Wall clock time and date at job start Sat Apr 11 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 120.00344 * 2 1 4 4 C 1.53000 * 109.46774 * 296.34278 * 3 2 1 5 5 C 1.53000 * 117.49919 * 242.98349 * 4 3 2 6 6 C 1.52998 * 60.00204 * 252.51068 * 5 4 3 7 7 S 1.65605 * 120.00171 * 179.97438 * 2 1 3 8 8 O 1.42104 * 106.39726 * 327.79261 * 7 2 1 9 9 O 1.42102 * 106.40408 * 194.87182 * 7 2 1 10 10 N 1.65600 * 107.21716 * 81.32869 * 7 2 1 11 11 C 1.46501 * 119.99960 * 95.09226 * 10 7 2 12 12 C 1.50700 * 109.47006 * 253.47052 * 11 10 7 13 13 H 1.08002 * 119.99994 * 0.43764 * 12 11 10 14 14 C 1.37878 * 119.99919 * 180.44814 * 12 11 10 15 15 N 1.31516 * 120.00111 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99757 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47282 * 90.00044 * 16 14 12 18 18 H 1.48506 * 109.47134 * 209.99413 * 16 14 12 19 19 H 1.48495 * 109.47172 * 329.99750 * 16 14 12 20 20 C 1.46503 * 119.99984 * 275.08839 * 10 7 2 21 21 C 1.50699 * 109.47057 * 259.80569 * 20 10 7 22 22 C 1.38234 * 119.61390 * 94.04798 * 21 20 10 23 23 C 1.38625 * 119.15542 * 179.74757 * 22 21 20 24 24 C 1.38678 * 118.42394 * 0.46911 * 23 22 21 25 25 C 1.38176 * 119.16004 * 359.51001 * 24 23 22 26 26 N 1.31849 * 119.62294 * 274.02591 * 21 20 10 27 27 H 1.08997 * 109.47110 * 269.99926 * 1 2 3 28 28 H 1.09002 * 109.47238 * 29.99873 * 1 2 3 29 29 H 1.08997 * 109.47292 * 150.00427 * 1 2 3 30 30 H 1.09003 * 109.46962 * 56.33602 * 3 2 1 31 31 H 1.08993 * 109.47627 * 176.34640 * 3 2 1 32 32 H 1.08997 * 115.55424 * 28.69673 * 4 3 2 33 33 H 1.08998 * 117.49953 * 0.02562 * 5 4 3 34 34 H 1.09011 * 117.49773 * 145.02100 * 5 4 3 35 35 H 1.08995 * 117.49765 * 252.51053 * 6 5 4 36 36 H 1.08999 * 117.49420 * 107.49226 * 6 5 4 37 37 H 1.09002 * 109.46971 * 13.46256 * 11 10 7 38 38 H 1.08991 * 109.47229 * 133.46485 * 11 10 7 39 39 H 0.96994 * 119.99990 * 179.97438 * 15 14 12 40 40 H 1.08999 * 109.46527 * 139.80776 * 20 10 7 41 41 H 1.08992 * 109.47309 * 19.80873 * 20 10 7 42 42 H 1.07992 * 120.41969 * 359.95398 * 22 21 20 43 43 H 1.08005 * 120.78806 * 180.23453 * 23 22 21 44 44 H 1.08004 * 120.41805 * 179.78359 * 24 23 22 45 45 H 1.08006 * 119.61642 * 180.24422 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 1.8982 2.0304 -1.2927 5 6 3.0679 2.2980 -2.2420 6 6 2.4663 3.4447 -1.4271 7 16 2.2930 -1.4342 0.0006 8 8 1.4947 -2.3580 0.7276 9 8 3.6347 -1.1228 0.3504 10 7 2.3316 -1.9786 -1.5628 11 6 3.4887 -1.6854 -2.4122 12 6 3.1150 -0.6335 -3.4246 13 1 2.1177 -0.2191 -3.4297 14 6 4.0464 -0.2002 -4.3443 15 7 5.2610 -0.7046 -4.3378 16 14 3.5830 1.1032 -5.5996 17 1 3.8712 2.4500 -5.0442 18 1 4.3741 0.8995 -6.8397 19 1 2.1353 0.9963 -5.9127 20 6 1.2087 -2.7535 -2.0966 21 6 1.5546 -4.2200 -2.0740 22 6 1.1747 -4.9950 -0.9942 23 6 1.4932 -6.3441 -0.9858 24 6 2.1937 -6.8637 -2.0639 25 6 2.5395 -6.0275 -3.1082 26 7 2.2157 -4.7493 -3.0846 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5137 30 1 1.8859 1.8682 0.8554 31 1 3.2673 1.0706 0.0655 32 1 0.9226 1.8355 -1.7381 33 1 4.0506 1.9311 -1.9458 34 1 2.8620 2.2790 -3.3123 35 1 1.8646 4.1800 -1.9612 36 1 3.0533 3.8325 -0.5946 37 1 4.3094 -1.3202 -1.7948 38 1 3.7992 -2.5933 -2.9292 39 1 5.9160 -0.4000 -4.9851 40 1 1.0081 -2.4432 -3.1220 41 1 0.3237 -2.5794 -1.4846 42 1 0.6337 -4.5556 -0.1693 43 1 1.2060 -6.9748 -0.1573 44 1 2.4617 -7.9097 -2.0891 45 1 3.0816 -6.4253 -3.9535 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523412275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:18 Heat of formation + Delta-G solvation = -1.388309 kcal Electronic energy + Delta-G solvation = -29315.749611 eV Core-core repulsion = 25461.532495 eV Total energy + Delta-G solvation = -3854.217116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.83994 -37.61177 -36.74135 -35.75325 -35.27844 -34.75282 -32.65663 -32.09023 -31.04368 -27.84975 -27.43053 -25.50776 -24.77634 -23.20725 -22.54112 -21.77398 -21.38372 -20.08780 -18.51629 -17.44084 -16.97395 -16.57822 -16.21709 -16.07299 -15.73639 -15.14501 -14.98453 -14.83774 -14.44841 -13.92899 -13.70553 -13.30218 -13.21036 -13.01312 -12.88197 -12.62955 -12.39147 -12.18400 -12.11880 -11.74137 -11.67735 -11.48112 -11.29570 -11.21528 -11.13746 -11.05233 -10.85448 -10.64803 -10.42580 -9.99207 -9.85483 -9.72112 -9.56980 -9.42721 -9.05034 -8.77572 -8.68884 -8.37708 -8.00825 -5.99643 -4.01679 1.10419 1.44779 1.60622 3.26119 3.33999 3.36311 3.40435 3.95791 4.25313 4.33517 4.43278 4.63348 4.87096 4.98580 5.05366 5.10710 5.19951 5.30585 5.35546 5.40071 5.41308 5.50378 5.55804 5.64663 5.72592 5.78008 5.84546 5.92482 5.99564 6.05541 6.06039 6.17871 6.27000 6.34060 6.43983 6.60082 6.61703 6.71336 6.80623 6.90573 7.00072 7.47341 7.51066 7.71474 7.96951 8.29096 8.41714 8.99943 9.60632 11.09577 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010784 B = 0.005905 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.815911 B = 4740.361685 C = 6575.723660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -1.005 6.005 3 C 0.154 3.846 4 C -0.165 4.165 5 C -0.144 4.144 6 C -0.195 4.195 7 S 2.780 3.220 8 O -0.996 6.996 9 O -0.976 6.976 10 N -0.981 5.981 11 C 0.245 3.755 12 C -0.515 4.515 13 H 0.061 0.939 14 C 0.068 3.932 15 N -0.891 5.891 16 Si 0.880 3.120 17 H -0.274 1.274 18 H -0.291 1.291 19 H -0.275 1.275 20 C 0.182 3.818 21 C 0.119 3.881 22 C -0.160 4.160 23 C -0.085 4.085 24 C -0.182 4.182 25 C 0.095 3.905 26 N -0.453 5.453 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.045 0.955 39 H 0.261 0.739 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.143 0.857 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.974 -2.311 6.674 12.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.843 5.843 3 C 0.028 3.972 4 C -0.184 4.184 5 C -0.180 4.180 6 C -0.233 4.233 7 S 2.790 3.210 8 O -0.979 6.979 9 O -0.960 6.960 10 N -0.821 5.821 11 C 0.123 3.877 12 C -0.555 4.555 13 H 0.080 0.920 14 C -0.134 4.134 15 N -0.530 5.530 16 Si 0.708 3.292 17 H -0.200 1.200 18 H -0.217 1.217 19 H -0.200 1.200 20 C 0.054 3.946 21 C -0.021 4.021 22 C -0.181 4.181 23 C -0.111 4.111 24 C -0.202 4.202 25 C -0.063 4.063 26 N -0.162 5.162 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.119 0.881 41 H 0.096 0.904 42 H 0.161 0.839 43 H 0.147 0.853 44 H 0.146 0.854 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.172 -2.165 6.660 11.540 hybrid contribution -0.543 0.287 -0.579 0.845 sum -9.716 -1.878 6.080 11.614 Atomic orbital electron populations 1.21346 0.79463 1.02672 1.01271 1.57858 1.14676 1.22159 1.89591 1.20863 0.97261 0.83452 0.95594 1.22529 0.99560 0.97247 0.99103 1.23096 0.97995 0.99218 0.97741 1.22994 1.05086 0.91396 1.03844 1.01957 0.72894 0.72662 0.73517 1.93519 1.71677 1.61698 1.71038 1.93565 1.35211 1.84420 1.82804 1.57748 1.28098 1.64472 1.31821 1.19272 0.81266 0.97498 0.89627 1.21353 0.98025 1.21300 1.14808 0.92033 1.24830 0.94868 0.96515 0.97180 1.69930 1.03778 1.42864 1.36414 0.86908 0.78441 0.82524 0.81297 1.20007 1.21728 1.20043 1.19889 0.87759 0.84401 1.02503 1.21846 0.93339 0.97239 0.89724 1.22242 1.01714 0.94480 0.99650 1.21531 0.96351 0.95337 0.97852 1.22105 1.01067 1.01201 0.95803 1.22793 0.96662 0.89208 0.97643 1.67618 1.09266 1.12724 1.26627 0.92970 0.91094 0.91894 0.91576 0.88510 0.87898 0.88013 0.88837 0.89600 0.89293 0.93312 0.93739 0.92881 0.88118 0.90405 0.83941 0.85289 0.85351 0.83082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.22 10.13 59.85 0.61 1.83 16 2 N -1.00 -16.08 3.36 -121.76 -0.41 -16.49 16 3 C 0.15 2.41 6.17 -4.04 -0.02 2.38 16 4 C -0.16 -2.57 5.71 -90.62 -0.52 -3.09 16 5 C -0.14 -2.62 8.86 -26.73 -0.24 -2.85 16 6 C -0.20 -2.79 10.25 -26.73 -0.27 -3.06 16 7 S 2.78 54.03 5.96 -107.50 -0.64 53.39 16 8 O -1.00 -19.10 15.64 -57.17 -0.89 -19.99 16 9 O -0.98 -22.33 14.87 -57.17 -0.85 -23.18 16 10 N -0.98 -19.99 2.88 -116.95 -0.34 -20.33 16 11 C 0.25 6.05 5.50 -5.19 -0.03 6.02 16 12 C -0.52 -12.92 7.72 -34.44 -0.27 -13.18 16 13 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 14 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 15 N -0.89 -25.25 13.29 55.43 0.74 -24.51 16 16 Si 0.88 20.34 27.13 -169.99 -4.61 15.73 16 17 H -0.27 -6.07 6.50 56.52 0.37 -5.70 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 C 0.18 3.23 5.65 -5.19 -0.03 3.20 16 21 C 0.12 2.13 6.30 -82.59 -0.52 1.61 16 22 C -0.16 -2.53 9.57 -39.44 -0.38 -2.91 16 23 C -0.08 -1.14 10.18 -39.28 -0.40 -1.54 16 24 C -0.18 -2.37 10.11 -39.44 -0.40 -2.77 16 25 C 0.09 1.46 11.18 -17.55 -0.20 1.26 16 26 N -0.45 -8.57 9.98 -9.47 -0.09 -8.67 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.76 6.74 -51.93 -0.35 0.41 16 29 H 0.06 0.73 6.74 -51.93 -0.35 0.38 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.10 1.72 6.40 -51.93 -0.33 1.39 16 32 H 0.10 1.55 6.87 -51.93 -0.36 1.19 16 33 H 0.10 2.04 8.03 -51.93 -0.42 1.63 16 34 H 0.09 1.86 4.63 -51.92 -0.24 1.62 16 35 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.05 1.34 6.72 -51.93 -0.35 0.99 16 38 H 0.04 1.21 7.84 -51.93 -0.41 0.80 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.10 1.86 7.86 -51.93 -0.41 1.45 16 41 H 0.08 1.13 6.22 -51.93 -0.32 0.81 16 42 H 0.14 2.14 7.26 -52.49 -0.38 1.76 16 43 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 44 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 45 H 0.15 1.95 8.06 -52.48 -0.42 1.53 16 LS Contribution 374.79 15.07 5.65 5.65 Total: -1.00 -31.69 374.79 -10.67 -42.35 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -6.45 Total: 7.44 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -2.76 Total: -11.39 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -0.10 Total: -70.00 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: -1.74 Total: -43.18 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.61 Total: 15.73 kcal Atomic # 16 Polarization: 54.03 SS G_CDS: -0.64 Total: 53.39 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.69 -10.67 -42.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523412275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.966 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds