Wall clock time and date at job start Sat Apr 11 2020 05:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 119.99888 * 2 1 4 4 C 1.50697 * 109.47298 * 89.99561 * 3 2 1 5 5 C 1.38392 * 119.99990 * 94.97844 * 4 3 2 6 6 N 1.32130 * 119.99340 * 179.76696 * 5 4 3 7 7 C 1.32156 * 120.00460 * 0.50944 * 6 5 4 8 8 C 1.38346 * 119.99867 * 359.48874 * 7 6 5 9 9 N 1.32125 * 120.00206 * 274.99582 * 4 3 2 10 10 C 1.34776 * 120.00287 * 179.97438 * 2 1 3 11 11 O 1.21718 * 120.00366 * 179.97438 * 10 2 1 12 12 C 1.46263 * 119.99526 * 0.02562 * 10 2 1 13 13 C 1.35022 * 119.99538 * 173.22388 * 12 10 2 14 14 C 1.46960 * 120.00138 * 348.67563 * 13 12 10 15 15 C 1.40023 * 120.10440 * 316.40126 * 14 13 12 16 16 C 1.37593 * 119.89578 * 179.69688 * 15 14 13 17 17 C 1.39177 * 120.10321 * 0.59749 * 16 15 14 18 18 O 1.35579 * 119.89655 * 179.69971 * 17 16 15 19 19 C 1.34784 * 116.99621 * 174.33894 * 18 17 16 20 20 H 1.08002 * 120.00194 * 5.06032 * 19 18 17 21 21 C 1.38712 * 119.99637 * 185.05785 * 19 18 17 22 22 N 1.31507 * 120.00219 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99860 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47282 * 59.99999 * 23 21 19 25 25 H 1.48505 * 109.47156 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47403 * 300.00088 * 23 21 19 27 27 C 1.39173 * 120.20457 * 359.67849 * 17 16 15 28 28 C 1.37600 * 120.09917 * 0.02562 * 27 17 16 29 29 H 1.09002 * 109.46598 * 90.00054 * 1 2 3 30 30 H 1.08999 * 109.47026 * 210.00188 * 1 2 3 31 31 H 1.08995 * 109.47110 * 330.00930 * 1 2 3 32 32 H 1.08997 * 109.47409 * 329.99456 * 3 2 1 33 33 H 1.09001 * 109.47114 * 209.99428 * 3 2 1 34 34 H 1.07995 * 120.00423 * 0.02562 * 5 4 3 35 35 H 1.07997 * 120.00063 * 179.77058 * 7 6 5 36 36 H 1.07991 * 119.99742 * 180.27546 * 8 7 6 37 37 H 1.07995 * 120.00020 * 353.22354 * 12 10 2 38 38 H 1.08004 * 119.99978 * 168.67948 * 13 12 10 39 39 H 1.07999 * 120.04841 * 359.97438 * 15 14 13 40 40 H 1.08005 * 119.94944 * 180.27545 * 16 15 14 41 41 H 0.97003 * 120.00175 * 179.97438 * 22 21 19 42 42 H 1.08002 * 119.95175 * 179.97438 * 27 17 16 43 43 H 1.07999 * 120.04937 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 1.4208 5 6 3.6469 1.3916 2.0386 6 7 3.8688 1.7771 3.2827 7 6 2.9425 2.4522 3.9406 8 6 1.7445 2.7644 3.3229 9 7 1.5245 2.3832 2.0768 10 6 2.1390 -1.1672 0.0005 11 8 3.3562 -1.1672 0.0001 12 6 1.4076 -2.4338 0.0005 13 6 2.0758 -3.5990 -0.1369 14 6 3.4909 -3.5923 -0.5333 15 6 3.9287 -2.7468 -1.5599 16 6 5.2558 -2.7395 -1.9233 17 6 6.1602 -3.5797 -1.2806 18 8 7.4658 -3.5735 -1.6461 19 6 8.3110 -4.3214 -0.9094 20 1 7.9268 -4.9537 -0.1225 21 6 9.6743 -4.2791 -1.1618 22 7 10.1420 -3.5096 -2.1202 23 14 10.8459 -5.3151 -0.1403 24 1 10.4974 -6.7507 -0.2914 25 1 12.2384 -5.0916 -0.6054 26 1 10.7333 -4.9263 1.2885 27 6 5.7286 -4.4260 -0.2635 28 6 4.4045 -4.4358 0.1107 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5137 32 1 1.6085 2.0283 -0.5139 33 1 3.1500 1.1384 -0.5137 34 1 4.4024 0.8364 1.5024 35 1 3.1224 2.7641 4.9587 36 1 0.9893 3.3198 3.8590 37 1 0.3333 -2.4370 0.1105 38 1 1.5702 -4.5361 0.0443 39 1 3.2267 -2.0982 -2.0627 40 1 5.5953 -2.0844 -2.7120 41 1 11.0954 -3.4798 -2.2965 42 1 6.4338 -5.0767 0.2322 43 1 4.0705 -5.0926 0.9004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491841533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:09 Heat of formation + Delta-G solvation = 56.413055 kcal Electronic energy + Delta-G solvation = -28207.998057 eV Core-core repulsion = 24220.843444 eV Total energy + Delta-G solvation = -3987.154612 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.28930 -39.87454 -38.76108 -36.74679 -35.57579 -34.30724 -33.23015 -32.36493 -31.98232 -30.12397 -28.62227 -27.73235 -26.30668 -25.39051 -24.72757 -23.71332 -22.30275 -21.72701 -20.56746 -18.53639 -17.91376 -17.77609 -17.25739 -17.00408 -16.79387 -16.40131 -16.11094 -15.03917 -14.83285 -14.60507 -14.50020 -14.13386 -13.86277 -13.54318 -13.47081 -13.37052 -13.02960 -12.88297 -12.78988 -12.55181 -12.43649 -12.17115 -12.03074 -11.74058 -11.68982 -11.39580 -11.31167 -10.98422 -10.65697 -10.64341 -10.41343 -9.71828 -9.46919 -9.35886 -9.30982 -9.16418 -8.72808 -8.68080 -7.91803 -6.86864 -6.45340 -4.01089 0.55538 0.95113 1.21064 2.41902 2.68736 2.98299 3.14247 3.16955 3.18353 3.51498 3.62962 3.85584 3.97865 4.13199 4.29898 4.63044 4.68876 4.72418 4.92727 5.01427 5.04412 5.11546 5.19965 5.32261 5.35632 5.36661 5.41926 5.52490 5.55169 5.62895 5.73814 5.84683 6.19130 6.22068 6.27724 6.37310 6.48461 6.59374 6.78738 7.03175 7.08381 7.12379 7.34411 7.40838 7.47843 7.50702 7.61032 7.92056 8.01176 8.40867 9.00278 9.71772 10.72351 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012306 B = 0.002885 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.680655 B = 9702.361896 C =11069.676832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.616 5.616 3 C 0.172 3.828 4 C 0.059 3.941 5 C 0.080 3.920 6 N -0.438 5.438 7 C 0.046 3.954 8 C 0.041 3.959 9 N -0.431 5.431 10 C 0.542 3.458 11 O -0.507 6.507 12 C -0.271 4.271 13 C 0.031 3.969 14 C -0.191 4.191 15 C 0.013 3.987 16 C -0.203 4.203 17 C 0.172 3.828 18 O -0.172 6.172 19 C -0.390 4.390 20 H 0.093 0.907 21 C 0.040 3.960 22 N -0.860 5.860 23 Si 0.941 3.059 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.269 1.269 27 C -0.250 4.250 28 C -0.040 4.040 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.177 0.823 35 H 0.167 0.833 36 H 0.168 0.832 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.101 0.899 40 H 0.114 0.886 41 H 0.271 0.729 42 H 0.125 0.875 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.874 8.752 7.387 23.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.351 5.351 3 C 0.047 3.953 4 C -0.082 4.082 5 C -0.080 4.080 6 N -0.152 5.152 7 C -0.113 4.113 8 C -0.119 4.119 9 N -0.147 5.147 10 C 0.334 3.666 11 O -0.382 6.382 12 C -0.292 4.292 13 C 0.012 3.988 14 C -0.192 4.192 15 C -0.006 4.006 16 C -0.222 4.222 17 C 0.117 3.883 18 O -0.074 6.074 19 C -0.466 4.466 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.494 5.494 23 Si 0.766 3.234 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.194 1.194 27 C -0.270 4.270 28 C -0.059 4.059 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.125 0.875 34 H 0.194 0.806 35 H 0.185 0.815 36 H 0.185 0.815 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.119 0.881 40 H 0.132 0.868 41 H 0.081 0.919 42 H 0.143 0.857 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -19.823 8.927 7.073 22.862 hybrid contribution 0.307 -0.381 0.871 0.999 sum -19.517 8.547 7.944 22.739 Atomic orbital electron populations 1.21807 0.79508 1.03197 1.01673 1.47814 1.06873 1.05065 1.75368 1.20145 0.99777 0.85901 0.89438 1.22755 0.91458 0.95120 0.98915 1.23929 0.97380 0.95428 0.91232 1.68559 1.31324 1.07502 1.07859 1.23826 0.91006 0.95248 1.01257 1.23717 0.97706 0.98551 0.91889 1.68236 1.30843 1.07736 1.07887 1.18589 0.87698 0.83979 0.76343 1.90977 1.12894 1.86446 1.47922 1.22658 0.99426 0.92252 1.14848 1.22368 0.93343 0.96483 0.86644 1.18286 0.92368 1.04956 1.03599 1.20427 0.93963 0.92486 0.93687 1.20000 0.92412 1.04104 1.05675 1.19528 0.85512 0.91947 0.91328 1.83908 1.12668 1.60813 1.50014 1.21346 0.86996 1.22622 1.15678 0.88942 1.25314 0.96533 0.97496 0.97144 1.70011 1.14598 1.36103 1.28684 0.85778 0.78738 0.79478 0.79452 1.19449 1.20245 1.19416 1.20947 0.96295 1.05956 1.03768 1.20739 0.92738 0.95615 0.96795 0.92604 0.91012 0.90948 0.88739 0.87475 0.80593 0.81541 0.81522 0.85914 0.86110 0.88072 0.86825 0.91889 0.85696 0.87702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.19 59.85 0.61 1.25 16 2 N -0.62 -6.97 2.86 -184.67 -0.53 -7.50 16 3 C 0.17 1.86 5.74 -5.20 -0.03 1.83 16 4 C 0.06 0.71 6.37 -82.41 -0.52 0.19 16 5 C 0.08 1.10 10.86 -17.37 -0.19 0.91 16 6 N -0.44 -5.93 10.50 -13.06 -0.14 -6.07 16 7 C 0.05 0.46 11.22 -17.37 -0.20 0.26 16 8 C 0.04 0.37 11.23 -17.37 -0.19 0.18 16 9 N -0.43 -4.74 10.42 -9.29 -0.10 -4.84 16 10 C 0.54 7.77 6.64 -13.04 -0.09 7.68 16 11 O -0.51 -9.17 11.73 5.17 0.06 -9.11 16 12 C -0.27 -3.40 9.14 -37.50 -0.34 -3.74 16 13 C 0.03 0.43 9.80 -37.19 -0.36 0.07 16 14 C -0.19 -3.46 4.54 -105.02 -0.48 -3.93 16 15 C 0.01 0.25 6.59 -39.15 -0.26 -0.01 16 16 C -0.20 -4.54 9.97 -39.47 -0.39 -4.94 16 17 C 0.17 4.32 6.66 -38.89 -0.26 4.06 16 18 O -0.17 -5.02 9.74 0.70 0.01 -5.01 16 19 C -0.39 -11.10 9.48 30.91 0.29 -10.81 16 20 H 0.09 2.44 5.18 -52.49 -0.27 2.16 16 21 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 22 N -0.86 -25.46 13.67 55.48 0.76 -24.70 16 23 Si 0.94 20.77 29.55 -169.99 -5.02 15.75 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 C -0.25 -5.67 9.14 -39.47 -0.36 -6.03 16 28 C -0.04 -0.78 9.78 -39.14 -0.38 -1.16 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.51 6.02 -51.93 -0.31 0.20 16 31 H 0.07 0.54 8.07 -51.93 -0.42 0.13 16 32 H 0.09 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.11 1.26 7.33 -51.93 -0.38 0.88 16 34 H 0.18 2.60 8.03 -52.49 -0.42 2.17 16 35 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 37 H 0.12 1.14 6.14 -52.49 -0.32 0.81 16 38 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 39 H 0.10 1.77 7.02 -52.49 -0.37 1.40 16 40 H 0.11 2.48 8.06 -52.48 -0.42 2.06 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.13 2.81 5.62 -52.49 -0.29 2.52 16 43 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 370.87 15.07 5.59 5.59 Total: -1.00 -34.86 370.87 -7.50 -42.36 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -4.88 Total: 6.68 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -3.25 Total: -13.17 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.00 Total: -43.10 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.07 Total: -14.12 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.86 -7.50 -42.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491841533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.776 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds