Wall clock time and date at job start Sat Apr 11 2020 05:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46841 * 155.22886 * 3 2 1 5 5 C 1.36911 * 120.00243 * 262.74648 * 4 3 2 6 6 H 1.08001 * 120.00133 * 29.38087 * 5 4 3 7 7 C 1.39017 * 120.00056 * 209.38399 * 5 4 3 8 8 N 1.31384 * 120.00064 * 18.04218 * 7 5 4 9 9 Si 1.86798 * 120.00021 * 198.04699 * 7 5 4 10 10 H 1.48506 * 109.46988 * 64.99680 * 9 7 5 11 11 H 1.48498 * 109.47541 * 184.99343 * 9 7 5 12 12 H 1.48506 * 109.47047 * 304.99855 * 9 7 5 13 13 C 1.34775 * 120.00149 * 82.74471 * 4 3 2 14 14 O 1.21629 * 120.00505 * 183.92280 * 13 4 3 15 15 C 1.47376 * 119.99665 * 3.93034 * 13 4 3 16 16 N 1.32047 * 126.45212 * 4.07326 * 15 13 4 17 17 N 1.28459 * 110.20804 * 179.97438 * 16 15 13 18 18 C 1.40072 * 124.92821 * 180.02562 * 17 16 15 19 19 C 1.38872 * 120.06772 * 354.78074 * 18 17 16 20 20 C 1.38116 * 119.93163 * 179.97438 * 19 18 17 21 21 C 1.38285 * 120.06645 * 359.97438 * 20 19 18 22 22 C 1.38291 * 120.14207 * 0.02562 * 21 20 19 23 23 C 1.38112 * 120.06845 * 359.97438 * 22 21 20 24 24 C 1.36133 * 110.14297 * 0.26018 * 17 16 15 25 25 C 1.35747 * 107.07117 * 359.57959 * 24 17 16 26 26 O 1.36072 * 127.25784 * 180.12556 * 25 24 17 27 27 C 1.42901 * 117.00359 * 0.33885 * 26 25 24 28 28 C 1.52993 * 109.47268 * 180.02562 * 27 26 25 29 29 H 4.40642 * 5.51474 * 180.02562 * 4 1 2 30 30 H 1.08999 * 109.47105 * 35.23336 * 3 2 1 31 31 H 1.08993 * 109.47451 * 275.23029 * 3 2 1 32 32 H 0.97003 * 120.00316 * 184.96651 * 8 7 5 33 33 H 1.08002 * 120.03790 * 0.02562 * 19 18 17 34 34 H 1.07993 * 119.96685 * 179.72248 * 20 19 18 35 35 H 1.07997 * 119.93207 * 180.02562 * 21 20 19 36 36 H 1.07999 * 119.96716 * 179.97438 * 22 21 20 37 37 H 1.08005 * 120.03634 * 180.02562 * 23 22 21 38 38 H 1.08002 * 126.46717 * 179.73664 * 24 17 16 39 39 H 1.09005 * 109.46821 * 299.99464 * 27 26 25 40 40 H 1.08992 * 109.47489 * 59.99484 * 27 26 25 41 41 H 1.09002 * 109.47259 * 179.97438 * 28 27 26 42 42 H 1.09004 * 109.47452 * 299.99554 * 28 27 26 43 43 H 1.09005 * 109.47205 * 59.99576 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2550 -0.5787 5 6 3.5030 1.3032 -1.8962 6 1 3.0331 0.6462 -2.6131 7 6 4.4829 2.1977 -2.3112 8 7 5.2970 2.7351 -1.4311 9 14 4.6421 2.6356 -4.1201 10 1 3.4213 3.3549 -4.5646 11 1 5.8287 3.5066 -4.3161 12 1 4.8027 1.3933 -4.9179 13 6 3.2189 2.3617 0.1858 14 8 3.5555 3.4197 -0.3110 15 6 2.9042 2.2899 1.6237 16 7 2.6010 1.2014 2.3071 17 7 2.3841 1.4965 3.5384 18 6 2.0396 0.5749 4.5353 19 6 1.8035 -0.7529 4.2038 20 6 1.4645 -1.6594 5.1891 21 6 1.3606 -1.2462 6.5047 22 6 1.5951 0.0753 6.8381 23 6 1.9345 0.9867 5.8574 24 6 2.5326 2.8357 3.7326 25 6 2.8705 3.3771 2.5346 26 8 3.1187 4.6872 2.2632 27 6 3.0226 5.6053 3.3541 28 6 3.3324 7.0195 2.8593 29 1 -1.0502 -0.0002 0.0003 30 1 3.0097 -0.8386 -0.5929 31 1 3.0094 -0.0929 1.0233 32 1 5.9329 3.4128 -1.7091 33 1 1.8857 -1.0765 3.1767 34 1 1.2764 -2.6911 4.9314 35 1 1.0958 -1.9569 7.2735 36 1 1.5128 0.3951 7.8664 37 1 2.1179 2.0185 6.1183 38 1 2.4077 3.3669 4.6647 39 1 2.0132 5.5774 3.7646 40 1 3.7374 5.3260 4.1280 41 1 3.2586 7.7198 3.6913 42 1 4.3416 7.0479 2.4485 43 1 2.6171 7.2985 2.0855 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490962044.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:55 Heat of formation + Delta-G solvation = 120.101253 kcal Electronic energy + Delta-G solvation = -29366.040075 eV Core-core repulsion = 25381.647190 eV Total energy + Delta-G solvation = -3984.392885 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.85885 -40.30722 -39.80421 -39.29614 -36.39965 -34.77351 -34.08128 -32.95519 -32.60971 -32.12116 -30.83990 -29.98983 -28.15643 -26.90026 -25.11238 -24.38343 -23.68405 -22.63662 -21.53763 -21.26198 -19.74230 -19.19327 -18.47836 -17.93752 -17.69979 -17.43783 -17.03496 -16.60365 -16.41882 -15.91633 -15.77127 -15.59106 -15.33970 -15.21157 -14.59016 -14.41660 -14.22278 -14.15371 -13.85151 -13.62514 -13.46109 -13.40567 -13.28967 -12.81750 -12.62029 -12.55699 -12.22798 -12.15878 -12.11381 -11.81744 -11.79146 -11.47321 -11.03577 -10.91109 -10.74132 -10.21796 -9.99430 -9.78817 -9.13307 -8.89594 -8.07237 -5.93563 -0.23345 0.36406 1.05008 1.28690 1.38449 1.41496 1.50389 1.53495 1.84481 2.03793 2.33949 2.45576 2.80668 2.96829 3.20539 3.28195 3.45886 3.70660 3.76202 3.89518 3.96604 4.06649 4.10030 4.21221 4.26436 4.34578 4.44641 4.46227 4.56323 4.61336 4.68573 4.71189 4.87600 4.92858 5.04756 5.09308 5.16554 5.22522 5.30753 5.39732 5.41883 5.53214 5.77379 6.05969 6.14106 6.51109 6.77969 6.87039 6.95218 7.21132 7.60560 8.36649 8.88323 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010752 B = 0.004368 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.428640 B = 6408.263519 C = 8415.068500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.201 4.201 3 C 0.197 3.803 4 N -0.447 5.447 5 C -0.351 4.351 6 H 0.094 0.906 7 C -0.008 4.008 8 N -0.828 5.828 9 Si 0.981 3.019 10 H -0.284 1.284 11 H -0.286 1.286 12 H -0.252 1.252 13 C 0.502 3.498 14 O -0.539 6.539 15 C -0.013 4.013 16 N -0.255 5.255 17 N -0.231 5.231 18 C 0.112 3.888 19 C -0.134 4.134 20 C -0.099 4.099 21 C -0.117 4.117 22 C -0.091 4.091 23 C -0.133 4.133 24 C -0.088 4.088 25 C 0.039 3.961 26 O -0.309 6.309 27 C 0.043 3.957 28 C -0.147 4.147 29 H 0.247 0.753 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.258 0.742 33 H 0.118 0.882 34 H 0.153 0.847 35 H 0.163 0.837 36 H 0.169 0.831 37 H 0.149 0.851 38 H 0.225 0.775 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.114 0.886 42 H 0.049 0.951 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.085 -4.521 21.701 23.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.202 4.202 3 C 0.074 3.926 4 N -0.167 5.167 5 C -0.478 4.478 6 H 0.111 0.889 7 C -0.215 4.215 8 N -0.466 5.466 9 Si 0.805 3.195 10 H -0.210 1.210 11 H -0.211 1.211 12 H -0.176 1.176 13 C 0.290 3.710 14 O -0.415 6.415 15 C -0.173 4.173 16 N -0.090 5.090 17 N -0.016 5.016 18 C 0.022 3.978 19 C -0.154 4.154 20 C -0.117 4.117 21 C -0.135 4.135 22 C -0.109 4.109 23 C -0.153 4.153 24 C -0.227 4.227 25 C -0.015 4.015 26 O -0.221 6.221 27 C -0.032 4.032 28 C -0.204 4.204 29 H 0.264 0.736 30 H 0.114 0.886 31 H 0.132 0.868 32 H 0.067 0.933 33 H 0.136 0.864 34 H 0.171 0.829 35 H 0.180 0.820 36 H 0.186 0.814 37 H 0.167 0.833 38 H 0.241 0.759 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.133 0.867 42 H 0.068 0.932 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.774 -4.923 21.196 23.462 hybrid contribution 0.357 1.359 -1.168 1.827 sum -8.417 -3.563 20.028 22.015 Atomic orbital electron populations 1.25495 0.96436 0.99584 1.01765 1.24026 0.95450 1.00980 0.99740 1.18922 0.84435 0.88095 1.01194 1.43343 1.56862 1.06635 1.09889 1.19596 1.18744 1.25594 0.83887 0.88857 1.25990 0.94151 0.98487 1.02879 1.70216 1.16255 1.23344 1.36742 0.85194 0.76957 0.78671 0.78670 1.21000 1.21133 1.17632 1.16804 0.85986 0.84639 0.83609 1.90599 1.47848 1.29860 1.73146 1.22244 1.09803 0.89211 0.96033 1.73699 1.19550 1.24353 0.91409 1.42586 1.47632 1.05835 1.05546 1.18134 1.03903 0.88891 0.86841 1.21080 1.01464 0.91442 1.01406 1.21373 0.97671 1.00079 0.92590 1.21719 0.98422 0.96870 0.96490 1.21433 0.96826 0.92614 1.00052 1.21177 1.02471 1.02487 0.89152 1.22835 1.14893 0.84725 1.00284 1.18943 1.04335 0.85640 0.92628 1.86306 1.85932 1.12429 1.37480 1.23130 1.02267 0.89275 0.88500 1.21781 1.01989 0.93489 1.03156 0.73635 0.88647 0.86754 0.93264 0.86385 0.82936 0.81957 0.81395 0.83303 0.75861 0.90469 0.90762 0.86712 0.93182 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.81 19.25 74.32 1.43 -6.38 16 2 C -0.20 -8.61 12.89 31.12 0.40 -8.21 16 3 C 0.20 9.22 5.51 84.57 0.47 9.68 16 4 N -0.45 -25.81 2.58 -649.22 -1.68 -27.49 16 5 C -0.35 -21.05 9.43 84.09 0.79 -20.25 16 6 H 0.09 5.25 7.90 -2.91 -0.02 5.23 16 7 C -0.01 -0.46 4.49 84.95 0.38 -0.08 16 8 N -0.83 -54.09 10.35 21.68 0.22 -53.86 16 9 Si 0.98 47.92 29.59 68.60 2.03 49.95 16 10 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 11 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 12 H -0.25 -11.16 7.11 99.48 0.71 -10.45 16 13 C 0.50 30.63 6.87 86.65 0.59 31.23 16 14 O -0.54 -37.02 13.00 -2.15 -0.03 -37.05 16 15 C -0.01 -0.67 6.78 42.42 0.29 -0.39 16 16 N -0.25 -11.00 7.12 -48.06 -0.34 -11.34 16 17 N -0.23 -8.06 3.52 -186.82 -0.66 -8.71 16 18 C 0.11 3.00 6.65 38.13 0.25 3.26 16 19 C -0.13 -3.38 9.60 22.39 0.21 -3.16 16 20 C -0.10 -1.66 10.04 22.25 0.22 -1.43 16 21 C -0.12 -1.38 10.04 22.29 0.22 -1.16 16 22 C -0.09 -1.09 10.04 22.25 0.22 -0.87 16 23 C -0.13 -2.39 9.43 22.39 0.21 -2.17 16 24 C -0.09 -2.87 9.90 83.45 0.83 -2.04 16 25 C 0.04 1.72 7.05 22.59 0.16 1.88 16 26 O -0.31 -13.64 9.76 -92.39 -0.90 -14.54 16 27 C 0.04 1.20 5.87 71.98 0.42 1.62 16 28 C -0.15 -3.66 10.28 71.98 0.74 -2.92 16 29 H 0.25 6.41 7.80 -4.41 -0.03 6.37 16 30 H 0.10 4.14 7.98 -2.39 -0.02 4.13 16 31 H 0.12 5.24 5.15 -2.39 -0.01 5.22 16 32 H 0.26 16.27 8.32 -92.71 -0.77 15.50 16 33 H 0.12 3.46 7.65 -2.91 -0.02 3.44 16 34 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 35 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 36 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 37 H 0.15 2.00 6.68 -2.91 -0.02 1.98 16 38 H 0.22 4.64 6.67 -2.91 -0.02 4.62 16 39 H 0.08 1.73 8.11 -2.38 -0.02 1.71 16 40 H 0.07 1.72 8.12 -2.39 -0.02 1.70 16 41 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 43 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -90.89 374.33 7.53 -83.36 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 1.03 Total: 21.10 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 7.85 Total: -1.41 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -2.45 Total: -101.41 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -0.93 Total: -51.60 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.95 kcal Total: -90.89 7.53 -83.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490962044.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.462 kcal (2) G-P(sol) polarization free energy of solvation -90.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds