Wall clock time and date at job start Sat Apr 11 2020 05:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46841 * 155.22886 * 3 2 1 5 5 C 1.36911 * 120.00243 * 262.74648 * 4 3 2 6 6 H 1.08001 * 120.00133 * 29.38087 * 5 4 3 7 7 C 1.39017 * 120.00056 * 209.38399 * 5 4 3 8 8 N 1.31384 * 120.00064 * 18.04218 * 7 5 4 9 9 Si 1.86798 * 120.00021 * 198.04699 * 7 5 4 10 10 H 1.48506 * 109.46988 * 64.99680 * 9 7 5 11 11 H 1.48498 * 109.47541 * 184.99343 * 9 7 5 12 12 H 1.48506 * 109.47047 * 304.99855 * 9 7 5 13 13 C 1.34775 * 120.00149 * 82.74471 * 4 3 2 14 14 O 1.21629 * 120.00505 * 183.92280 * 13 4 3 15 15 C 1.47376 * 119.99665 * 3.93034 * 13 4 3 16 16 N 1.32047 * 126.45212 * 4.07326 * 15 13 4 17 17 N 1.28459 * 110.20804 * 179.97438 * 16 15 13 18 18 C 1.40072 * 124.92821 * 180.02562 * 17 16 15 19 19 C 1.38872 * 120.06772 * 354.78074 * 18 17 16 20 20 C 1.38116 * 119.93163 * 179.97438 * 19 18 17 21 21 C 1.38285 * 120.06645 * 359.97438 * 20 19 18 22 22 C 1.38291 * 120.14207 * 0.02562 * 21 20 19 23 23 C 1.38112 * 120.06845 * 359.97438 * 22 21 20 24 24 C 1.36133 * 110.14297 * 0.26018 * 17 16 15 25 25 C 1.35747 * 107.07117 * 359.57959 * 24 17 16 26 26 O 1.36072 * 127.25784 * 180.12556 * 25 24 17 27 27 C 1.42901 * 117.00359 * 0.33885 * 26 25 24 28 28 C 1.52993 * 109.47268 * 180.02562 * 27 26 25 29 29 H 4.40642 * 5.51474 * 180.02562 * 4 1 2 30 30 H 1.08999 * 109.47105 * 35.23336 * 3 2 1 31 31 H 1.08993 * 109.47451 * 275.23029 * 3 2 1 32 32 H 0.97003 * 120.00316 * 184.96651 * 8 7 5 33 33 H 1.08002 * 120.03790 * 0.02562 * 19 18 17 34 34 H 1.07993 * 119.96685 * 179.72248 * 20 19 18 35 35 H 1.07997 * 119.93207 * 180.02562 * 21 20 19 36 36 H 1.07999 * 119.96716 * 179.97438 * 22 21 20 37 37 H 1.08005 * 120.03634 * 180.02562 * 23 22 21 38 38 H 1.08002 * 126.46717 * 179.73664 * 24 17 16 39 39 H 1.09005 * 109.46821 * 299.99464 * 27 26 25 40 40 H 1.08992 * 109.47489 * 59.99484 * 27 26 25 41 41 H 1.09002 * 109.47259 * 179.97438 * 28 27 26 42 42 H 1.09004 * 109.47452 * 299.99554 * 28 27 26 43 43 H 1.09005 * 109.47205 * 59.99576 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2550 -0.5787 5 6 3.5030 1.3032 -1.8962 6 1 3.0331 0.6462 -2.6131 7 6 4.4829 2.1977 -2.3112 8 7 5.2970 2.7351 -1.4311 9 14 4.6421 2.6356 -4.1201 10 1 3.4213 3.3549 -4.5646 11 1 5.8287 3.5066 -4.3161 12 1 4.8027 1.3933 -4.9179 13 6 3.2189 2.3617 0.1858 14 8 3.5555 3.4197 -0.3110 15 6 2.9042 2.2899 1.6237 16 7 2.6010 1.2014 2.3071 17 7 2.3841 1.4965 3.5384 18 6 2.0396 0.5749 4.5353 19 6 1.8035 -0.7529 4.2038 20 6 1.4645 -1.6594 5.1891 21 6 1.3606 -1.2462 6.5047 22 6 1.5951 0.0753 6.8381 23 6 1.9345 0.9867 5.8574 24 6 2.5326 2.8357 3.7326 25 6 2.8705 3.3771 2.5346 26 8 3.1187 4.6872 2.2632 27 6 3.0226 5.6053 3.3541 28 6 3.3324 7.0195 2.8593 29 1 -1.0502 -0.0002 0.0003 30 1 3.0097 -0.8386 -0.5929 31 1 3.0094 -0.0929 1.0233 32 1 5.9329 3.4128 -1.7091 33 1 1.8857 -1.0765 3.1767 34 1 1.2764 -2.6911 4.9314 35 1 1.0958 -1.9569 7.2735 36 1 1.5128 0.3951 7.8664 37 1 2.1179 2.0185 6.1183 38 1 2.4077 3.3669 4.6647 39 1 2.0132 5.5774 3.7646 40 1 3.7374 5.3260 4.1280 41 1 3.2586 7.7198 3.6913 42 1 4.3416 7.0479 2.4485 43 1 2.6171 7.2985 2.0855 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490962044.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:56 Heat of formation + Delta-G solvation = 143.054560 kcal Electronic energy + Delta-G solvation = -29365.044745 eV Core-core repulsion = 25381.647190 eV Total energy + Delta-G solvation = -3983.397555 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.41576 -39.20303 -38.03203 -37.92803 -34.43620 -33.34223 -32.33526 -31.55561 -31.21800 -31.06968 -29.50655 -28.73523 -26.30415 -25.08680 -23.81668 -23.07936 -22.66421 -21.30562 -20.31609 -19.53811 -18.40965 -17.56738 -16.77644 -16.67069 -16.16961 -16.10577 -15.70686 -15.19263 -14.85576 -14.57536 -14.37008 -14.21003 -13.81969 -13.77626 -13.59545 -13.00226 -12.75238 -12.58766 -12.41025 -12.35543 -12.14002 -12.04764 -11.77959 -11.32364 -11.25343 -11.01730 -10.85355 -10.69990 -10.51947 -10.33108 -10.21768 -9.77420 -9.58339 -9.19943 -9.18490 -9.02209 -8.50697 -8.09076 -7.54656 -6.99531 -5.92845 -3.74270 0.80665 1.16885 2.39791 2.64451 2.82635 3.37464 3.42969 3.45267 3.52580 3.60735 3.63645 3.68398 4.42068 4.53839 4.67981 4.81615 4.90450 4.94911 4.99793 5.08950 5.14139 5.18385 5.20685 5.27115 5.36039 5.47209 5.49383 5.53991 5.64967 5.68426 5.84148 5.96637 6.11241 6.18285 6.23416 6.28323 6.30292 6.34579 6.49849 6.56607 6.67751 6.74321 7.30186 7.59572 7.82519 8.22250 8.34867 8.41472 9.03930 9.25155 9.67835 10.42479 11.01709 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010752 B = 0.004368 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.428640 B = 6408.263519 C = 8415.068500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.151 4.151 3 C 0.192 3.808 4 N -0.431 5.431 5 C -0.323 4.323 6 H 0.087 0.913 7 C 0.041 3.959 8 N -0.785 5.785 9 Si 0.915 3.085 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.508 3.492 14 O -0.486 6.486 15 C 0.048 3.952 16 N -0.260 5.260 17 N -0.247 5.247 18 C 0.164 3.836 19 C -0.117 4.117 20 C -0.095 4.095 21 C -0.136 4.136 22 C -0.096 4.096 23 C -0.141 4.141 24 C -0.118 4.118 25 C 0.068 3.932 26 O -0.265 6.265 27 C 0.054 3.946 28 C -0.150 4.150 29 H 0.206 0.794 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.265 0.735 33 H 0.141 0.859 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.174 0.826 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.820 -3.317 17.473 19.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.152 4.152 3 C 0.068 3.932 4 N -0.152 5.152 5 C -0.450 4.450 6 H 0.105 0.895 7 C -0.170 4.170 8 N -0.422 5.422 9 Si 0.742 3.258 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.294 3.706 14 O -0.358 6.358 15 C -0.115 4.115 16 N -0.093 5.093 17 N -0.031 5.031 18 C 0.072 3.928 19 C -0.137 4.137 20 C -0.114 4.114 21 C -0.155 4.155 22 C -0.115 4.115 23 C -0.161 4.161 24 C -0.256 4.256 25 C 0.013 3.987 26 O -0.176 6.176 27 C -0.022 4.022 28 C -0.207 4.207 29 H 0.223 0.777 30 H 0.107 0.893 31 H 0.131 0.869 32 H 0.076 0.924 33 H 0.159 0.841 34 H 0.149 0.851 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.191 0.809 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.495 -3.642 16.963 18.526 hybrid contribution -0.146 1.186 -0.277 1.227 sum -6.641 -2.455 16.687 18.127 Atomic orbital electron populations 1.24578 0.95617 1.02290 1.04333 1.24109 0.95208 0.98538 0.97358 1.18965 0.83093 0.89851 1.01266 1.43129 1.56706 1.05268 1.10057 1.19248 1.18431 1.24782 0.82579 0.89492 1.25030 0.94653 0.98736 0.98595 1.70068 1.15094 1.22438 1.34594 0.86204 0.77610 0.78262 0.83732 1.20361 1.21199 1.20288 1.16185 0.87646 0.85093 0.81691 1.90674 1.45743 1.28048 1.71331 1.22805 1.05038 0.86534 0.97075 1.73847 1.20150 1.25305 0.90004 1.42135 1.50340 1.04670 1.05979 1.17639 1.00003 0.88888 0.86314 1.21020 1.00398 0.90892 1.01429 1.21067 0.98317 0.99560 0.92432 1.21192 1.01610 0.96100 0.96569 1.20924 0.98706 0.93044 0.98816 1.20813 1.03963 1.00838 0.90521 1.22274 1.17884 0.85281 1.00115 1.18805 1.02458 0.85598 0.91828 1.86366 1.85399 1.11839 1.33950 1.22711 1.00192 0.89992 0.89337 1.21718 1.03661 0.93288 1.01999 0.77734 0.89274 0.86911 0.92431 0.84073 0.85105 0.85669 0.85287 0.85356 0.80901 0.92946 0.92832 0.90951 0.91281 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.64 19.25 29.55 0.57 -4.07 16 2 C -0.15 -3.14 12.89 -37.12 -0.48 -3.62 16 3 C 0.19 4.23 5.51 -6.83 -0.04 4.19 16 4 N -0.43 -11.62 2.58 -119.18 -0.31 -11.92 16 5 C -0.32 -9.13 9.43 -14.99 -0.14 -9.27 16 6 H 0.09 2.32 7.90 -52.49 -0.41 1.91 16 7 C 0.04 1.19 4.49 -17.45 -0.08 1.11 16 8 N -0.79 -23.88 10.35 55.50 0.57 -23.31 16 9 Si 0.91 22.20 29.59 -169.99 -5.03 17.17 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.51 14.37 6.87 -12.54 -0.09 14.28 16 14 O -0.49 -15.41 13.00 3.19 0.04 -15.36 16 15 C 0.05 1.17 6.78 -82.67 -0.56 0.61 16 16 N -0.26 -5.41 7.12 33.46 0.24 -5.17 16 17 N -0.25 -4.37 3.52 -10.40 -0.04 -4.40 16 18 C 0.16 2.35 6.65 -83.62 -0.56 1.80 16 19 C -0.12 -1.55 9.60 -39.39 -0.38 -1.93 16 20 C -0.10 -0.96 10.04 -39.61 -0.40 -1.36 16 21 C -0.14 -1.18 10.04 -39.54 -0.40 -1.58 16 22 C -0.10 -0.86 10.04 -39.61 -0.40 -1.26 16 23 C -0.14 -1.57 9.43 -39.39 -0.37 -1.94 16 24 C -0.12 -2.00 9.90 -16.53 -0.16 -2.16 16 25 C 0.07 1.44 7.05 -39.08 -0.28 1.17 16 26 O -0.27 -5.58 9.76 -22.03 -0.22 -5.79 16 27 C 0.05 0.77 5.87 37.15 0.22 0.99 16 28 C -0.15 -1.87 10.28 37.15 0.38 -1.49 16 29 H 0.21 2.97 7.80 -54.08 -0.42 2.54 16 30 H 0.09 1.80 7.98 -51.93 -0.41 1.39 16 31 H 0.11 2.40 5.15 -51.93 -0.27 2.13 16 32 H 0.27 7.76 8.32 -40.82 -0.34 7.42 16 33 H 0.14 2.00 7.65 -52.49 -0.40 1.60 16 34 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 35 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 36 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.13 1.21 6.68 -52.48 -0.35 0.86 16 38 H 0.17 2.15 6.67 -52.49 -0.35 1.80 16 39 H 0.05 0.65 8.11 -51.93 -0.42 0.22 16 40 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 374.33 15.07 5.64 5.64 Total: -1.00 -36.58 374.33 -7.38 -43.96 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -5.13 Total: 3.72 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -3.15 Total: -4.53 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.47 Total: -44.81 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.17 Total: -21.16 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.58 -7.38 -43.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490962044.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.017 kcal (2) G-P(sol) polarization free energy of solvation -36.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds