672 0.0005 14 8 3.3518 -1.1671 0.0010 15 6 1.3855 -2.4723 -0.0053 16 1 0.5221 -2.3905 -0.6655 17 7 2.2679 -3.5449 -0.4837 18 6 0.9136 -2.7950 1.4138 19 6 0.0437 -4.0534 1.3883 20 6 -0.4206 -4.3717 2.7862 21 1 -0.1252 -3.7393 3.6104 22 6 -1.2234 -5.4694 3.0128 23 7 -1.5835 -6.2391 2.0090 24 14 -1.7984 -5.8643 4.7457 25 1 -3.0887 -5.1776 5.0075 26 1 -1.9815 -7.3315 4.8842 27 1 -0.7821 -5.3979 5.7228 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3632 -0.8900 -0.5138 31 1 1.6083 2.0285 0.5137 32 1 3.1499 1.1385 0.5139 33 1 3.4273 3.3967 -0.9299 34 1 3.9438 2.5145 -3.5626 35 1 2.4027 3.4050 -3.5617 36 1 6.0987 3.8440 -3.0491 37 1 6.9598 6.2400 -3.0507 38 1 5.1361 8.0045 -3.0492 39 1 3.0764 -3.6408 0.1122 40 1 1.7680 -4.4182 -0.5581 41 1 1.7788 -2.9644 2.0548 42 1 0.3318 -1.9591 1.8022 43 1 -0.8215 -3.8841 0.7473 44 1 0.6255 -4.8894 0.9999 45 1 -2.1480 -7.0117 2.1685 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424142359.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:18 Heat of formation + Delta-G solvation = -37.610288 kcal Electronic energy + Delta-G solvation = -26261.540645 eV Core-core repulsion = 22405.752825 eV Total energy + Delta-G solvation = -3855.787819 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.38807 -39.24829 -38.26461 -35.59474 -35.35874 -34.92135 -32.83771 -31.21841 -29.86227 -29.15842 -26.76043 -26.59610 -25.48623 -23.70600 -23.13723 -21.04289 -20.37354 -19.76869 -18.96001 -18.13171 -17.39666 -17.06770 -16.55282 -16.24745 -15.87606 -15.57388 -15.44028 -14.76803 -14.53985 -14.38608 -13.97363 -13.75825 -13.63757 -13.42437 -13.26291 -13.14500 -12.93083 -12.69472 -12.54476 -12.44001 -12.27242 -12.10807 -11.89532 -11.54909 -11.22456 -11.03424 -10.89666 -10.67733 -10.29646 -9.94591 -9.88323 -9.39517 -9.29336 -9.25081 -9.16763 -8.95696 -8.61425 -8.42407 -8.11353 -6.06946 -4.10093 0.41202 1.11958 1.50558 2.18091 2.48592 2.69885 3.02936 3.27546 3.32219 3.34523 3.37627 4.15799 4.40164 4.58942 4.60480 4.69771 4.82878 5.04451 5.06363 5.15237 5.17214 5.22210 5.28679 5.29262 5.32663 5.53331 5.63006 5.67925 5.76781 5.80250 5.93226 5.96906 6.06668 6.33036 6.39095 6.56233 6.90042 7.20385 7.35161 7.53696 7.62194 7.67696 7.90166 7.97285 8.02286 8.32756 8.43246 8.95860 9.54652 11.03891 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031154 B = 0.001765 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.554323 B =15861.626455 C =16146.548408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.604 5.604 3 C 0.100 3.900 4 C 0.497 3.503 5 O -0.521 6.521 6 N -0.731 5.731 7 C 0.195 3.805 8 C -0.203 4.203 9 C -0.114 4.114 10 C -0.138 4.138 11 C -0.208 4.208 12 S 0.113 5.887 13 C 0.534 3.466 14 O -0.537 6.537 15 C 0.077 3.923 16 H 0.099 0.901 17 N -0.830 5.830 18 C -0.138 4.138 19 C 0.024 3.976 20 C -0.523 4.523 21 H 0.054 0.946 22 C 0.058 3.942 23 N -0.892 5.892 24 Si 0.892 3.108 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.402 0.598 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.165 0.835 39 H 0.344 0.656 40 H 0.354 0.646 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.019 0.981 44 H 0.018 0.982 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.425 27.722 -8.978 30.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.338 5.338 3 C -0.028 4.028 4 C 0.282 3.718 5 O -0.395 6.395 6 N -0.386 5.386 7 C 0.069 3.931 8 C -0.321 4.321 9 C -0.146 4.146 10 C -0.169 4.169 11 C -0.344 4.344 12 S 0.377 5.623 13 C 0.324 3.676 14 O -0.413 6.413 15 C -0.038 4.038 16 H 0.117 0.883 17 N -0.362 5.362 18 C -0.177 4.177 19 C -0.013 4.013 20 C -0.561 4.561 21 H 0.073 0.927 22 C -0.143 4.143 23 N -0.531 5.531 24 Si 0.720 3.280 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.199 1.199 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.236 0.764 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.183 0.817 39 H 0.157 0.843 40 H 0.169 0.831 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.037 0.963 44 H 0.036 0.964 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.247 27.997 -10.383 31.259 hybrid contribution 0.996 -0.722 2.132 2.461 sum 10.243 27.275 -8.251 30.281 Atomic orbital electron populations 1.21917 0.78440 1.03697 1.02236 1.47412 1.07265 1.04391 1.74686 1.21191 1.00563 0.87726 0.93299 1.21457 0.77400 0.80136 0.92794 1.90745 1.49840 1.52858 1.46069 1.46083 1.59654 1.24787 1.08115 1.19587 0.99140 0.90098 0.84231 1.24510 0.97280 0.98041 1.12235 1.20282 0.94272 0.98304 1.01761 1.20223 1.00909 0.91878 1.03844 1.25750 0.95493 1.03650 1.09498 1.84442 1.08437 0.97243 1.72172 1.20923 0.87868 0.85203 0.73644 1.90610 1.14230 1.87226 1.49195 1.21502 0.95064 0.88931 0.98308 0.88293 1.58727 1.10918 1.09431 1.57160 1.22392 1.00623 1.01705 0.93027 1.19104 0.94041 0.90664 0.97471 1.21175 1.30721 1.10740 0.93505 0.92732 1.25011 0.96151 0.96186 0.96963 1.69950 1.36279 1.16272 1.30621 0.86591 0.79072 0.77513 0.84812 1.20639 1.21172 1.19925 0.91745 0.91485 0.90011 0.87520 0.86902 0.76410 0.89534 0.90408 0.83884 0.84024 0.81722 0.84262 0.83052 0.92740 0.92376 0.96296 0.96403 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 9.57 59.85 0.57 1.53 16 2 N -0.60 -8.58 2.36 -182.95 -0.43 -9.01 16 3 C 0.10 1.10 5.89 -5.20 -0.03 1.07 16 4 C 0.50 6.12 7.90 -10.99 -0.09 6.03 16 5 O -0.52 -8.80 16.43 5.55 0.09 -8.71 16 6 N -0.73 -6.43 5.55 -61.47 -0.34 -6.77 16 7 C 0.19 1.69 6.16 -5.19 -0.03 1.66 16 8 C -0.20 -1.47 5.88 -36.00 -0.21 -1.68 16 9 C -0.11 -0.77 10.05 -41.21 -0.41 -1.18 16 10 C -0.14 -0.80 10.18 -41.21 -0.42 -1.22 16 11 C -0.21 -1.15 11.23 29.04 0.33 -0.82 16 12 S 0.11 0.72 23.33 -107.50 -2.51 -1.79 16 13 C 0.53 9.54 6.92 -10.98 -0.08 9.46 16 14 O -0.54 -10.94 15.83 5.55 0.09 -10.85 16 15 C 0.08 1.39 2.47 -68.87 -0.17 1.22 16 16 H 0.10 1.75 6.30 -51.93 -0.33 1.43 16 17 N -0.83 -15.34 8.94 -5.66 -0.05 -15.39 16 18 C -0.14 -2.74 4.71 -26.73 -0.13 -2.86 16 19 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16 20 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 21 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 23 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 24 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 27 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 28 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 29 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 30 H 0.08 1.06 5.94 -51.93 -0.31 0.75 16 31 H 0.11 0.75 8.07 -51.93 -0.42 0.33 16 32 H 0.11 1.25 7.42 -51.93 -0.39 0.86 16 33 H 0.40 2.50 8.46 -40.82 -0.35 2.15 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 38 H 0.17 0.56 8.06 -52.49 -0.42 0.14 16 39 H 0.34 6.34 8.58 -39.29 -0.34 6.00 16 40 H 0.35 6.46 7.55 -39.29 -0.30 6.17 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.06 1.09 6.96 -51.93 -0.36 0.73 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 391.54 15.07 5.90 5.90 Total: -1.00 -35.24 391.54 -9.20 -44.45 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -6.46 Total: 10.67 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -1.21 Total: 0.58 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.09 Total: -56.45 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: 0.18 Total: -19.56 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.51 Total: -1.79 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.24 -9.20 -44.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424142359.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.835 kcal (2) G-P(sol) polarization free energy of solvation -35.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds