Wall clock time and date at job start Sat Apr 11 2020 05:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 120.00344 * 2 1 4 4 C 1.53000 * 109.46774 * 296.34278 * 3 2 1 5 5 C 1.53000 * 117.49919 * 242.98349 * 4 3 2 6 6 C 1.52998 * 60.00204 * 252.51068 * 5 4 3 7 7 S 1.65605 * 120.00171 * 179.97438 * 2 1 3 8 8 O 1.42104 * 106.39726 * 327.79261 * 7 2 1 9 9 O 1.42102 * 106.40408 * 194.87182 * 7 2 1 10 10 N 1.65600 * 107.21716 * 81.32869 * 7 2 1 11 11 C 1.46501 * 119.99960 * 95.09226 * 10 7 2 12 12 C 1.50700 * 109.47006 * 253.47052 * 11 10 7 13 13 H 1.08002 * 119.99994 * 0.43764 * 12 11 10 14 14 C 1.37878 * 119.99919 * 180.44814 * 12 11 10 15 15 N 1.31516 * 120.00111 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99757 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47282 * 90.00044 * 16 14 12 18 18 H 1.48506 * 109.47134 * 209.99413 * 16 14 12 19 19 H 1.48495 * 109.47172 * 329.99750 * 16 14 12 20 20 C 1.46503 * 119.99984 * 275.08839 * 10 7 2 21 21 C 1.50699 * 109.47057 * 259.80569 * 20 10 7 22 22 C 1.38234 * 119.61390 * 94.04798 * 21 20 10 23 23 C 1.38625 * 119.15542 * 179.74757 * 22 21 20 24 24 C 1.38678 * 118.42394 * 0.46911 * 23 22 21 25 25 C 1.38176 * 119.16004 * 359.51001 * 24 23 22 26 26 N 1.31849 * 119.62294 * 274.02591 * 21 20 10 27 27 H 1.08997 * 109.47110 * 269.99926 * 1 2 3 28 28 H 1.09002 * 109.47238 * 29.99873 * 1 2 3 29 29 H 1.08997 * 109.47292 * 150.00427 * 1 2 3 30 30 H 1.09003 * 109.46962 * 56.33602 * 3 2 1 31 31 H 1.08993 * 109.47627 * 176.34640 * 3 2 1 32 32 H 1.08997 * 115.55424 * 28.69673 * 4 3 2 33 33 H 1.08998 * 117.49953 * 0.02562 * 5 4 3 34 34 H 1.09011 * 117.49773 * 145.02100 * 5 4 3 35 35 H 1.08995 * 117.49765 * 252.51053 * 6 5 4 36 36 H 1.08999 * 117.49420 * 107.49226 * 6 5 4 37 37 H 1.09002 * 109.46971 * 13.46256 * 11 10 7 38 38 H 1.08991 * 109.47229 * 133.46485 * 11 10 7 39 39 H 0.96994 * 119.99990 * 179.97438 * 15 14 12 40 40 H 1.08999 * 109.46527 * 139.80776 * 20 10 7 41 41 H 1.08992 * 109.47309 * 19.80873 * 20 10 7 42 42 H 1.07992 * 120.41969 * 359.95398 * 22 21 20 43 43 H 1.08005 * 120.78806 * 180.23453 * 23 22 21 44 44 H 1.08004 * 120.41805 * 179.78359 * 24 23 22 45 45 H 1.08006 * 119.61642 * 180.24422 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 1.8982 2.0304 -1.2927 5 6 3.0679 2.2980 -2.2420 6 6 2.4663 3.4447 -1.4271 7 16 2.2930 -1.4342 0.0006 8 8 1.4947 -2.3580 0.7276 9 8 3.6347 -1.1228 0.3504 10 7 2.3316 -1.9786 -1.5628 11 6 3.4887 -1.6854 -2.4122 12 6 3.1150 -0.6335 -3.4246 13 1 2.1177 -0.2191 -3.4297 14 6 4.0464 -0.2002 -4.3443 15 7 5.2610 -0.7046 -4.3378 16 14 3.5830 1.1032 -5.5996 17 1 3.8712 2.4500 -5.0442 18 1 4.3741 0.8995 -6.8397 19 1 2.1353 0.9963 -5.9127 20 6 1.2087 -2.7535 -2.0966 21 6 1.5546 -4.2200 -2.0740 22 6 1.1747 -4.9950 -0.9942 23 6 1.4932 -6.3441 -0.9858 24 6 2.1937 -6.8637 -2.0639 25 6 2.5395 -6.0275 -3.1082 26 7 2.2157 -4.7493 -3.0846 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5137 30 1 1.8859 1.8682 0.8554 31 1 3.2673 1.0706 0.0655 32 1 0.9226 1.8355 -1.7381 33 1 4.0506 1.9311 -1.9458 34 1 2.8620 2.2790 -3.3123 35 1 1.8646 4.1800 -1.9612 36 1 3.0533 3.8325 -0.5946 37 1 4.3094 -1.3202 -1.7948 38 1 3.7992 -2.5933 -2.9292 39 1 5.9160 -0.4000 -4.9851 40 1 1.0081 -2.4432 -3.1220 41 1 0.3237 -2.5794 -1.4846 42 1 0.6337 -4.5556 -0.1693 43 1 1.2060 -6.9748 -0.1573 44 1 2.4617 -7.9097 -2.0891 45 1 3.0816 -6.4253 -3.9535 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523412275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:17 Heat of formation + Delta-G solvation = -22.957855 kcal Electronic energy + Delta-G solvation = -29316.684936 eV Core-core repulsion = 25461.532495 eV Total energy + Delta-G solvation = -3855.152442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.04536 -38.89180 -38.33003 -37.37005 -36.90280 -36.00320 -34.56965 -33.28677 -32.43994 -29.29814 -28.89118 -27.09334 -26.01231 -24.49893 -24.18560 -23.05217 -22.76755 -21.36637 -19.97594 -18.92072 -18.53534 -18.29251 -17.70816 -17.43016 -16.98108 -16.61988 -16.40402 -16.27404 -15.78444 -15.42817 -15.08774 -14.75224 -14.42539 -14.35123 -14.17576 -14.05260 -13.80076 -13.67578 -13.52706 -13.33443 -13.09085 -12.99129 -12.93222 -12.71764 -12.60845 -12.47669 -12.43845 -12.20709 -12.07654 -11.79259 -11.66976 -11.08449 -10.75220 -10.71871 -10.46190 -10.36939 -9.99050 -9.91599 -9.64825 -8.05919 -6.13360 -0.38505 0.23328 0.46325 1.41035 1.43399 1.50455 1.95011 2.46295 2.51222 2.97664 3.06040 3.28559 3.37679 3.46011 3.76110 3.86839 3.97876 4.05920 4.11521 4.13198 4.31393 4.32704 4.35209 4.48533 4.58063 4.66987 4.71970 4.74266 4.86665 4.89506 4.92351 5.00625 5.02013 5.12165 5.26808 5.28456 5.31428 5.39508 5.42470 5.44688 5.53988 5.68491 5.84000 5.87576 5.96743 6.24339 6.94656 7.21323 7.53192 9.04143 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010784 B = 0.005905 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.815911 B = 4740.361685 C = 6575.723660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.000 6.000 3 C 0.150 3.850 4 C -0.158 4.158 5 C -0.182 4.182 6 C -0.160 4.160 7 S 2.789 3.211 8 O -0.992 6.992 9 O -1.017 7.017 10 N -0.986 5.986 11 C 0.268 3.732 12 C -0.501 4.501 13 H 0.071 0.929 14 C 0.021 3.979 15 N -0.934 5.934 16 Si 0.936 3.064 17 H -0.259 1.259 18 H -0.300 1.300 19 H -0.264 1.264 20 C 0.179 3.821 21 C 0.089 3.911 22 C -0.169 4.169 23 C -0.082 4.082 24 C -0.167 4.167 25 C 0.074 3.926 26 N -0.501 5.501 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.115 0.885 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.012 0.988 38 H 0.012 0.988 39 H 0.259 0.741 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.149 0.851 43 H 0.167 0.833 44 H 0.169 0.831 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.873 -1.950 7.846 15.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.841 5.841 3 C 0.025 3.975 4 C -0.178 4.178 5 C -0.220 4.220 6 C -0.197 4.197 7 S 2.799 3.201 8 O -0.976 6.976 9 O -1.002 7.002 10 N -0.825 5.825 11 C 0.145 3.855 12 C -0.540 4.540 13 H 0.089 0.911 14 C -0.178 4.178 15 N -0.575 5.575 16 Si 0.762 3.238 17 H -0.185 1.185 18 H -0.227 1.227 19 H -0.188 1.188 20 C 0.053 3.947 21 C -0.050 4.050 22 C -0.189 4.189 23 C -0.108 4.108 24 C -0.186 4.186 25 C -0.083 4.083 26 N -0.211 5.211 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.122 0.878 31 H 0.085 0.915 32 H 0.133 0.867 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.129 0.871 42 H 0.166 0.834 43 H 0.185 0.815 44 H 0.187 0.813 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -12.116 -1.812 7.845 14.548 hybrid contribution 0.322 0.080 -0.873 0.934 sum -11.794 -1.733 6.972 13.810 Atomic orbital electron populations 1.21714 0.76729 1.04213 1.03163 1.57623 1.16332 1.20874 1.89254 1.20973 0.95840 0.83519 0.97182 1.22593 0.98729 0.98463 0.98020 1.22887 0.97676 1.03972 0.97427 1.23092 1.03345 0.90587 1.02686 1.01525 0.72245 0.73281 0.73047 1.93509 1.71189 1.62221 1.70678 1.93511 1.38121 1.85160 1.83389 1.57627 1.27716 1.65572 1.31550 1.18642 0.82028 0.95707 0.89160 1.21517 0.98034 1.20405 1.14064 0.91102 1.25543 0.94666 0.98416 0.99128 1.70082 1.05058 1.44832 1.37548 0.86000 0.78434 0.80854 0.78478 1.18463 1.22737 1.18830 1.20064 0.87776 0.84642 1.02251 1.21863 0.94898 0.97393 0.90830 1.22370 1.01900 0.95641 0.98999 1.22013 0.95198 0.94730 0.98871 1.22508 0.99123 1.02712 0.94305 1.23226 0.97089 0.88683 0.99325 1.67527 1.10704 1.14786 1.28035 0.90921 0.88797 0.91208 0.87848 0.91498 0.86671 0.91357 0.90564 0.87331 0.87657 0.96972 0.97036 0.93220 0.89592 0.87133 0.83360 0.81514 0.81311 0.81585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.85 10.13 127.77 1.29 3.14 16 2 N -1.00 -30.46 3.36 -539.14 -1.81 -32.27 16 3 C 0.15 4.48 6.17 86.38 0.53 5.01 16 4 C -0.16 -4.63 5.71 -10.79 -0.06 -4.69 16 5 C -0.18 -6.63 8.86 30.59 0.27 -6.36 16 6 C -0.16 -4.10 10.25 30.59 0.31 -3.79 16 7 S 2.79 109.11 5.96 -56.49 -0.34 108.78 16 8 O -0.99 -37.07 15.64 -128.00 -2.00 -39.07 16 9 O -1.02 -48.62 14.87 -128.00 -1.90 -50.52 16 10 N -0.99 -41.39 2.88 -523.93 -1.51 -42.90 16 11 C 0.27 14.05 5.50 85.63 0.47 14.52 16 12 C -0.50 -26.05 7.72 25.60 0.20 -25.85 16 13 H 0.07 3.48 7.81 -2.91 -0.02 3.46 16 14 C 0.02 1.13 5.46 84.65 0.46 1.59 16 15 N -0.93 -55.76 13.29 21.45 0.28 -55.48 16 16 Si 0.94 42.70 27.13 68.60 1.86 44.56 16 17 H -0.26 -11.14 6.50 99.48 0.65 -10.49 16 18 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 19 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 20 C 0.18 6.45 5.65 85.63 0.48 6.93 16 21 C 0.09 3.25 6.30 42.55 0.27 3.52 16 22 C -0.17 -5.13 9.57 22.36 0.21 -4.91 16 23 C -0.08 -2.00 10.18 22.47 0.23 -1.77 16 24 C -0.17 -3.96 10.11 22.36 0.23 -3.73 16 25 C 0.07 2.27 11.18 84.67 0.95 3.22 16 26 N -0.50 -19.53 9.98 -183.89 -1.83 -21.37 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.09 1.61 6.74 -2.39 -0.02 1.60 16 29 H 0.07 1.40 6.74 -2.39 -0.02 1.39 16 30 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.07 2.44 6.40 -2.39 -0.02 2.42 16 32 H 0.12 3.10 6.87 -2.39 -0.02 3.08 16 33 H 0.07 2.90 8.03 -2.39 -0.02 2.89 16 34 H 0.08 3.00 4.63 -2.38 -0.01 2.99 16 35 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.01 0.73 6.72 -2.39 -0.02 0.71 16 38 H 0.01 0.68 7.84 -2.39 -0.02 0.66 16 39 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 40 H 0.09 3.28 7.86 -2.39 -0.02 3.26 16 41 H 0.11 3.11 6.22 -2.39 -0.01 3.09 16 42 H 0.15 4.22 7.26 -2.91 -0.02 4.20 16 43 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 44 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 45 H 0.17 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -73.97 374.79 -0.46 -74.43 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.94 Total: 27.00 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: 5.85 Total: -13.17 kcal Atomic # 7 Polarization: -147.14 SS G_CDS: -4.87 Total: -152.01 kcal Atomic # 8 Polarization: -85.68 SS G_CDS: -3.90 Total: -89.59 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.86 Total: 44.56 kcal Atomic # 16 Polarization: 109.11 SS G_CDS: -0.34 Total: 108.78 kcal Total: -73.97 -0.46 -74.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523412275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.472 kcal (2) G-P(sol) polarization free energy of solvation -73.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds