Wall clock time and date at job start Sat Apr 11 2020 05:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21270 * 120.00262 * 2 1 4 4 N 1.34783 * 119.99808 * 180.02562 * 2 1 3 5 5 C 1.39407 * 119.99700 * 184.71268 * 4 2 1 6 6 C 1.39038 * 119.69414 * 185.27748 * 5 4 2 7 7 C 1.38354 * 119.10189 * 179.97438 * 6 5 4 8 8 C 1.38846 * 118.49483 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.34384 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.46932 * 90.00416 * 9 8 7 11 11 C 1.34775 * 119.99912 * 179.97438 * 10 9 8 12 12 O 1.21554 * 119.99984 * 0.28036 * 11 10 9 13 13 C 1.47880 * 120.00163 * 180.02562 * 11 10 9 14 14 C 1.39920 * 120.02600 * 359.72495 * 13 11 10 15 15 C 1.38327 * 120.36243 * 179.74323 * 14 13 11 16 16 C 1.37754 * 120.40701 * 0.55717 * 15 14 13 17 17 C 1.40743 * 120.04252 * 359.70222 * 16 15 14 18 18 C 1.41439 * 120.17791 * 180.02562 * 17 16 15 19 19 H 1.08008 * 119.99700 * 152.86509 * 18 17 16 20 20 C 1.39935 * 120.00381 * 332.86489 * 18 17 16 21 21 N 1.30822 * 120.00212 * 160.53716 * 20 18 17 22 22 Si 1.86800 * 119.99751 * 340.54370 * 20 18 17 23 23 H 1.48505 * 109.47179 * 92.82154 * 22 20 18 24 24 H 1.48505 * 109.47301 * 212.82191 * 22 20 18 25 25 H 1.48496 * 109.47318 * 332.82385 * 22 20 18 26 26 C 1.39000 * 120.02936 * 180.02562 * 13 11 10 27 27 C 1.38078 * 119.30774 * 0.25631 * 8 7 6 28 28 N 1.31926 * 120.84696 * 359.49216 * 27 8 7 29 29 H 1.09000 * 109.46948 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.46687 * 299.99488 * 1 2 3 31 31 H 1.08998 * 109.46824 * 59.99724 * 1 2 3 32 32 H 0.96998 * 119.99833 * 4.70808 * 4 2 1 33 33 H 1.08004 * 120.44851 * 0.02856 * 6 5 4 34 34 H 1.08002 * 120.75635 * 180.02562 * 7 6 5 35 35 H 1.08996 * 109.47261 * 330.00273 * 9 8 7 36 36 H 1.09003 * 109.46938 * 210.00272 * 9 8 7 37 37 H 0.96997 * 119.99999 * 359.97438 * 10 9 8 38 38 H 1.08003 * 119.81771 * 0.02562 * 14 13 11 39 39 H 1.07998 * 119.79445 * 180.25930 * 15 14 13 40 40 H 1.08003 * 119.97564 * 179.71601 * 16 15 14 41 41 H 0.97004 * 120.00298 * 179.97438 * 21 20 18 42 42 H 1.07999 * 120.19744 * 359.95096 * 26 13 11 43 43 H 1.07997 * 119.57011 * 179.74275 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.5715 -1.1693 0.0987 6 6 4.2682 -2.3674 -0.0130 7 6 5.6480 -2.3552 0.0868 8 6 6.2863 -1.1400 0.2963 9 6 7.7876 -1.0786 0.4120 10 7 8.3717 -0.8746 -0.9160 11 6 9.7091 -0.7873 -1.0577 12 8 10.4310 -0.8829 -0.0843 13 6 10.2988 -0.5807 -2.3980 14 6 9.4690 -0.4816 -3.5202 15 6 10.0128 -0.2831 -4.7766 16 6 11.3777 -0.1921 -4.9391 17 6 12.2286 -0.2948 -3.8227 18 6 13.6304 -0.2012 -3.9862 19 1 14.2463 0.1547 -3.1734 20 6 14.2194 -0.5697 -5.2009 21 7 15.4193 -0.1442 -5.5018 22 14 13.2921 -1.6692 -6.3928 23 1 12.5460 -0.8287 -7.3635 24 1 14.2558 -2.5315 -7.1230 25 1 12.3374 -2.5215 -5.6397 26 6 11.6781 -0.4911 -2.5449 27 6 5.5307 0.0107 0.4034 28 7 4.2162 -0.0311 0.2992 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6983 -2.0058 -0.0698 33 1 3.7394 -3.2949 -0.1763 34 1 6.2159 -3.2701 0.0037 35 1 8.1582 -2.0136 0.8322 36 1 8.0683 -0.2510 1.0635 37 1 7.7959 -0.8023 -1.6932 38 1 8.3978 -0.5560 -3.4043 39 1 9.3636 -0.2038 -5.6359 40 1 11.7951 -0.0417 -5.9238 41 1 15.8277 -0.3999 -6.3436 42 1 12.3226 -0.5711 -1.6820 43 1 6.0225 0.9576 0.5705 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447617097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:41 Heat of formation + Delta-G solvation = -30.276778 kcal Electronic energy + Delta-G solvation = -27002.522340 eV Core-core repulsion = 23011.608575 eV Total energy + Delta-G solvation = -3990.913766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.88632 -40.99860 -40.08108 -39.04056 -36.67553 -35.65947 -35.44258 -33.53872 -32.70431 -32.00652 -31.66236 -30.26434 -27.48694 -26.73623 -25.06812 -24.54236 -23.03760 -22.42374 -21.62673 -21.59643 -19.72794 -19.23530 -18.19435 -18.14307 -17.39158 -17.29143 -16.83439 -16.53483 -16.45780 -16.04755 -15.87005 -15.57265 -15.46041 -15.16362 -14.81399 -14.67129 -14.56216 -14.39444 -13.98516 -13.95470 -13.72954 -13.35039 -13.30726 -13.07803 -12.86829 -12.80324 -12.68543 -12.31612 -11.86860 -11.74125 -11.55071 -11.30227 -11.20815 -10.92773 -10.77356 -10.25051 -10.08909 -9.64751 -9.57103 -9.30279 -8.93809 -6.55548 -0.07044 0.18049 0.31122 0.74109 1.25157 1.41714 1.48220 1.61540 1.92825 1.94975 2.12166 2.26004 2.64391 2.91786 3.35409 3.46349 3.62925 3.86856 3.90651 3.94939 3.99993 4.12420 4.25387 4.40969 4.46792 4.54307 4.56399 4.66396 4.71860 4.77416 4.88548 4.89915 4.91536 5.10175 5.14686 5.19176 5.30095 5.36512 5.42085 5.64911 5.71561 5.74467 5.83846 6.09599 6.22823 6.28938 6.54702 6.65587 6.73055 6.93448 7.21502 7.32910 8.14828 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021795 B = 0.001994 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.408347 B =14037.924138 C =14602.287906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.492 3.508 3 O -0.540 6.540 4 N -0.650 5.650 5 C 0.342 3.658 6 C -0.191 4.191 7 C -0.027 4.027 8 C -0.184 4.184 9 C 0.173 3.827 10 N -0.707 5.707 11 C 0.564 3.436 12 O -0.583 6.583 13 C -0.111 4.111 14 C -0.187 4.187 15 C -0.081 4.081 16 C -0.233 4.233 17 C 0.066 3.934 18 C -0.486 4.486 19 H 0.050 0.950 20 C 0.045 3.955 21 N -0.844 5.844 22 Si 0.971 3.029 23 H -0.247 1.247 24 H -0.277 1.277 25 H -0.252 1.252 26 C -0.168 4.168 27 C 0.138 3.862 28 N -0.519 5.519 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.439 0.561 33 H 0.178 0.822 34 H 0.165 0.835 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.412 0.588 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.107 0.893 41 H 0.296 0.704 42 H 0.091 0.909 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.684 -9.241 6.575 34.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.281 3.719 3 O -0.414 6.414 4 N -0.299 5.299 5 C 0.110 3.890 6 C -0.213 4.213 7 C -0.053 4.053 8 C -0.188 4.188 9 C 0.050 3.950 10 N -0.360 5.360 11 C 0.353 3.647 12 O -0.464 6.464 13 C -0.114 4.114 14 C -0.207 4.207 15 C -0.099 4.099 16 C -0.252 4.252 17 C 0.063 3.937 18 C -0.515 4.515 19 H 0.069 0.931 20 C -0.170 4.170 21 N -0.469 5.469 22 Si 0.794 3.206 23 H -0.172 1.172 24 H -0.203 1.203 25 H -0.176 1.176 26 C -0.188 4.188 27 C -0.020 4.020 28 N -0.234 5.234 29 H 0.133 0.867 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.280 0.720 33 H 0.196 0.804 34 H 0.182 0.818 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.249 0.751 38 H 0.161 0.839 39 H 0.162 0.838 40 H 0.125 0.875 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -32.127 -7.711 7.242 33.824 hybrid contribution 0.931 -0.879 -0.590 1.410 sum -31.196 -8.590 6.652 33.033 Atomic orbital electron populations 1.21903 0.86644 1.07089 1.06144 1.22096 0.92626 0.82735 0.74455 1.90837 1.71550 1.32655 1.46348 1.43825 1.03153 1.11682 1.71273 1.19006 0.85975 0.90249 0.93733 1.21824 0.94724 0.98232 1.06532 1.21667 0.94064 0.98081 0.91498 1.20633 0.95301 0.95180 1.07731 1.20041 0.87854 1.02957 0.84196 1.45855 1.05549 1.73613 1.10983 1.18539 0.82523 0.75220 0.88373 1.90697 1.61797 1.52267 1.41651 1.19693 0.93766 1.05013 0.92926 1.20940 0.98866 1.09583 0.91262 1.21009 0.93957 0.97122 0.97797 1.21401 0.94642 1.11370 0.97795 1.17781 0.93269 0.90415 0.92215 1.19485 0.92137 1.40527 0.99359 0.93133 1.26940 0.95701 0.95376 0.99020 1.69727 1.16534 1.36267 1.24415 0.85446 0.78380 0.78873 0.77939 1.17237 1.20326 1.17598 1.21175 0.93925 1.07014 0.96696 1.22656 0.87972 0.98562 0.92834 1.67629 1.10625 1.28697 1.16422 0.86656 0.87919 0.87842 0.71963 0.80420 0.81767 0.89994 0.91052 0.75068 0.83869 0.83786 0.87512 0.89332 0.89100 0.82706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 10.39 71.24 0.74 0.10 16 2 C 0.49 7.59 7.89 87.66 0.69 8.29 16 3 O -0.54 -15.20 15.39 -3.00 -0.05 -15.25 16 4 N -0.65 -7.01 5.39 -308.44 -1.66 -8.67 16 5 C 0.34 5.86 7.41 132.92 0.98 6.84 16 6 C -0.19 -2.05 9.94 22.49 0.22 -1.82 16 7 C -0.03 -0.35 9.85 22.44 0.22 -0.13 16 8 C -0.18 -3.32 5.27 -19.76 -0.10 -3.42 16 9 C 0.17 3.78 5.82 85.63 0.50 4.28 16 10 N -0.71 -18.67 5.50 -469.67 -2.58 -21.25 16 11 C 0.56 21.19 7.77 86.80 0.67 21.87 16 12 O -0.58 -26.16 16.33 -3.89 -0.06 -26.23 16 13 C -0.11 -4.60 5.87 -20.13 -0.12 -4.72 16 14 C -0.19 -6.49 9.55 22.70 0.22 -6.27 16 15 C -0.08 -2.99 10.01 22.18 0.22 -2.76 16 16 C -0.23 -10.56 7.26 22.77 0.17 -10.40 16 17 C 0.07 3.43 5.16 -21.32 -0.11 3.32 16 18 C -0.49 -28.09 9.57 23.47 0.22 -27.86 16 19 H 0.05 3.20 8.06 -2.91 -0.02 3.17 16 20 C 0.04 2.41 5.40 85.25 0.46 2.87 16 21 N -0.84 -46.52 13.93 21.82 0.30 -46.22 16 22 Si 0.97 41.75 24.50 68.60 1.68 43.43 16 23 H -0.25 -9.71 6.54 99.48 0.65 -9.06 16 24 H -0.28 -11.15 7.11 99.48 0.71 -10.45 16 25 H -0.25 -11.01 6.96 99.48 0.69 -10.31 16 26 C -0.17 -8.40 9.34 23.01 0.21 -8.18 16 27 C 0.14 3.01 10.85 84.64 0.92 3.93 16 28 N -0.52 -12.81 7.92 -193.04 -1.53 -14.33 16 29 H 0.11 -0.42 7.92 -2.39 -0.02 -0.44 16 30 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.44 0.22 8.54 -92.71 -0.79 -0.57 16 33 H 0.18 0.40 8.06 -2.91 -0.02 0.38 16 34 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 35 H 0.08 1.75 8.09 -2.39 -0.02 1.73 16 36 H 0.07 1.69 8.09 -2.39 -0.02 1.67 16 37 H 0.41 9.05 6.48 -92.71 -0.60 8.45 16 38 H 0.14 3.62 6.38 -2.91 -0.02 3.60 16 39 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 40 H 0.11 4.76 4.37 -2.91 -0.01 4.75 16 41 H 0.30 14.51 8.30 -92.71 -0.77 13.74 16 42 H 0.09 4.86 7.64 -2.91 -0.02 4.84 16 43 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -83.48 369.30 1.85 -81.63 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -0.38 Total: 20.96 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: 6.12 Total: -14.07 kcal Atomic # 7 Polarization: -85.01 SS G_CDS: -5.47 Total: -90.48 kcal Atomic # 8 Polarization: -41.36 SS G_CDS: -0.11 Total: -41.47 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.68 Total: 43.43 kcal Total: -83.48 1.85 -81.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447617097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.355 kcal (2) G-P(sol) polarization free energy of solvation -83.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds