Wall clock time and date at job start Sat Apr 11 2020 05:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 119.99888 * 2 1 4 4 C 1.50697 * 109.47298 * 89.99561 * 3 2 1 5 5 C 1.38392 * 119.99990 * 94.97844 * 4 3 2 6 6 N 1.32130 * 119.99340 * 179.76696 * 5 4 3 7 7 C 1.32156 * 120.00460 * 0.50944 * 6 5 4 8 8 C 1.38346 * 119.99867 * 359.48874 * 7 6 5 9 9 N 1.32125 * 120.00206 * 274.99582 * 4 3 2 10 10 C 1.34776 * 120.00287 * 179.97438 * 2 1 3 11 11 O 1.21718 * 120.00366 * 179.97438 * 10 2 1 12 12 C 1.46263 * 119.99526 * 0.02562 * 10 2 1 13 13 C 1.35022 * 119.99538 * 173.22388 * 12 10 2 14 14 C 1.46960 * 120.00138 * 348.67563 * 13 12 10 15 15 C 1.40023 * 120.10440 * 316.40126 * 14 13 12 16 16 C 1.37593 * 119.89578 * 179.69688 * 15 14 13 17 17 C 1.39177 * 120.10321 * 0.59749 * 16 15 14 18 18 O 1.35579 * 119.89655 * 179.69971 * 17 16 15 19 19 C 1.34784 * 116.99621 * 174.33894 * 18 17 16 20 20 H 1.08002 * 120.00194 * 5.06032 * 19 18 17 21 21 C 1.38712 * 119.99637 * 185.05785 * 19 18 17 22 22 N 1.31507 * 120.00219 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99860 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47282 * 59.99999 * 23 21 19 25 25 H 1.48505 * 109.47156 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47403 * 300.00088 * 23 21 19 27 27 C 1.39173 * 120.20457 * 359.67849 * 17 16 15 28 28 C 1.37600 * 120.09917 * 0.02562 * 27 17 16 29 29 H 1.09002 * 109.46598 * 90.00054 * 1 2 3 30 30 H 1.08999 * 109.47026 * 210.00188 * 1 2 3 31 31 H 1.08995 * 109.47110 * 330.00930 * 1 2 3 32 32 H 1.08997 * 109.47409 * 329.99456 * 3 2 1 33 33 H 1.09001 * 109.47114 * 209.99428 * 3 2 1 34 34 H 1.07995 * 120.00423 * 0.02562 * 5 4 3 35 35 H 1.07997 * 120.00063 * 179.77058 * 7 6 5 36 36 H 1.07991 * 119.99742 * 180.27546 * 8 7 6 37 37 H 1.07995 * 120.00020 * 353.22354 * 12 10 2 38 38 H 1.08004 * 119.99978 * 168.67948 * 13 12 10 39 39 H 1.07999 * 120.04841 * 359.97438 * 15 14 13 40 40 H 1.08005 * 119.94944 * 180.27545 * 16 15 14 41 41 H 0.97003 * 120.00175 * 179.97438 * 22 21 19 42 42 H 1.08002 * 119.95175 * 179.97438 * 27 17 16 43 43 H 1.07999 * 120.04937 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 1.4208 5 6 3.6469 1.3916 2.0386 6 7 3.8688 1.7771 3.2827 7 6 2.9425 2.4522 3.9406 8 6 1.7445 2.7644 3.3229 9 7 1.5245 2.3832 2.0768 10 6 2.1390 -1.1672 0.0005 11 8 3.3562 -1.1672 0.0001 12 6 1.4076 -2.4338 0.0005 13 6 2.0758 -3.5990 -0.1369 14 6 3.4909 -3.5923 -0.5333 15 6 3.9287 -2.7468 -1.5599 16 6 5.2558 -2.7395 -1.9233 17 6 6.1602 -3.5797 -1.2806 18 8 7.4658 -3.5735 -1.6461 19 6 8.3110 -4.3214 -0.9094 20 1 7.9268 -4.9537 -0.1225 21 6 9.6743 -4.2791 -1.1618 22 7 10.1420 -3.5096 -2.1202 23 14 10.8459 -5.3151 -0.1403 24 1 10.4974 -6.7507 -0.2914 25 1 12.2384 -5.0916 -0.6054 26 1 10.7333 -4.9263 1.2885 27 6 5.7286 -4.4260 -0.2635 28 6 4.4045 -4.4358 0.1107 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5137 32 1 1.6085 2.0283 -0.5139 33 1 3.1500 1.1384 -0.5137 34 1 4.4024 0.8364 1.5024 35 1 3.1224 2.7641 4.9587 36 1 0.9893 3.3198 3.8590 37 1 0.3333 -2.4370 0.1105 38 1 1.5702 -4.5361 0.0443 39 1 3.2267 -2.0982 -2.0627 40 1 5.5953 -2.0844 -2.7120 41 1 11.0954 -3.4798 -2.2965 42 1 6.4338 -5.0767 0.2322 43 1 4.0705 -5.0926 0.9004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491841533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:08 Heat of formation + Delta-G solvation = 32.380684 kcal Electronic energy + Delta-G solvation = -28209.040179 eV Core-core repulsion = 24220.843444 eV Total energy + Delta-G solvation = -3988.196734 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.16638 -41.11780 -40.42027 -38.32361 -36.73103 -35.20842 -34.65111 -34.02521 -33.08053 -31.81260 -29.91312 -28.78528 -27.49825 -27.08788 -25.60711 -24.79337 -23.67704 -23.28321 -21.93539 -19.97838 -19.48373 -18.86436 -18.57034 -18.18295 -17.87635 -17.27065 -17.18178 -16.38194 -16.27007 -16.09046 -15.77013 -15.51817 -15.39322 -15.10577 -14.56911 -14.50998 -14.50215 -14.15971 -13.80195 -13.70924 -13.55810 -13.52861 -13.30393 -13.04140 -12.82437 -12.63703 -12.60821 -12.35865 -12.27092 -12.18486 -12.09863 -11.23780 -10.96152 -10.73520 -10.37937 -10.29804 -10.22653 -9.76580 -9.44913 -8.55137 -8.48286 -6.15549 -0.29405 -0.02159 0.07718 0.72765 1.12295 1.32767 1.46189 1.49741 2.09184 2.16961 2.42132 2.75857 2.87277 3.04221 3.21649 3.27940 3.48798 3.53617 3.77118 3.86599 3.99656 4.10196 4.15104 4.17699 4.33844 4.35397 4.50288 4.55234 4.55807 4.57674 4.63233 4.76810 4.81189 4.99266 5.05811 5.09936 5.23326 5.27805 5.37022 5.41593 5.54502 5.68677 5.73377 5.84527 6.02660 6.22807 6.25723 6.46489 6.75054 6.95555 7.32561 7.77816 8.74548 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012306 B = 0.002885 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.680655 B = 9702.361896 C =11069.676832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.608 5.608 3 C 0.172 3.828 4 C 0.058 3.942 5 C 0.051 3.949 6 N -0.473 5.473 7 C 0.046 3.954 8 C 0.056 3.944 9 N -0.435 5.435 10 C 0.526 3.474 11 O -0.556 6.556 12 C -0.236 4.236 13 C 0.009 3.991 14 C -0.161 4.161 15 C 0.018 3.982 16 C -0.219 4.219 17 C 0.128 3.872 18 O -0.230 6.230 19 C -0.416 4.416 20 H 0.101 0.899 21 C -0.023 4.023 22 N -0.921 5.921 23 Si 1.020 2.980 24 H -0.254 1.254 25 H -0.270 1.270 26 H -0.260 1.260 27 C -0.260 4.260 28 C -0.048 4.048 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.147 0.853 35 H 0.203 0.797 36 H 0.214 0.786 37 H 0.172 0.828 38 H 0.168 0.832 39 H 0.122 0.878 40 H 0.102 0.898 41 H 0.273 0.727 42 H 0.118 0.882 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.234 8.879 10.100 29.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.341 5.341 3 C 0.047 3.953 4 C -0.082 4.082 5 C -0.108 4.108 6 N -0.188 5.188 7 C -0.114 4.114 8 C -0.105 4.105 9 N -0.151 5.151 10 C 0.318 3.682 11 O -0.436 6.436 12 C -0.257 4.257 13 C -0.010 4.010 14 C -0.161 4.161 15 C 0.000 4.000 16 C -0.238 4.238 17 C 0.077 3.923 18 O -0.137 6.137 19 C -0.492 4.492 20 H 0.119 0.881 21 C -0.220 4.220 22 N -0.558 5.558 23 Si 0.838 3.162 24 H -0.178 1.178 25 H -0.194 1.194 26 H -0.184 1.184 27 C -0.279 4.279 28 C -0.066 4.066 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.138 0.862 33 H 0.104 0.896 34 H 0.164 0.836 35 H 0.220 0.780 36 H 0.230 0.770 37 H 0.189 0.811 38 H 0.185 0.815 39 H 0.139 0.861 40 H 0.120 0.880 41 H 0.082 0.918 42 H 0.136 0.864 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -25.292 9.059 9.766 28.585 hybrid contribution 1.357 -0.115 0.201 1.377 sum -23.935 8.944 9.967 27.427 Atomic orbital electron populations 1.22089 0.76791 1.04417 1.03380 1.47887 1.08483 1.04293 1.73456 1.20161 0.99460 0.86449 0.89206 1.22654 0.91001 0.95416 0.99156 1.23609 0.97995 0.97214 0.91964 1.68470 1.33336 1.08886 1.08101 1.24491 0.90601 0.93867 1.02484 1.24477 0.98063 0.96881 0.91066 1.68325 1.30252 1.07721 1.08828 1.19163 0.87402 0.85578 0.76033 1.90991 1.15164 1.87280 1.50175 1.23122 1.01442 0.90477 1.10616 1.22594 0.90618 0.99143 0.88657 1.18849 0.94957 1.01517 1.00813 1.20656 0.92715 0.92668 0.93999 1.20182 0.93841 1.04060 1.05758 1.20015 0.84875 0.93981 0.93394 1.83876 1.14391 1.63237 1.52152 1.21832 0.87823 1.23200 1.16337 0.88130 1.26641 0.98050 0.98902 0.98445 1.70166 1.15011 1.39161 1.31503 0.84646 0.75973 0.77964 0.77597 1.17788 1.19389 1.18399 1.21072 0.98016 1.05542 1.03262 1.21155 0.91281 0.96551 0.97617 0.90590 0.89428 0.90171 0.86215 0.89579 0.83593 0.78043 0.76987 0.81130 0.81510 0.86057 0.87961 0.91761 0.86434 0.83771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 10.19 127.77 1.30 2.12 16 2 N -0.61 -12.04 2.86 -856.38 -2.45 -14.49 16 3 C 0.17 3.56 5.74 85.63 0.49 4.06 16 4 C 0.06 1.34 6.37 42.55 0.27 1.61 16 5 C 0.05 1.45 10.86 84.68 0.92 2.37 16 6 N -0.47 -12.82 10.50 -195.22 -2.05 -14.87 16 7 C 0.05 0.80 11.22 84.67 0.95 1.75 16 8 C 0.06 0.80 11.23 84.67 0.95 1.75 16 9 N -0.44 -8.32 10.42 -183.30 -1.91 -10.23 16 10 C 0.53 13.77 6.64 86.33 0.57 14.35 16 11 O -0.56 -20.20 11.73 -4.41 -0.05 -20.25 16 12 C -0.24 -4.69 9.14 23.62 0.22 -4.47 16 13 C 0.01 0.21 9.80 23.82 0.23 0.44 16 14 C -0.16 -5.51 4.54 -20.13 -0.09 -5.60 16 15 C 0.02 0.70 6.59 22.55 0.15 0.85 16 16 C -0.22 -10.56 9.97 22.34 0.22 -10.34 16 17 C 0.13 6.97 6.66 22.72 0.15 7.13 16 18 O -0.23 -14.80 9.74 -20.40 -0.20 -15.00 16 19 C -0.42 -25.56 9.48 67.93 0.64 -24.92 16 20 H 0.10 5.69 5.18 -2.91 -0.02 5.68 16 21 C -0.02 -1.36 5.49 84.85 0.47 -0.89 16 22 N -0.92 -58.74 13.67 21.62 0.30 -58.44 16 23 Si 1.02 44.67 29.55 68.60 2.03 46.69 16 24 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 26 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 27 C -0.26 -12.31 9.14 22.34 0.20 -12.10 16 28 C -0.05 -1.80 9.78 22.55 0.22 -1.58 16 29 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.09 0.70 6.02 -2.39 -0.01 0.68 16 31 H 0.08 0.82 8.07 -2.39 -0.02 0.80 16 32 H 0.12 1.83 8.07 -2.39 -0.02 1.81 16 33 H 0.09 2.15 7.33 -2.39 -0.02 2.13 16 34 H 0.15 4.89 8.03 -2.91 -0.02 4.87 16 35 H 0.20 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.21 1.01 8.06 -2.92 -0.02 0.98 16 37 H 0.17 1.84 6.14 -2.91 -0.02 1.82 16 38 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 39 H 0.12 4.16 7.02 -2.91 -0.02 4.14 16 40 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 41 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 42 H 0.12 5.61 5.62 -2.91 -0.02 5.59 16 43 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -87.28 370.87 4.59 -82.69 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 1.05 Total: 27.39 kcal Atomic # 6 Polarization: -31.37 SS G_CDS: 7.87 Total: -23.50 kcal Atomic # 7 Polarization: -91.93 SS G_CDS: -6.11 Total: -98.04 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -0.25 Total: -35.25 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -87.28 4.59 -82.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491841533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.075 kcal (2) G-P(sol) polarization free energy of solvation -87.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds