Wall clock time and date at job start Sat Apr 11 2020 05:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46509 * 119.99622 * 2 1 4 4 C 1.50696 * 109.46680 * 274.99577 * 3 2 1 5 5 H 1.07995 * 120.00470 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99316 * 180.02562 * 4 3 2 7 7 N 1.31524 * 119.99740 * 180.02562 * 6 4 3 8 8 Si 1.86793 * 120.00451 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47032 * 89.99939 * 8 6 4 10 10 H 1.48497 * 109.47378 * 210.00036 * 8 6 4 11 11 H 1.48500 * 109.47346 * 330.00081 * 8 6 4 12 12 S 1.65593 * 120.00350 * 179.97438 * 2 1 3 13 13 O 1.42103 * 106.40439 * 156.46123 * 12 2 1 14 14 O 1.42107 * 106.40058 * 23.54472 * 12 2 1 15 15 N 1.65606 * 107.22067 * 270.00352 * 12 2 1 16 16 C 1.46498 * 119.99561 * 64.99894 * 15 12 2 17 17 C 1.50704 * 109.46829 * 165.00102 * 16 15 12 18 18 C 1.38240 * 119.69436 * 94.99708 * 17 16 15 19 19 C 1.38406 * 118.84236 * 180.11141 * 18 17 16 20 20 C 1.39181 * 118.87113 * 359.97193 * 19 18 17 21 21 C 1.37552 * 119.19065 * 359.88211 * 20 19 18 22 22 N 1.31503 * 119.69540 * 274.97701 * 17 16 15 23 23 C 1.50725 * 122.38269 * 180.35816 * 21 20 19 24 24 C 1.52725 * 110.53894 * 342.21373 * 23 21 20 25 25 C 1.53328 * 108.42408 * 51.29189 * 24 23 21 26 26 C 1.50496 * 117.97713 * 179.79295 * 20 19 18 27 27 H 1.08994 * 109.47169 * 269.99976 * 1 2 3 28 28 H 1.09003 * 109.46788 * 30.00508 * 1 2 3 29 29 H 1.08998 * 109.46491 * 149.99761 * 1 2 3 30 30 H 1.08996 * 109.46694 * 34.99991 * 3 2 1 31 31 H 1.09004 * 109.46543 * 154.99526 * 3 2 1 32 32 H 0.96998 * 119.99876 * 179.97438 * 7 6 4 33 33 H 0.96995 * 119.99650 * 244.99594 * 15 12 2 34 34 H 1.08996 * 109.47732 * 45.00083 * 16 15 12 35 35 H 1.09001 * 109.47212 * 284.99629 * 16 15 12 36 36 H 1.08004 * 120.57750 * 0.08670 * 18 17 16 37 37 H 1.08002 * 120.56449 * 179.97438 * 19 18 17 38 38 H 1.09002 * 109.25923 * 221.95122 * 23 21 20 39 39 H 1.08998 * 109.25761 * 102.47520 * 23 21 20 40 40 H 1.08996 * 109.67009 * 171.02172 * 24 23 21 41 41 H 1.08996 * 109.67595 * 291.56019 * 24 23 21 42 42 H 1.08997 * 109.68911 * 49.81945 * 25 24 23 43 43 H 1.09002 * 109.68906 * 170.38604 * 25 24 23 44 44 H 1.09003 * 109.25759 * 42.42459 * 26 20 19 45 45 H 1.08999 * 109.25774 * 282.98960 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2689 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9283 1.1938 -2.2331 6 6 3.0006 2.9504 -1.6664 7 7 3.1258 3.3843 -2.9017 8 14 3.7158 3.9391 -0.2522 9 1 5.1128 3.5033 -0.0002 10 1 3.7029 5.3825 -0.6009 11 1 2.9003 3.7177 0.9689 12 16 2.2931 -1.4340 0.0006 13 8 3.5761 -1.1569 -0.5439 14 8 1.4115 -2.4067 -0.5435 15 7 2.5382 -1.8579 1.5827 16 6 1.3946 -2.1768 2.4410 17 6 1.8801 -2.8728 3.6865 18 6 2.1173 -2.1381 4.8332 19 6 2.5651 -2.7949 5.9662 20 6 2.7603 -4.1718 5.9118 21 6 2.5013 -4.8403 4.7379 22 7 2.0738 -4.1734 3.6725 23 6 2.6803 -6.3306 4.6011 24 6 3.5637 -6.8695 5.7243 25 6 3.0056 -6.3697 7.0620 26 6 3.2521 -4.8648 7.1539 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3632 -0.8900 -0.5139 30 1 1.6501 2.0043 0.5894 31 1 3.1858 1.1178 0.4344 32 1 3.5892 4.2179 -3.0782 33 1 3.4388 -1.8951 1.9408 34 1 0.7080 -2.8308 1.9036 35 1 0.8794 -1.2566 2.7165 36 1 1.9564 -1.0702 4.8446 37 1 2.7596 -2.2482 6.8771 38 1 3.1462 -6.5501 3.6405 39 1 1.7051 -6.8154 4.6467 40 1 3.5549 -7.9593 5.7072 41 1 4.5838 -6.5082 5.5943 42 1 1.9353 -6.5701 7.1113 43 1 3.5126 -6.8757 7.8836 44 1 2.7247 -4.4663 8.0207 45 1 4.3205 -4.6819 7.2686 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000443935400.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:37 Heat of formation + Delta-G solvation = -50.803315 kcal Electronic energy + Delta-G solvation = -27315.678492 eV Core-core repulsion = 23459.318580 eV Total energy + Delta-G solvation = -3856.359912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.98273 -37.40173 -36.62879 -35.63757 -35.18781 -34.87221 -33.58014 -32.37366 -30.81556 -30.02974 -28.38830 -26.57221 -25.15158 -23.96627 -23.12449 -22.39548 -21.90432 -20.05516 -19.03939 -17.44399 -17.11235 -16.91222 -16.86430 -16.30581 -15.96873 -15.48806 -15.01805 -14.57409 -14.35569 -14.29521 -14.16759 -13.92338 -13.69942 -13.51317 -13.15120 -12.99409 -12.80936 -12.57353 -12.51166 -12.34864 -12.05446 -11.73080 -11.56643 -11.42762 -11.34423 -11.33533 -11.20684 -11.19506 -10.90928 -10.66930 -10.45245 -10.24992 -9.90210 -9.58852 -9.56245 -9.42190 -8.95580 -8.58848 -8.12797 -6.07495 -4.06770 0.72372 0.99527 1.23761 3.26280 3.30192 3.32097 3.35209 3.64579 3.79600 4.12737 4.23660 4.31610 4.38506 4.46966 4.50473 4.57823 4.72455 4.91776 4.99020 5.06594 5.11704 5.17064 5.23076 5.25282 5.38025 5.41471 5.45540 5.51571 5.55871 5.58177 5.63242 5.76945 5.85411 5.88662 5.90584 5.95895 6.05984 6.22931 6.44389 6.46091 6.71290 6.99396 7.12659 7.42035 7.58498 7.80530 8.49725 8.97781 9.51344 11.06124 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019933 B = 0.002721 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.362491 B =10288.825892 C =10918.923195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.990 5.990 3 C 0.227 3.773 4 C -0.532 4.532 5 H 0.078 0.922 6 C 0.072 3.928 7 N -0.895 5.895 8 Si 0.873 3.127 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.265 1.265 12 S 2.784 3.216 13 O -0.960 6.960 14 O -0.989 6.989 15 N -1.128 6.128 16 C 0.174 3.826 17 C 0.125 3.875 18 C -0.159 4.159 19 C -0.078 4.078 20 C -0.127 4.127 21 C 0.134 3.866 22 N -0.470 5.470 23 C -0.070 4.070 24 C -0.120 4.120 25 C -0.121 4.121 26 C -0.076 4.076 27 H 0.039 0.961 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.029 0.971 32 H 0.265 0.735 33 H 0.412 0.588 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.756 -16.405 24.246 29.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.833 5.833 3 C 0.104 3.896 4 C -0.571 4.571 5 H 0.096 0.904 6 C -0.131 4.131 7 N -0.533 5.533 8 Si 0.700 3.300 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 S 2.791 3.209 13 O -0.944 6.944 14 O -0.972 6.972 15 N -0.886 5.886 16 C 0.047 3.953 17 C -0.016 4.016 18 C -0.179 4.179 19 C -0.104 4.104 20 C -0.130 4.130 21 C -0.002 4.002 22 N -0.180 5.180 23 C -0.107 4.107 24 C -0.158 4.158 25 C -0.159 4.159 26 C -0.114 4.114 27 H 0.058 0.942 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.245 0.755 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.157 0.843 37 H 0.153 0.847 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.783 -17.188 22.506 28.454 hybrid contribution 0.873 1.551 1.876 2.586 sum -1.909 -15.637 24.382 29.028 Atomic orbital electron populations 1.21423 0.79684 1.04089 1.00220 1.57397 1.14492 1.22541 1.88826 1.19436 0.90834 0.80723 0.98608 1.21385 1.36780 1.07022 0.91888 0.90393 1.24884 0.95404 0.97226 0.95544 1.69902 1.42570 1.21994 1.18861 0.86905 0.80378 0.79686 0.83025 1.19845 1.20998 1.18971 1.01955 0.73448 0.72896 0.72604 1.93654 1.40643 1.84817 1.75246 1.93541 1.67500 1.59693 1.76485 1.56259 1.14185 1.86059 1.32141 1.20013 0.88423 0.98592 0.88320 1.21063 0.96305 0.89575 0.94679 1.22019 1.00853 1.01609 0.93457 1.21590 0.96402 0.93700 0.98706 1.20469 1.01497 0.94398 0.96598 1.21047 0.94692 0.96391 0.88082 1.67400 1.11542 1.09352 1.29676 1.20374 1.01213 0.88922 1.00241 1.21580 0.99390 1.00741 0.94065 1.21578 1.01669 0.94874 0.97763 1.20418 1.01377 0.95255 0.94339 0.94215 0.90075 0.91150 0.94857 0.95322 0.92535 0.75503 0.88753 0.90193 0.84278 0.84747 0.89522 0.89800 0.90795 0.91412 0.91447 0.91126 0.90588 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.50 10.68 59.85 0.64 2.14 16 2 N -0.99 -19.75 3.23 -123.05 -0.40 -20.15 16 3 C 0.23 5.29 4.15 -5.19 -0.02 5.27 16 4 C -0.53 -15.17 9.94 -34.44 -0.34 -15.51 16 5 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 6 C 0.07 2.09 5.47 -17.81 -0.10 2.00 16 7 N -0.89 -27.62 13.96 55.43 0.77 -26.84 16 8 Si 0.87 21.01 27.47 -169.99 -4.67 16.34 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 12 S 2.78 54.82 6.10 -107.50 -0.66 54.17 16 13 O -0.96 -22.97 17.11 -57.17 -0.98 -23.94 16 14 O -0.99 -20.85 16.21 -57.17 -0.93 -21.78 16 15 N -1.13 -16.80 6.05 -11.66 -0.07 -16.87 16 16 C 0.17 2.18 6.56 -5.19 -0.03 2.15 16 17 C 0.13 1.51 6.18 -82.73 -0.51 1.00 16 18 C -0.16 -1.56 9.74 -39.52 -0.38 -1.95 16 19 C -0.08 -0.67 9.75 -39.17 -0.38 -1.06 16 20 C -0.13 -1.14 5.74 -104.62 -0.60 -1.74 16 21 C 0.13 1.44 6.62 -82.43 -0.55 0.89 16 22 N -0.47 -6.14 10.10 -5.77 -0.06 -6.20 16 23 C -0.07 -0.58 5.92 -28.01 -0.17 -0.75 16 24 C -0.12 -0.72 5.97 -26.70 -0.16 -0.88 16 25 C -0.12 -0.65 5.98 -26.68 -0.16 -0.81 16 26 C -0.08 -0.46 5.68 -28.10 -0.16 -0.62 16 27 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 29 H 0.07 1.12 7.02 -51.93 -0.36 0.75 16 30 H 0.03 0.73 7.17 -51.93 -0.37 0.36 16 31 H 0.03 0.67 7.04 -51.93 -0.37 0.30 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.41 5.65 8.64 -34.47 -0.30 5.35 16 34 H 0.09 1.24 7.75 -51.93 -0.40 0.84 16 35 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 36 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 37 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 42 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 43 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.08 0.37 8.13 -51.93 -0.42 -0.05 16 45 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 378.74 15.07 5.71 5.71 Total: -1.00 -36.67 378.74 -11.07 -47.74 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -6.87 Total: 1.69 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -2.92 Total: -9.86 kcal Atomic # 7 Polarization: -70.31 SS G_CDS: 0.25 Total: -70.06 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -1.91 Total: -45.72 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Atomic # 16 Polarization: 54.82 SS G_CDS: -0.66 Total: 54.17 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.67 -11.07 -47.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443935400.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.059 kcal (2) G-P(sol) polarization free energy of solvation -36.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds