Wall clock time and date at job start Sat Apr 11 2020 05:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 O 1.21287 * 120.00070 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00136 * 180.02562 * 4 3 2 7 7 C 1.46503 * 120.00242 * 180.02562 * 6 4 3 8 8 C 1.50708 * 109.47208 * 180.02562 * 7 6 4 9 9 C 1.33388 * 125.20084 * 90.00339 * 8 7 6 10 10 C 1.38420 * 114.91722 * 179.97438 * 9 8 7 11 11 C 1.33394 * 114.92370 * 0.02562 * 10 9 8 12 12 S 1.75880 * 125.20000 * 269.69608 * 8 7 6 13 13 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 14 14 O 1.21283 * 119.99750 * 180.02562 * 13 2 1 15 15 C 1.50702 * 119.99928 * 0.28128 * 13 2 1 16 16 H 1.08995 * 109.47357 * 39.71838 * 15 13 2 17 17 N 1.46895 * 109.46992 * 159.72213 * 15 13 2 18 18 C 1.52995 * 109.46732 * 279.72068 * 15 13 2 19 19 C 1.53009 * 109.47136 * 174.99999 * 18 15 13 20 20 C 1.50698 * 109.47293 * 179.97438 * 19 18 15 21 21 H 1.08004 * 119.99938 * 0.02562 * 20 19 18 22 22 C 1.37874 * 119.99700 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00235 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99716 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46806 * 90.00562 * 24 22 20 26 26 H 1.48506 * 109.46941 * 210.00199 * 24 22 20 27 27 H 1.48494 * 109.47401 * 330.00370 * 24 22 20 28 28 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 29 29 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 30 30 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 31 31 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 32 32 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 33 33 H 0.97003 * 120.00364 * 0.02562 * 6 4 3 34 34 H 1.08994 * 109.47101 * 299.99895 * 7 6 4 35 35 H 1.08996 * 109.47135 * 60.00066 * 7 6 4 36 36 H 1.07994 * 122.54171 * 359.94987 * 9 8 7 37 37 H 1.08003 * 122.54276 * 180.02562 * 10 9 8 38 38 H 1.07998 * 125.20078 * 180.02562 * 11 10 9 39 39 H 1.00901 * 111.00088 * 60.00223 * 17 15 13 40 40 H 1.00898 * 111.00134 * 183.95339 * 17 15 13 41 41 H 1.08995 * 109.47790 * 294.99945 * 18 15 13 42 42 H 1.09001 * 109.47648 * 55.00468 * 18 15 13 43 43 H 1.09003 * 109.46899 * 300.00304 * 19 18 15 44 44 H 1.09001 * 109.46469 * 59.99747 * 19 18 15 45 45 H 0.97000 * 120.00058 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 8 2.0543 1.0213 -2.3427 6 7 3.1115 2.8510 -1.6671 7 6 3.3553 3.2742 -3.0484 8 6 4.1099 4.5787 -3.0484 9 6 5.4384 4.6985 -3.0492 10 6 5.9065 6.0012 -3.0497 11 6 4.9581 6.9393 -3.0487 12 16 3.3735 6.1759 -3.0551 13 6 2.1390 -1.1672 0.0005 14 8 3.3518 -1.1671 0.0010 15 6 1.3855 -2.4723 -0.0053 16 1 0.5221 -2.3905 -0.6655 17 7 2.2679 -3.5449 -0.4837 18 6 0.9136 -2.7950 1.4138 19 6 0.0437 -4.0534 1.3883 20 6 -0.4206 -4.3717 2.7862 21 1 -0.1252 -3.7393 3.6104 22 6 -1.2234 -5.4694 3.0128 23 7 -1.5835 -6.2391 2.0090 24 14 -1.7984 -5.8643 4.7457 25 1 -3.0887 -5.1776 5.0075 26 1 -1.9815 -7.3315 4.8842 27 1 -0.7821 -5.3979 5.7228 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3632 -0.8900 -0.5138 31 1 1.6083 2.0285 0.5137 32 1 3.1499 1.1385 0.5139 33 1 3.4273 3.3967 -0.9299 34 1 3.9438 2.5145 -3.5626 35 1 2.4027 3.4050 -3.5617 36 1 6.0987 3.8440 -3.0491 37 1 6.9598 6.2400 -3.0507 38 1 5.1361 8.0045 -3.0492 39 1 3.0764 -3.6408 0.1122 40 1 1.7680 -4.4182 -0.5581 41 1 1.7788 -2.9644 2.0548 42 1 0.3318 -1.9591 1.8022 43 1 -0.8215 -3.8841 0.7473 44 1 0.6255 -4.8894 0.9999 45 1 -2.1480 -7.0117 2.1685 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424142359.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:17 Heat of formation + Delta-G solvation = -63.185586 kcal Electronic energy + Delta-G solvation = -26262.649673 eV Core-core repulsion = 22405.752825 eV Total energy + Delta-G solvation = -3856.896847 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.52873 -40.35912 -38.84025 -37.12948 -36.56031 -35.83903 -34.83764 -31.94839 -31.68760 -30.07120 -28.17633 -27.48295 -26.72173 -25.14775 -23.86868 -22.41098 -21.68941 -20.34760 -20.14351 -18.99947 -18.74589 -18.21152 -17.90592 -17.41365 -16.77748 -16.50187 -16.46250 -16.27649 -15.85715 -15.71497 -15.42556 -14.99120 -14.57959 -14.53417 -14.45426 -13.98065 -13.90052 -13.74731 -13.64940 -13.54847 -13.30872 -13.24636 -12.97169 -12.86171 -12.71162 -12.57213 -12.50721 -11.77516 -11.70308 -11.69740 -11.33494 -11.28193 -10.73946 -10.54189 -10.23709 -9.90553 -9.68242 -9.58709 -9.43342 -8.19237 -6.29810 -0.08224 0.63050 1.04056 1.41015 1.42037 1.44206 1.52691 1.55328 1.71943 1.87666 2.41574 2.42207 3.14404 3.50797 3.56754 3.73133 3.80141 4.03852 4.13392 4.19373 4.21681 4.24033 4.30661 4.36111 4.52003 4.63626 4.65222 4.72030 4.76492 4.81090 4.96607 5.11267 5.15550 5.26718 5.31186 5.36730 5.48630 5.51123 5.66731 5.82131 6.01670 6.22199 6.27782 6.43221 6.47091 6.85646 7.07963 7.17349 7.39298 8.91572 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031154 B = 0.001765 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.554323 B =15861.626455 C =16146.548408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.599 5.599 3 C 0.096 3.904 4 C 0.496 3.504 5 O -0.574 6.574 6 N -0.713 5.713 7 C 0.198 3.802 8 C -0.217 4.217 9 C -0.115 4.115 10 C -0.148 4.148 11 C -0.201 4.201 12 S 0.110 5.890 13 C 0.530 3.470 14 O -0.569 6.569 15 C 0.081 3.919 16 H 0.102 0.898 17 N -0.833 5.833 18 C -0.118 4.118 19 C 0.030 3.970 20 C -0.542 4.542 21 H 0.057 0.943 22 C 0.004 3.996 23 N -0.928 5.928 24 Si 0.960 3.040 25 H -0.271 1.271 26 H -0.285 1.285 27 H -0.267 1.267 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.155 0.845 32 H 0.115 0.885 33 H 0.416 0.584 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.146 0.854 37 H 0.161 0.839 38 H 0.188 0.812 39 H 0.344 0.656 40 H 0.352 0.648 41 H 0.046 0.954 42 H 0.072 0.928 43 H 0.001 0.999 44 H 0.000 1.000 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.581 30.284 -7.662 32.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.331 5.331 3 C -0.031 4.031 4 C 0.282 3.718 5 O -0.452 6.452 6 N -0.367 5.367 7 C 0.073 3.927 8 C -0.335 4.335 9 C -0.147 4.147 10 C -0.178 4.178 11 C -0.337 4.337 12 S 0.374 5.626 13 C 0.319 3.681 14 O -0.448 6.448 15 C -0.034 4.034 16 H 0.120 0.880 17 N -0.365 5.365 18 C -0.157 4.157 19 C -0.007 4.007 20 C -0.580 4.580 21 H 0.076 0.924 22 C -0.194 4.194 23 N -0.567 5.567 24 Si 0.785 3.215 25 H -0.196 1.196 26 H -0.210 1.210 27 H -0.191 1.191 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.173 0.827 32 H 0.133 0.867 33 H 0.253 0.747 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.164 0.836 37 H 0.178 0.822 38 H 0.205 0.795 39 H 0.157 0.843 40 H 0.167 0.833 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.019 0.981 44 H 0.018 0.982 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.404 30.639 -9.047 33.302 hybrid contribution 0.975 -1.416 1.662 2.391 sum 10.379 29.223 -7.385 31.878 Atomic orbital electron populations 1.22097 0.77057 1.04286 1.03359 1.47442 1.08265 1.04511 1.72858 1.21531 1.01364 0.87272 0.92890 1.21684 0.76991 0.80331 0.92753 1.90729 1.52350 1.54633 1.47538 1.45947 1.58065 1.23810 1.08899 1.19472 0.98807 0.90644 0.83802 1.24328 0.97479 0.97746 1.13920 1.20469 0.94146 0.99106 1.01003 1.20434 1.02032 0.91360 1.03944 1.26084 0.94663 1.04786 1.08182 1.84449 1.09208 0.96691 1.72245 1.20744 0.87448 0.86014 0.73911 1.90588 1.15320 1.87789 1.51079 1.21429 0.95273 0.89582 0.97131 0.88000 1.58739 1.11006 1.09543 1.57189 1.22112 0.99486 0.99957 0.94187 1.18967 0.93767 0.92135 0.95839 1.21607 1.30720 1.10922 0.94775 0.92425 1.25884 0.96334 0.96106 1.01091 1.70073 1.37040 1.16806 1.32827 0.85519 0.78883 0.77231 0.79836 1.19640 1.21019 1.19118 0.90200 0.89062 0.91417 0.82735 0.86690 0.74657 0.90989 0.91066 0.83616 0.82189 0.79480 0.84283 0.83257 0.93557 0.90970 0.98061 0.98210 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.64 9.57 127.77 1.22 2.86 16 2 N -0.60 -16.18 2.36 -851.12 -2.01 -18.19 16 3 C 0.10 1.90 5.89 85.63 0.50 2.40 16 4 C 0.50 11.75 7.90 87.66 0.69 12.44 16 5 O -0.57 -19.49 16.43 -3.05 -0.05 -19.54 16 6 N -0.71 -11.74 5.55 -466.78 -2.59 -14.33 16 7 C 0.20 3.40 6.16 85.63 0.53 3.93 16 8 C -0.22 -2.94 5.88 24.59 0.14 -2.79 16 9 C -0.11 -1.40 10.05 21.22 0.21 -1.19 16 10 C -0.15 -1.41 10.18 21.22 0.22 -1.19 16 11 C -0.20 -1.75 11.23 66.72 0.75 -1.00 16 12 S 0.11 1.24 23.33 -56.49 -1.32 -0.08 16 13 C 0.53 18.74 6.92 87.66 0.61 19.35 16 14 O -0.57 -23.20 15.83 -3.04 -0.05 -23.25 16 15 C 0.08 2.95 2.47 44.17 0.11 3.06 16 16 H 0.10 3.66 6.30 -2.39 -0.02 3.65 16 17 N -0.83 -31.49 8.94 -171.82 -1.54 -33.03 16 18 C -0.12 -4.66 4.71 30.60 0.14 -4.52 16 19 C 0.03 1.49 4.74 29.85 0.14 1.63 16 20 C -0.54 -29.67 9.11 25.60 0.23 -29.43 16 21 H 0.06 3.05 7.74 -2.91 -0.02 3.02 16 22 C 0.00 0.23 5.46 84.65 0.46 0.70 16 23 N -0.93 -54.68 13.29 21.45 0.28 -54.39 16 24 Si 0.96 43.22 29.54 68.60 2.03 45.25 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 28 H 0.08 1.55 7.66 -2.39 -0.02 1.53 16 29 H 0.09 1.59 8.07 -2.39 -0.02 1.57 16 30 H 0.07 1.71 5.94 -2.39 -0.01 1.69 16 31 H 0.16 1.56 8.07 -2.39 -0.02 1.54 16 32 H 0.12 2.32 7.42 -2.38 -0.02 2.30 16 33 H 0.42 4.38 8.46 -92.71 -0.78 3.60 16 34 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 37 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 38 H 0.19 0.70 8.06 -2.91 -0.02 0.68 16 39 H 0.34 12.97 8.58 -89.69 -0.77 12.20 16 40 H 0.35 13.33 7.55 -89.70 -0.68 12.65 16 41 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 42 H 0.07 2.63 6.96 -2.39 -0.02 2.61 16 43 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.00 -0.02 6.87 -2.39 -0.02 -0.04 16 45 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -76.67 391.54 -0.46 -77.13 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: -1.19 Total: 34.19 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 5.97 Total: 6.25 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -5.85 Total: -119.94 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -0.10 Total: -42.79 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -1.32 Total: -0.08 kcal Total: -76.67 -0.46 -77.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424142359.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.944 kcal (2) G-P(sol) polarization free energy of solvation -76.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds