Wall clock time and date at job start Sat Apr 11 2020 05:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46509 * 119.99622 * 2 1 4 4 C 1.50696 * 109.46680 * 274.99577 * 3 2 1 5 5 H 1.07995 * 120.00470 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99316 * 180.02562 * 4 3 2 7 7 N 1.31524 * 119.99740 * 180.02562 * 6 4 3 8 8 Si 1.86793 * 120.00451 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47032 * 89.99939 * 8 6 4 10 10 H 1.48497 * 109.47378 * 210.00036 * 8 6 4 11 11 H 1.48500 * 109.47346 * 330.00081 * 8 6 4 12 12 S 1.65593 * 120.00350 * 179.97438 * 2 1 3 13 13 O 1.42103 * 106.40439 * 156.46123 * 12 2 1 14 14 O 1.42107 * 106.40058 * 23.54472 * 12 2 1 15 15 N 1.65606 * 107.22067 * 270.00352 * 12 2 1 16 16 C 1.46498 * 119.99561 * 64.99894 * 15 12 2 17 17 C 1.50704 * 109.46829 * 165.00102 * 16 15 12 18 18 C 1.38240 * 119.69436 * 94.99708 * 17 16 15 19 19 C 1.38406 * 118.84236 * 180.11141 * 18 17 16 20 20 C 1.39181 * 118.87113 * 359.97193 * 19 18 17 21 21 C 1.37552 * 119.19065 * 359.88211 * 20 19 18 22 22 N 1.31503 * 119.69540 * 274.97701 * 17 16 15 23 23 C 1.50725 * 122.38269 * 180.35816 * 21 20 19 24 24 C 1.52725 * 110.53894 * 342.21373 * 23 21 20 25 25 C 1.53328 * 108.42408 * 51.29189 * 24 23 21 26 26 C 1.50496 * 117.97713 * 179.79295 * 20 19 18 27 27 H 1.08994 * 109.47169 * 269.99976 * 1 2 3 28 28 H 1.09003 * 109.46788 * 30.00508 * 1 2 3 29 29 H 1.08998 * 109.46491 * 149.99761 * 1 2 3 30 30 H 1.08996 * 109.46694 * 34.99991 * 3 2 1 31 31 H 1.09004 * 109.46543 * 154.99526 * 3 2 1 32 32 H 0.96998 * 119.99876 * 179.97438 * 7 6 4 33 33 H 0.96995 * 119.99650 * 244.99594 * 15 12 2 34 34 H 1.08996 * 109.47732 * 45.00083 * 16 15 12 35 35 H 1.09001 * 109.47212 * 284.99629 * 16 15 12 36 36 H 1.08004 * 120.57750 * 0.08670 * 18 17 16 37 37 H 1.08002 * 120.56449 * 179.97438 * 19 18 17 38 38 H 1.09002 * 109.25923 * 221.95122 * 23 21 20 39 39 H 1.08998 * 109.25761 * 102.47520 * 23 21 20 40 40 H 1.08996 * 109.67009 * 171.02172 * 24 23 21 41 41 H 1.08996 * 109.67595 * 291.56019 * 24 23 21 42 42 H 1.08997 * 109.68911 * 49.81945 * 25 24 23 43 43 H 1.09002 * 109.68906 * 170.38604 * 25 24 23 44 44 H 1.09003 * 109.25759 * 42.42459 * 26 20 19 45 45 H 1.08999 * 109.25774 * 282.98960 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2689 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9283 1.1938 -2.2331 6 6 3.0006 2.9504 -1.6664 7 7 3.1258 3.3843 -2.9017 8 14 3.7158 3.9391 -0.2522 9 1 5.1128 3.5033 -0.0002 10 1 3.7029 5.3825 -0.6009 11 1 2.9003 3.7177 0.9689 12 16 2.2931 -1.4340 0.0006 13 8 3.5761 -1.1569 -0.5439 14 8 1.4115 -2.4067 -0.5435 15 7 2.5382 -1.8579 1.5827 16 6 1.3946 -2.1768 2.4410 17 6 1.8801 -2.8728 3.6865 18 6 2.1173 -2.1381 4.8332 19 6 2.5651 -2.7949 5.9662 20 6 2.7603 -4.1718 5.9118 21 6 2.5013 -4.8403 4.7379 22 7 2.0738 -4.1734 3.6725 23 6 2.6803 -6.3306 4.6011 24 6 3.5637 -6.8695 5.7243 25 6 3.0056 -6.3697 7.0620 26 6 3.2521 -4.8648 7.1539 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3632 -0.8900 -0.5139 30 1 1.6501 2.0043 0.5894 31 1 3.1858 1.1178 0.4344 32 1 3.5892 4.2179 -3.0782 33 1 3.4388 -1.8951 1.9408 34 1 0.7080 -2.8308 1.9036 35 1 0.8794 -1.2566 2.7165 36 1 1.9564 -1.0702 4.8446 37 1 2.7596 -2.2482 6.8771 38 1 3.1462 -6.5501 3.6405 39 1 1.7051 -6.8154 4.6467 40 1 3.5549 -7.9593 5.7072 41 1 4.5838 -6.5082 5.5943 42 1 1.9353 -6.5701 7.1113 43 1 3.5126 -6.8757 7.8836 44 1 2.7247 -4.4663 8.0207 45 1 4.3205 -4.6819 7.2686 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000443935400.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:36 Heat of formation + Delta-G solvation = -78.636335 kcal Electronic energy + Delta-G solvation = -27316.885422 eV Core-core repulsion = 23459.318580 eV Total energy + Delta-G solvation = -3857.566842 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.68415 -38.39322 -38.00496 -37.29181 -36.89844 -35.87870 -34.49192 -34.24992 -31.58544 -30.62352 -30.26173 -27.46724 -26.75660 -24.58893 -23.84180 -23.73373 -23.11887 -20.65450 -20.47739 -19.18571 -18.74795 -18.37683 -17.81455 -17.61218 -16.85584 -16.56345 -16.26100 -15.90949 -15.43876 -15.22667 -14.93371 -14.80767 -14.68481 -14.51626 -14.43827 -14.41301 -14.03627 -13.77674 -13.60580 -13.41986 -13.21200 -13.18603 -13.11563 -12.98675 -12.86086 -12.62931 -12.35913 -12.24738 -11.96482 -11.82069 -11.69430 -11.68609 -11.44467 -10.77265 -10.64469 -10.56925 -10.33573 -9.80363 -9.64283 -8.27520 -6.33657 -0.47320 0.11583 0.31770 1.38150 1.42997 1.51179 2.01580 2.37239 2.54733 2.80460 3.05822 3.07082 3.40951 3.61052 3.74540 3.91193 3.96374 4.02835 4.03098 4.09595 4.28379 4.38194 4.45192 4.59952 4.61574 4.69142 4.70707 4.74648 4.77302 4.85823 4.88525 4.90551 5.00068 5.04668 5.09815 5.11999 5.23675 5.29030 5.36116 5.43318 5.44237 5.49391 5.69898 5.77757 6.00213 6.32194 6.69684 7.04899 7.29216 8.90223 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019933 B = 0.002721 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.362491 B =10288.825892 C =10918.923195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.996 5.996 3 C 0.234 3.766 4 C -0.544 4.544 5 H 0.025 0.975 6 C 0.003 3.997 7 N -0.951 5.951 8 Si 0.947 3.053 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.223 1.223 12 S 2.800 3.200 13 O -1.010 7.010 14 O -1.010 7.010 15 N -1.111 6.111 16 C 0.168 3.832 17 C 0.102 3.898 18 C -0.157 4.157 19 C -0.079 4.079 20 C -0.125 4.125 21 C 0.110 3.890 22 N -0.507 5.507 23 C -0.071 4.071 24 C -0.116 4.116 25 C -0.119 4.119 26 C -0.076 4.076 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.035 0.965 32 H 0.267 0.733 33 H 0.419 0.581 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.161 0.839 37 H 0.166 0.834 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.759 -16.032 29.173 33.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.838 5.838 3 C 0.109 3.891 4 C -0.584 4.584 5 H 0.044 0.956 6 C -0.194 4.194 7 N -0.591 5.591 8 Si 0.769 3.231 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.145 1.145 12 S 2.808 3.192 13 O -0.994 6.994 14 O -0.993 6.993 15 N -0.874 5.874 16 C 0.042 3.958 17 C -0.039 4.039 18 C -0.177 4.177 19 C -0.105 4.105 20 C -0.128 4.128 21 C -0.025 4.025 22 N -0.217 5.217 23 C -0.109 4.109 24 C -0.153 4.153 25 C -0.156 4.156 26 C -0.113 4.113 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.254 0.746 34 H 0.100 0.900 35 H 0.129 0.871 36 H 0.179 0.821 37 H 0.184 0.816 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.822 -16.846 27.442 32.324 hybrid contribution 0.810 1.288 0.312 1.554 sum -2.012 -15.557 27.755 31.881 Atomic orbital electron populations 1.21688 0.77629 1.03593 1.03230 1.57283 1.15895 1.21261 1.89318 1.19254 0.92074 0.82395 0.95350 1.21737 1.36291 1.06793 0.93533 0.95626 1.26003 0.95811 0.98717 0.98900 1.70089 1.44156 1.22906 1.21942 0.85736 0.79754 0.77413 0.80230 1.19650 1.20616 1.14536 1.01157 0.72087 0.72624 0.73325 1.93580 1.43042 1.85469 1.77270 1.93507 1.67797 1.60274 1.77715 1.55748 1.15508 1.85434 1.30712 1.20260 0.87306 0.99983 0.88207 1.21019 0.98112 0.89634 0.95146 1.22258 1.00003 1.02573 0.92912 1.22004 0.95324 0.93683 0.99473 1.20853 1.00025 0.94964 0.96909 1.21440 0.95323 0.97272 0.88508 1.67321 1.12744 1.10303 1.31343 1.20431 1.01694 0.88196 1.00566 1.21573 0.98571 1.01499 0.93698 1.21588 1.01727 0.94649 0.97684 1.20520 1.01996 0.95438 0.93386 0.89333 0.91058 0.91290 0.91965 0.94680 0.92402 0.74586 0.89975 0.87127 0.82144 0.81620 0.91081 0.89701 0.89446 0.91757 0.91662 0.89196 0.88775 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.61 10.68 127.77 1.36 3.98 16 2 N -1.00 -38.89 3.23 -543.21 -1.75 -40.64 16 3 C 0.23 10.55 4.15 85.63 0.36 10.90 16 4 C -0.54 -31.76 9.94 25.60 0.25 -31.50 16 5 H 0.03 1.70 8.06 -2.91 -0.02 1.67 16 6 C 0.00 0.18 5.47 84.65 0.46 0.64 16 7 N -0.95 -60.69 13.96 21.45 0.30 -60.39 16 8 Si 0.95 42.40 27.47 68.60 1.88 44.28 16 9 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.22 -8.43 6.54 99.48 0.65 -7.78 16 12 S 2.80 110.94 6.10 -56.49 -0.34 110.59 16 13 O -1.01 -49.60 17.11 -128.00 -2.19 -51.79 16 14 O -1.01 -43.40 16.21 -128.00 -2.08 -45.47 16 15 N -1.11 -32.02 6.05 -190.79 -1.15 -33.18 16 16 C 0.17 3.97 6.56 85.63 0.56 4.53 16 17 C 0.10 2.31 6.18 42.61 0.26 2.57 16 18 C -0.16 -2.62 9.74 22.31 0.22 -2.41 16 19 C -0.08 -1.10 9.75 22.54 0.22 -0.88 16 20 C -0.13 -1.95 5.74 -19.86 -0.11 -2.06 16 21 C 0.11 2.28 6.62 42.26 0.28 2.56 16 22 N -0.51 -13.08 10.10 -172.18 -1.74 -14.82 16 23 C -0.07 -1.17 5.92 29.76 0.18 -1.00 16 24 C -0.12 -1.21 5.97 30.61 0.18 -1.03 16 25 C -0.12 -0.94 5.98 30.63 0.18 -0.75 16 26 C -0.08 -0.67 5.68 29.71 0.17 -0.50 16 27 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 28 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 29 H 0.07 2.16 7.02 -2.39 -0.02 2.14 16 30 H 0.06 2.48 7.17 -2.39 -0.02 2.46 16 31 H 0.04 1.56 7.04 -2.39 -0.02 1.54 16 32 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 33 H 0.42 11.12 8.64 -96.75 -0.84 10.28 16 34 H 0.08 2.12 7.75 -2.39 -0.02 2.10 16 35 H 0.11 1.89 8.04 -2.39 -0.02 1.87 16 36 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.06 0.72 8.10 -2.39 -0.02 0.70 16 42 H 0.06 0.56 8.10 -2.39 -0.02 0.54 16 43 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.09 0.53 8.13 -2.39 -0.02 0.51 16 45 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -84.25 378.74 -2.39 -86.65 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.11 Total: 19.72 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 4.58 Total: -14.95 kcal Atomic # 7 Polarization: -144.68 SS G_CDS: -4.35 Total: -149.03 kcal Atomic # 8 Polarization: -93.00 SS G_CDS: -4.27 Total: -97.26 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.88 Total: 44.28 kcal Atomic # 16 Polarization: 110.94 SS G_CDS: -0.34 Total: 110.59 kcal Total: -84.25 -2.39 -86.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443935400.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.009 kcal (2) G-P(sol) polarization free energy of solvation -84.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds