Wall clock time and date at job start Sat Apr 11 2020 05:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21270 * 120.00262 * 2 1 4 4 N 1.34783 * 119.99808 * 180.02562 * 2 1 3 5 5 C 1.39407 * 119.99700 * 184.71268 * 4 2 1 6 6 C 1.39038 * 119.69414 * 185.27748 * 5 4 2 7 7 C 1.38354 * 119.10189 * 179.97438 * 6 5 4 8 8 C 1.38846 * 118.49483 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.34384 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.46932 * 90.00416 * 9 8 7 11 11 C 1.34775 * 119.99912 * 179.97438 * 10 9 8 12 12 O 1.21554 * 119.99984 * 0.28036 * 11 10 9 13 13 C 1.47880 * 120.00163 * 180.02562 * 11 10 9 14 14 C 1.39920 * 120.02600 * 359.72495 * 13 11 10 15 15 C 1.38327 * 120.36243 * 179.74323 * 14 13 11 16 16 C 1.37754 * 120.40701 * 0.55717 * 15 14 13 17 17 C 1.40743 * 120.04252 * 359.70222 * 16 15 14 18 18 C 1.41439 * 120.17791 * 180.02562 * 17 16 15 19 19 H 1.08008 * 119.99700 * 152.86509 * 18 17 16 20 20 C 1.39935 * 120.00381 * 332.86489 * 18 17 16 21 21 N 1.30822 * 120.00212 * 160.53716 * 20 18 17 22 22 Si 1.86800 * 119.99751 * 340.54370 * 20 18 17 23 23 H 1.48505 * 109.47179 * 92.82154 * 22 20 18 24 24 H 1.48505 * 109.47301 * 212.82191 * 22 20 18 25 25 H 1.48496 * 109.47318 * 332.82385 * 22 20 18 26 26 C 1.39000 * 120.02936 * 180.02562 * 13 11 10 27 27 C 1.38078 * 119.30774 * 0.25631 * 8 7 6 28 28 N 1.31926 * 120.84696 * 359.49216 * 27 8 7 29 29 H 1.09000 * 109.46948 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.46687 * 299.99488 * 1 2 3 31 31 H 1.08998 * 109.46824 * 59.99724 * 1 2 3 32 32 H 0.96998 * 119.99833 * 4.70808 * 4 2 1 33 33 H 1.08004 * 120.44851 * 0.02856 * 6 5 4 34 34 H 1.08002 * 120.75635 * 180.02562 * 7 6 5 35 35 H 1.08996 * 109.47261 * 330.00273 * 9 8 7 36 36 H 1.09003 * 109.46938 * 210.00272 * 9 8 7 37 37 H 0.96997 * 119.99999 * 359.97438 * 10 9 8 38 38 H 1.08003 * 119.81771 * 0.02562 * 14 13 11 39 39 H 1.07998 * 119.79445 * 180.25930 * 15 14 13 40 40 H 1.08003 * 119.97564 * 179.71601 * 16 15 14 41 41 H 0.97004 * 120.00298 * 179.97438 * 21 20 18 42 42 H 1.07999 * 120.19744 * 359.95096 * 26 13 11 43 43 H 1.07997 * 119.57011 * 179.74275 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.5715 -1.1693 0.0987 6 6 4.2682 -2.3674 -0.0130 7 6 5.6480 -2.3552 0.0868 8 6 6.2863 -1.1400 0.2963 9 6 7.7876 -1.0786 0.4120 10 7 8.3717 -0.8746 -0.9160 11 6 9.7091 -0.7873 -1.0577 12 8 10.4310 -0.8829 -0.0843 13 6 10.2988 -0.5807 -2.3980 14 6 9.4690 -0.4816 -3.5202 15 6 10.0128 -0.2831 -4.7766 16 6 11.3777 -0.1921 -4.9391 17 6 12.2286 -0.2948 -3.8227 18 6 13.6304 -0.2012 -3.9862 19 1 14.2463 0.1547 -3.1734 20 6 14.2194 -0.5697 -5.2009 21 7 15.4193 -0.1442 -5.5018 22 14 13.2921 -1.6692 -6.3928 23 1 12.5460 -0.8287 -7.3635 24 1 14.2558 -2.5315 -7.1230 25 1 12.3374 -2.5215 -5.6397 26 6 11.6781 -0.4911 -2.5449 27 6 5.5307 0.0107 0.4034 28 7 4.2162 -0.0311 0.2992 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6983 -2.0058 -0.0698 33 1 3.7394 -3.2949 -0.1763 34 1 6.2159 -3.2701 0.0037 35 1 8.1582 -2.0136 0.8322 36 1 8.0683 -0.2510 1.0635 37 1 7.7959 -0.8023 -1.6932 38 1 8.3978 -0.5560 -3.4043 39 1 9.3636 -0.2038 -5.6359 40 1 11.7951 -0.0417 -5.9238 41 1 15.8277 -0.3999 -6.3436 42 1 12.3226 -0.5711 -1.6820 43 1 6.0225 0.9576 0.5705 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447617097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:42 Heat of formation + Delta-G solvation = -5.595526 kcal Electronic energy + Delta-G solvation = -27001.452081 eV Core-core repulsion = 23011.608575 eV Total energy + Delta-G solvation = -3989.843506 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.17706 -39.67902 -39.13362 -37.33180 -35.73271 -34.49207 -33.71778 -32.66688 -31.57627 -30.66896 -30.07876 -29.54364 -26.26640 -25.09709 -24.36820 -23.12374 -22.06149 -20.96893 -20.67039 -20.04427 -18.61389 -18.07404 -17.49778 -16.51205 -16.16097 -15.93231 -15.85977 -15.73744 -15.02774 -14.89669 -14.65972 -14.53989 -14.23489 -14.05785 -13.67235 -13.55759 -13.30806 -13.11504 -12.78176 -12.74825 -12.66975 -12.64695 -12.07788 -11.95216 -11.60533 -11.11442 -11.05265 -10.80796 -10.58615 -10.55171 -10.15778 -10.00045 -9.71592 -9.48412 -9.40606 -9.16345 -8.87574 -8.57247 -7.87071 -7.78704 -7.03672 -4.56131 0.66736 0.99145 1.91373 2.25062 2.43466 2.51948 3.04139 3.16369 3.23931 3.38726 3.61398 3.80447 3.91113 3.97342 4.36279 4.45961 4.47065 4.57190 4.64520 4.69623 4.77082 4.89741 5.15159 5.29141 5.32884 5.36802 5.54740 5.58468 5.70877 5.83547 5.88269 6.03110 6.03731 6.38556 6.39064 6.61066 6.66919 6.70043 6.72722 6.96607 7.20467 7.41064 7.50575 7.59088 7.73682 7.78520 7.90320 8.00363 8.26428 8.52671 8.66617 8.71149 9.98153 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021795 B = 0.001994 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.408347 B =14037.924138 C =14602.287906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.499 3.501 3 O -0.476 6.476 4 N -0.664 5.664 5 C 0.359 3.641 6 C -0.208 4.208 7 C -0.028 4.028 8 C -0.186 4.186 9 C 0.170 3.830 10 N -0.732 5.732 11 C 0.565 3.435 12 O -0.547 6.547 13 C -0.107 4.107 14 C -0.219 4.219 15 C -0.081 4.081 16 C -0.228 4.228 17 C 0.082 3.918 18 C -0.439 4.439 19 H 0.094 0.906 20 C 0.083 3.917 21 N -0.800 5.800 22 Si 0.915 3.085 23 H -0.269 1.269 24 H -0.290 1.290 25 H -0.245 1.245 26 C -0.137 4.137 27 C 0.153 3.847 28 N -0.478 5.478 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.417 0.583 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.401 0.599 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.287 0.713 42 H 0.115 0.885 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.389 -6.667 7.937 29.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.285 3.715 3 O -0.344 6.344 4 N -0.312 5.312 5 C 0.128 3.872 6 C -0.232 4.232 7 C -0.055 4.055 8 C -0.189 4.189 9 C 0.046 3.954 10 N -0.385 5.385 11 C 0.355 3.645 12 O -0.425 6.425 13 C -0.110 4.110 14 C -0.239 4.239 15 C -0.099 4.099 16 C -0.248 4.248 17 C 0.079 3.921 18 C -0.467 4.467 19 H 0.112 0.888 20 C -0.137 4.137 21 N -0.423 5.423 22 Si 0.741 3.259 23 H -0.195 1.195 24 H -0.218 1.218 25 H -0.168 1.168 26 C -0.157 4.157 27 C -0.005 4.005 28 N -0.192 5.192 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.254 0.746 33 H 0.155 0.845 34 H 0.159 0.841 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.237 0.763 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.098 0.902 42 H 0.133 0.867 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -26.761 -5.099 8.606 28.570 hybrid contribution -0.407 -1.678 -1.182 2.092 sum -27.168 -6.777 7.424 28.968 Atomic orbital electron populations 1.21872 0.90702 1.04447 1.05799 1.21125 0.90714 0.83373 0.76293 1.90863 1.69926 1.30374 1.43262 1.43819 1.04052 1.10827 1.72489 1.18552 0.84714 0.90088 0.93841 1.21455 0.95087 0.97654 1.08966 1.21358 0.93396 0.98155 0.92563 1.20893 0.96890 0.94586 1.06557 1.19964 0.86634 1.02863 0.85901 1.46031 1.07341 1.75890 1.09286 1.18797 0.81116 0.74950 0.89652 1.90705 1.60515 1.50414 1.40907 1.19400 0.94635 1.06148 0.90810 1.20364 0.96689 1.14308 0.92556 1.20498 0.94795 0.98826 0.95791 1.21199 0.93267 1.11844 0.98476 1.17691 0.93715 0.89801 0.90935 1.19545 0.91133 1.36746 0.99308 0.88819 1.26198 0.94902 0.94724 0.97885 1.69697 1.15003 1.34458 1.23138 0.86296 0.79290 0.80507 0.79765 1.19509 1.21781 1.16845 1.21240 0.92366 1.04546 0.97575 1.22685 0.87903 0.98130 0.91821 1.67681 1.10023 1.26539 1.14973 0.90429 0.88300 0.88340 0.74605 0.84512 0.84061 0.90640 0.90489 0.76316 0.88731 0.88363 0.87787 0.90249 0.86658 0.82087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.59 10.39 36.01 0.37 -0.22 16 2 C 0.50 4.28 7.89 -10.98 -0.09 4.19 16 3 O -0.48 -6.67 15.39 5.57 0.09 -6.58 16 4 N -0.66 -4.56 5.39 -11.42 -0.06 -4.63 16 5 C 0.36 3.54 7.41 -154.70 -1.15 2.40 16 6 C -0.21 -1.58 9.94 -39.24 -0.39 -1.97 16 7 C -0.03 -0.24 9.85 -39.31 -0.39 -0.63 16 8 C -0.19 -1.88 5.27 -104.46 -0.55 -2.43 16 9 C 0.17 2.03 5.82 -5.19 -0.03 2.00 16 10 N -0.73 -10.61 5.50 -62.42 -0.34 -10.95 16 11 C 0.56 10.90 7.77 -12.31 -0.10 10.81 16 12 O -0.55 -12.11 16.33 5.32 0.09 -12.02 16 13 C -0.11 -2.28 5.87 -105.04 -0.62 -2.89 16 14 C -0.22 -4.27 9.55 -38.92 -0.37 -4.65 16 15 C -0.08 -1.67 10.01 -39.73 -0.40 -2.06 16 16 C -0.23 -5.36 7.26 -38.81 -0.28 -5.64 16 17 C 0.08 2.06 5.16 -106.87 -0.55 1.51 16 18 C -0.44 -11.80 9.57 -37.73 -0.36 -12.17 16 19 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 20 C 0.08 2.14 5.40 -17.35 -0.09 2.04 16 21 N -0.80 -20.95 13.93 55.55 0.77 -20.18 16 22 Si 0.91 20.34 24.50 -169.99 -4.17 16.18 16 23 H -0.27 -5.75 6.54 56.52 0.37 -5.38 16 24 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.25 -5.58 6.96 56.52 0.39 -5.19 16 26 C -0.14 -3.30 9.34 -38.44 -0.36 -3.66 16 27 C 0.15 1.74 10.85 -17.57 -0.19 1.54 16 28 N -0.48 -6.10 7.92 -12.37 -0.10 -6.20 16 29 H 0.08 0.04 7.92 -51.93 -0.41 -0.37 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.42 1.01 8.54 -40.82 -0.35 0.66 16 33 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 34 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 36 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 37 H 0.40 5.25 6.48 -40.82 -0.26 4.99 16 38 H 0.09 1.51 6.38 -52.48 -0.33 1.18 16 39 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.10 2.42 4.37 -52.48 -0.23 2.19 16 41 H 0.29 6.77 8.30 -40.82 -0.34 6.44 16 42 H 0.12 2.82 7.64 -52.49 -0.40 2.42 16 43 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 369.30 15.07 5.57 5.57 Total: -1.00 -34.64 369.30 -8.66 -43.29 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -4.96 Total: 7.34 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -5.54 Total: -11.82 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.27 Total: -41.95 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.17 Total: -18.61 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.17 Total: 16.18 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.64 -8.66 -43.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447617097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.697 kcal (2) G-P(sol) polarization free energy of solvation -34.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds