Wall clock time and date at job start Sat Apr 11 2020 05:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21280 * 119.99803 * 2 1 4 4 N 1.34776 * 119.99968 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99902 * 180.02562 * 4 2 1 6 6 C 1.50697 * 109.47051 * 180.02562 * 5 4 2 7 7 C 1.38373 * 119.85088 * 269.72543 * 6 5 4 8 8 C 1.37949 * 120.14475 * 179.76716 * 7 6 5 9 9 C 1.39594 * 119.85279 * 0.50642 * 8 7 6 10 10 C 1.47807 * 120.14365 * 179.76896 * 9 8 7 11 11 O 1.21553 * 119.99884 * 179.97438 * 10 9 8 12 12 N 1.34767 * 120.00230 * 359.97438 * 10 9 8 13 13 C 1.39384 * 120.00249 * 174.96293 * 12 10 9 14 14 C 1.38624 * 119.58611 * 185.37554 * 13 12 10 15 15 C 1.40806 * 118.79425 * 179.97438 * 14 13 12 16 16 C 1.41544 * 120.99157 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99503 * 151.71963 * 16 15 14 18 18 C 1.40027 * 120.00114 * 331.71012 * 16 15 14 19 19 N 1.30741 * 120.00085 * 350.22324 * 18 16 15 20 20 Si 1.86799 * 119.99947 * 170.21761 * 18 16 15 21 21 H 1.48504 * 109.47303 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47455 * 120.00232 * 20 18 16 23 23 H 1.48506 * 109.47233 * 240.00566 * 20 18 16 24 24 C 1.41171 * 118.00804 * 359.97438 * 15 14 13 25 25 C 1.37589 * 119.02202 * 0.02562 * 24 15 14 26 26 N 1.32075 * 121.11272 * 359.72257 * 25 24 15 27 27 C 1.39590 * 119.70636 * 359.74967 * 9 8 7 28 28 C 1.37949 * 119.85443 * 359.97438 * 27 9 8 29 29 H 1.08999 * 109.46707 * 240.00063 * 1 2 3 30 30 H 1.08998 * 109.47051 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46741 * 120.00583 * 1 2 3 32 32 H 0.97001 * 119.99943 * 0.02562 * 4 2 1 33 33 H 1.08998 * 109.46994 * 60.00258 * 5 4 2 34 34 H 1.09003 * 109.47178 * 300.00370 * 5 4 2 35 35 H 1.08005 * 119.92126 * 0.02562 * 7 6 5 36 36 H 1.08005 * 120.06835 * 180.22932 * 8 7 6 37 37 H 0.97006 * 120.00142 * 354.96500 * 12 10 9 38 38 H 1.07999 * 120.60311 * 0.02562 * 14 13 12 39 39 H 0.97001 * 120.00263 * 180.02562 * 19 18 16 40 40 H 1.08001 * 120.49195 * 179.97438 * 24 15 14 41 41 H 1.08009 * 119.44152 * 179.97438 * 25 24 15 42 42 H 1.08005 * 120.07239 * 179.97438 * 27 9 8 43 43 H 1.07998 * 119.93295 * 179.97438 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.6460 -1.1672 0.0011 6 6 4.1483 -2.5880 0.0010 7 6 4.3828 -3.2357 1.2010 8 6 4.8381 -4.5378 1.2080 9 6 5.0723 -5.1986 0.0009 10 6 5.5650 -6.5921 0.0009 11 8 5.7676 -7.1651 -1.0518 12 7 5.7896 -7.2274 1.1679 13 6 6.1530 -8.5731 1.1703 14 6 6.2728 -9.2476 2.3754 15 6 6.6403 -10.6067 2.3583 16 6 6.7767 -11.3401 3.5613 17 1 6.6044 -12.4062 3.5661 18 6 7.1351 -10.6832 4.7448 19 7 7.5289 -9.4371 4.7074 20 14 7.0504 -11.5874 6.3772 21 1 6.5769 -12.9765 6.1498 22 1 8.3999 -11.6191 6.9962 23 1 6.1064 -10.8855 7.2835 24 6 6.8685 -11.2160 1.1055 25 6 6.7248 -10.4648 -0.0382 26 7 6.3737 -9.1929 0.0203 27 6 4.8387 -4.5375 -1.2062 28 6 4.3780 -3.2373 -1.1991 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 1.6959 -2.0072 0.0005 33 1 4.0089 -0.6532 0.8911 34 1 4.0097 -0.6535 -0.8889 35 1 4.2050 -2.7219 2.1343 36 1 5.0172 -5.0435 2.1455 37 1 5.6984 -6.7483 2.0064 38 1 6.0869 -8.7400 3.3104 39 1 7.7776 -8.9822 5.5273 40 1 7.1526 -12.2563 1.0456 41 1 6.8982 -10.9240 -1.0003 42 1 5.0183 -5.0429 -2.1436 43 1 4.1972 -2.7245 -2.1322 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532435724.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:35 Heat of formation + Delta-G solvation = -12.157141 kcal Electronic energy + Delta-G solvation = -26996.549285 eV Core-core repulsion = 23006.421246 eV Total energy + Delta-G solvation = -3990.128039 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.41104 -39.83141 -38.86098 -37.63416 -35.20112 -34.44682 -33.85098 -32.11716 -31.20365 -30.60003 -30.11049 -28.63196 -26.40140 -26.03092 -23.08240 -22.85326 -22.00310 -21.24444 -20.99371 -19.80895 -18.09170 -17.67169 -17.35478 -16.59807 -16.18851 -15.74162 -15.46298 -15.18735 -15.02049 -14.78877 -14.65209 -14.26627 -13.97158 -13.85418 -13.74149 -13.45597 -13.26032 -13.08296 -12.82235 -12.77120 -12.63473 -12.38065 -12.22581 -11.76901 -11.48140 -11.26921 -11.25049 -10.96776 -10.36769 -10.33452 -10.18503 -9.82807 -9.56836 -9.49936 -9.45246 -9.21159 -9.04970 -8.02329 -7.81756 -7.11320 -6.81553 -4.67884 0.60282 1.15538 2.27563 2.48405 2.73208 2.84979 2.99011 3.04244 3.15628 3.32169 3.48309 3.81994 3.92727 4.23660 4.47620 4.51324 4.64267 4.70237 4.85203 4.87078 4.94141 5.01344 5.13005 5.27784 5.40415 5.46520 5.57493 5.60745 5.76556 5.87945 5.97702 6.07106 6.21041 6.23845 6.50199 6.56052 6.64597 6.73921 6.88976 7.05987 7.10466 7.30311 7.38610 7.70140 7.83345 7.86838 8.12865 8.35498 8.62982 8.69884 8.77022 9.59823 10.05755 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015584 B = 0.002093 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.308297 B =13376.513162 C =14692.944440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.509 3.491 3 O -0.548 6.548 4 N -0.728 5.728 5 C 0.160 3.840 6 C -0.097 4.097 7 C -0.106 4.106 8 C -0.090 4.090 9 C -0.112 4.112 10 C 0.538 3.462 11 O -0.475 6.475 12 N -0.651 5.651 13 C 0.333 3.667 14 C -0.234 4.234 15 C 0.143 3.857 16 C -0.456 4.456 17 H 0.082 0.918 18 C 0.075 3.925 19 N -0.796 5.796 20 Si 0.914 3.086 21 H -0.260 1.260 22 H -0.273 1.273 23 H -0.272 1.272 24 C -0.279 4.279 25 C 0.117 3.883 26 N -0.551 5.551 27 C -0.064 4.064 28 C -0.108 4.108 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.404 0.596 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.407 0.593 38 H 0.130 0.870 39 H 0.281 0.719 40 H 0.103 0.897 41 H 0.125 0.875 42 H 0.139 0.861 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.681 14.601 -3.343 18.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.297 3.703 3 O -0.426 6.426 4 N -0.380 5.380 5 C 0.037 3.963 6 C -0.098 4.098 7 C -0.125 4.125 8 C -0.109 4.109 9 C -0.115 4.115 10 C 0.323 3.677 11 O -0.346 6.346 12 N -0.297 5.297 13 C 0.109 3.891 14 C -0.260 4.260 15 C 0.134 3.866 16 C -0.487 4.487 17 H 0.100 0.900 18 C -0.143 4.143 19 N -0.423 5.423 20 Si 0.739 3.261 21 H -0.183 1.183 22 H -0.199 1.199 23 H -0.197 1.197 24 C -0.303 4.303 25 C -0.037 4.037 26 N -0.271 5.271 27 C -0.083 4.083 28 C -0.127 4.127 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.239 0.761 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.243 0.757 38 H 0.147 0.853 39 H 0.092 0.908 40 H 0.122 0.878 41 H 0.143 0.857 42 H 0.157 0.843 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.132 15.670 -4.776 19.262 hybrid contribution -0.005 -1.066 2.146 2.396 sum -10.137 14.604 -2.630 17.971 Atomic orbital electron populations 1.21926 0.91468 1.05602 1.04427 1.20867 0.90702 0.83326 0.75438 1.90737 1.70914 1.31428 1.49515 1.46159 1.06992 1.09060 1.75823 1.20216 0.79950 0.92787 1.03388 1.19983 1.00738 0.95388 0.93702 1.21002 0.99339 0.94489 0.97664 1.21410 0.97271 0.94716 0.97485 1.20295 1.02147 0.94721 0.94357 1.18331 0.79240 0.85570 0.84565 1.90857 1.47318 1.66123 1.30264 1.43320 1.67531 1.09918 1.08940 1.18173 0.96727 0.83244 0.90978 1.21603 1.11850 0.97105 0.95421 1.17595 0.85569 0.91047 0.92347 1.19602 1.41342 0.95935 0.91837 0.89953 1.25941 0.92219 0.94861 1.01241 1.69747 1.31295 1.11176 1.30049 0.86158 0.78726 0.80658 0.80596 1.18344 1.19867 1.19692 1.21961 1.13846 1.00657 0.93791 1.21783 0.95847 0.89184 0.96904 1.67215 1.22149 1.11021 1.26667 1.21308 0.95078 0.93789 0.98098 1.21040 0.99464 0.94531 0.97619 0.89276 0.88924 0.89299 0.76136 0.90383 0.90408 0.85271 0.85141 0.75662 0.85253 0.90833 0.87834 0.85750 0.84289 0.85282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 10.32 36.01 0.37 -0.42 16 2 C 0.51 4.30 7.94 -10.98 -0.09 4.21 16 3 O -0.55 -7.15 17.09 5.56 0.09 -7.06 16 4 N -0.73 -5.02 5.55 -61.47 -0.34 -5.36 16 5 C 0.16 1.26 5.79 -5.19 -0.03 1.23 16 6 C -0.10 -0.83 5.25 -104.53 -0.55 -1.38 16 7 C -0.11 -0.95 9.68 -39.64 -0.38 -1.33 16 8 C -0.09 -0.99 9.54 -39.18 -0.37 -1.36 16 9 C -0.11 -1.55 5.87 -104.97 -0.62 -2.16 16 10 C 0.54 10.07 7.73 -12.35 -0.10 9.98 16 11 O -0.47 -10.74 14.60 5.32 0.08 -10.66 16 12 N -0.65 -12.53 5.33 -12.36 -0.07 -12.59 16 13 C 0.33 7.94 7.41 -154.76 -1.15 6.79 16 14 C -0.23 -5.80 8.59 -38.47 -0.33 -6.13 16 15 C 0.14 3.68 5.58 -106.55 -0.59 3.09 16 16 C -0.46 -11.47 9.13 -37.65 -0.34 -11.82 16 17 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 18 C 0.08 1.78 5.30 -17.35 -0.09 1.69 16 19 N -0.80 -19.21 10.83 55.55 0.60 -18.61 16 20 Si 0.91 17.62 29.57 -169.99 -5.03 12.60 16 21 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 22 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 23 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 24 C -0.28 -6.71 9.90 -38.71 -0.38 -7.09 16 25 C 0.12 2.76 11.15 -17.68 -0.20 2.57 16 26 N -0.55 -13.86 7.85 -12.53 -0.10 -13.96 16 27 C -0.06 -0.78 9.60 -39.18 -0.38 -1.15 16 28 C -0.11 -1.00 9.68 -39.64 -0.38 -1.39 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.45 8.12 -51.93 -0.42 0.03 16 31 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.40 2.01 8.46 -40.82 -0.35 1.66 16 33 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 36 H 0.13 1.26 6.42 -52.48 -0.34 0.92 16 37 H 0.41 6.40 6.75 -40.82 -0.28 6.13 16 38 H 0.13 3.16 6.27 -52.49 -0.33 2.83 16 39 H 0.28 6.12 8.29 -40.82 -0.34 5.78 16 40 H 0.10 2.28 8.06 -52.49 -0.42 1.85 16 41 H 0.13 2.55 8.06 -52.48 -0.42 2.13 16 42 H 0.14 1.75 7.65 -52.48 -0.40 1.35 16 43 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 375.10 15.07 5.65 5.65 Total: -1.00 -33.69 375.10 -9.75 -43.44 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -5.03 Total: 11.25 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -5.61 Total: -4.70 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.10 Total: -50.53 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: 0.17 Total: -17.72 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.69 -9.75 -43.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532435724.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.280 kcal (2) G-P(sol) polarization free energy of solvation -33.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds